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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238116 (84 seq.)
>A171000795
CP001688
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [CP001688]
870407
870335
-
Gln
CTG
-
¡û
>A171001137
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
3859236
3859163
-
Gln
CTG
-
¡û
>A171002447
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
768780
768853
+
Gln
CTG
-
¡û
>A171002628
CP002921
Euryarchaeota
Haloarcula hispanica ATCC 33960 CGMCC 1.2049 [CP002921, CP002922]
2955475
2955403
-
Gln
CTG
-
¡û
>A171003115
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
1511459
1511386
-
Gln
CTG
-
¡û
>A171003191
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
399708
399635
-
Gln
CTG
-
¡û
>A171003484
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
3980658
3980585
-
Gln
CTG
-
¡û
>A171003961
CP006884
Euryarchaeota
Haloarcula hispanica N601 [CP006884, CP006885]
2966912
2966840
-
Gln
CTG
-
¡û
>A171005818
CP010529
Euryarchaeota
Haloarcula sp. CBA1115 [CP010529]
1550007
1549935
-
Gln
CTG
-
¡û
>A171007450
LN831302
Euryarchaeota
Halobacterium hubeiense JI20-1 [LN831302]
2480538
2480465
-
Gln
CTG
-
¡û
>At0789
AY596297
Euryarchaeota
Haloarcula marismortui ATCC 43049 [AY596297, AY596298]
2369936
2369864
-
Gln
CTG
[Ensembl]
¡û
>WENV170680194
LFCJ01005597
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
8079
8152
+
Gln
CTG
[ENA]
¢þ
>WENV170680197
LFCJ01005754
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
2340
2267
-
Gln
CTG
[ENA]
¢þ
>WENV170681450
LFFM01000938
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
19559
19631
+
Gln
CTG
[ENA]
¢þ
>WENV170681637
LFFM01001783
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
154
82
-
Gln
CTG
[ENA]
¢þ
>WENV170681704
LFFM01002167
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
4270
4198
-
Gln
CTG
[ENA]
¢þ
>WENV170681980
LFFM01004498
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
6707
6779
+
Gln
CTG
[ENA]
¢þ
>WENV170682317
LFFM01009078
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
1284
1356
+
Gln
CTG
[ENA]
¢þ
>WENV170702398
LKMJ01001709
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
5011
4939
-
Gln
CTG
[ENA]
¢þ
>WENV170702578
LKMJ01002687
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1051
1123
+
Gln
CTG
[ENA]
¢þ
>WENV170703333
LKMJ01009625
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
5111
5183
+
Gln
CTG
[ENA]
¢þ
>WENV170703570
LKMJ01013831
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
6941
7014
+
Gln
CTG
[ENA]
¢þ
>WENV170703704
LKMJ01015826
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
388
461
+
Gln
CTG
[ENA]
¢þ
>W1920000002
BBJN01000009
Euryarchaeota
Halolamina rubra CBA1107 [BBJN]
78596
78523
-
Gln
CTG
[ENA]
¡û
>W1920000113
BIXZ01000002
Euryarchaeota
Haloarcula mannanilytica MD-130 MD130-1 [BIXZ]
258900
258973
+
Gln
CTG
[ENA]
¡û
>W1920000118
CVRT01000052
Euryarchaeota
Halorubrum sp. SD626R [CVRT]
63132
63204
+
Gln
CTG
[ENA]
¡û
>W1920000126
FMZP01000006
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
146103
146030
-
Gln
CTG
[ENA]
¡û
>W1920000133
FNOF01000002
Euryarchaeota
Haloarcula vallismortis DSM 3756 [FNOF]
404142
404070
-
Gln
CTG
[ENA]
¡û
>W1920000141
FOIC01000006
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
49340
49413
+
Gln
CTG
[ENA]
¡û
>W1920000144
FOPZ01000024
Euryarchaeota
Halorubrum aquaticum CGMCC 1.6377 [FOPZ]
10029
10101
+
Gln
CTG
[ENA]
¡û
>W1920000147
FOXI01000005
Euryarchaeota
Halolamina pelagica CGMCC 1.10329 [FOXI]
177491
177418
-
Gln
CTG
[ENA]
¡û
>W1920000148
FOYN01000001
Euryarchaeota
Halorubrum sodomense RD 26 [FOYN]
47542
47469
-
Gln
CTG
[ENA]
¡û
>W1920000279
JNCS01000004
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
334231
334304
+
Gln
CTG
[ENA]
¡û
>W1920000285
JXAN01000002
Euryarchaeota
Natrinema altunense 1A4-DGR [JXAN]
65460
65533
+
Gln
CTG
[ENA]
¡û
>W1920000287
JXAO01000028
Euryarchaeota
Haloarcula argentinensis H5-DGR [JXAO]
21278
21350
+
Gln
CTG
[ENA]
¡û
>W1920000315
LIUF01000001
Euryarchaeota
Haloarcula rubripromontorii SL3 [LIUF]
764658
764585
-
Gln
CTG
[ENA]
¡û
>W1920000601
MWUK01000003
Euryarchaeota
Halolamina sp. CBA1230 [MWUK]
2433883
2433956
+
Gln
CTG
[ENA]
¡û
>W1920000668
NHPJ01000002
Euryarchaeota
Halorubrum halodurans Cb34 [NHPJ]
1201
1129
-
Gln
CTG
[ENA]
¡û
>W1920001038
QMIM01000018
Euryarchaeota
Halorubrum sp. 48-1-W [QMIM]
68032
68104
+
Gln
CTG
[ENA]
¡û
>W1920001046
QPLN01000001
Euryarchaeota
Haloarcula sp. Atlit-120R [QPLN]
1136756
1136684
-
Gln
CTG
[ENA]
¡û
>W1920001048
QPLQ01000001
Euryarchaeota
Haloarcula sp. Atlit-47R [QPLQ]
1202719
1202647
-
Gln
CTG
[ENA]
¡û
>W1920001074
QXIK01000003
Euryarchaeota
Haloarcula sp. Atlit-7R [QXIK]
308043
307971
-
Gln
CTG
[ENA]
¡û
>W1910227153
FNLC01000003
Euryarchaeota
Natronobacterium texcoconense DSM 24767 [FNLC]
252151
252078
-
Gln
CTG
[ENA]
¡û
>W1910229346
FNWL01000004
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
163767
163694
-
Gln
CTG
[ENA]
¡û
>W1910229685
FOCX01000003
Euryarchaeota
Halorientalis persicus IBRC-M 10043 [FOCX]
4239
4311
+
Gln
CTG
[ENA]
¡û
>W1910230463
FORO01000062
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
6768
6695
-
Gln
CTG
[ENA]
¡û
>W1910340545
FTNR01000005
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
224737
224810
+
Gln
CTG
[ENA]
¡û
>W1910657587
MASN01000060
Euryarchaeota
Natrialba sp. SSL1 [MASN]
298981
299054
+
Gln
CTG
[ENA]
¡û
>W1911433984
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
3365887
3365960
+
Gln
CTG
[ENA]
¡û
>W1911591353
PKKI01000087
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
6237
6164
-
Gln
CTG
[ENA]
¡û
>W1610000803
ABTY01000001
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [ABTY]
2856285
2856357
+
Pseudo
CTG
[ENA]
¡û
>W1610004101
AGIM01000009
Euryarchaeota
Natronobacterium gregoryi SP2 [AGIM]
6853
6926
+
Pseudo
CTG
[ENA]
¡û
>W1610005356
AJVG01000001
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
303516
303443
-
Pseudo
CTG
[ENA]
¡û
>W1610011998
AOHY01000012
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
11158
11231
+
Pseudo
CTG
[ENA]
¡û
>W1610012072
AOIA01000033
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
35378
35305
-
Pseudo
CTG
[ENA]
¡û
>W1610012170
AOIC01000064
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
6618
6691
+
Pseudo
CTG
[ENA]
¡û
>W1610012344
AOIJ01000052
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
40349
40422
+
Pseudo
CTG
[ENA]
¡û
>W1610012396
AOIK01000035
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
67631
67704
+
Pseudo
CTG
[ENA]
¡û
>W1610012474
AOIM01000034
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
106494
106567
+
Pseudo
CTG
[ENA]
¡û
>W1610014147
AOLQ01000059
Euryarchaeota
Haloarcula vallismortis ATCC 29715 [AOLQ]
43540
43612
+
Pseudo
CTG
[ENA]
¡û
>W1610014179
AOLR01000010
Euryarchaeota
Haloarcula sinaiiensis ATCC 33800 [AOLR]
157298
157226
-
Pseudo
CTG
[ENA]
¡û
>W1610014227
AOLS01000062
Euryarchaeota
Haloarcula californiae ATCC 33799 [AOLS]
407652
407580
-
Pseudo
CTG
[ENA]
¡û
>W1610014251
AOLW01000006
Euryarchaeota
Haloarcula amylolytica JCM 13557 [AOLW]
206158
206230
+
Pseudo
CTG
[ENA]
¡û
>W1610014325
AOLX01000022
Euryarchaeota
Haloarcula argentinensis DSM 12282 [AOLX]
170341
170413
+
Pseudo
CTG
[ENA]
¡û
>W1610014362
AOLY01000005
Euryarchaeota
Haloarcula japonica DSM 6131 [AOLY]
18434
18506
+
Pseudo
CTG
[ENA]
¡û
>W1610014461
AOMA01000070
Euryarchaeota
Halobiforma nitratireducens JCM 10879 [AOMA]
10741
10668
-
Pseudo
CTG
[ENA]
¡û
>W1610018972
AQZY01000005
Euryarchaeota
Halomicrobium katesii DSM 19301 [AQZY]
10495
10567
+
Pseudo
CTG
[ENA]
¡û
>W1610061873
BCMZ01000001
Euryarchaeota
Halobacterium sp. CBA1132 [BCMZ]
2500210
2500137
-
Pseudo
CTG
[ENA]
¡û
>W1610061913
BCNA01000001
Euryarchaeota
Haloarcula sp. CBA1128 [BCNA]
2268370
2268298
-
Pseudo
CTG
[ENA]
¡û
>W1610061934
BCNB01000006
Euryarchaeota
Haloarcula sp. CBA1127 [BCNB]
632645
632718
+
Pseudo
CTG
[ENA]
¡û
>W1610082998
CBMA010000051
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
71340
71267
-
Pseudo
CTG
[ENA]
¡û
>W1610085072
CEML01000001
Euryarchaeota
Halobacterium hubeiense JI20-4 [CEML]
1233713
1233640
-
Pseudo
CTG
[ENA]
¡û
>W1610085099
CEMN01000001
Euryarchaeota
Halobacterium hubeiense JI20-3 [CEMN]
225935
226008
+
Pseudo
CTG
[ENA]
¡û
>W1610085138
CEMO01000001
Euryarchaeota
Halobacterium hubeiense JI20-2 [CEMO]
268269
268342
+
Pseudo
CTG
[ENA]
¡û
>W1610085177
CEMP01000001
Euryarchaeota
Halobacterium hubeiense JI20-6 [CEMP]
267773
267846
+
Pseudo
CTG
[ENA]
¡û
>W1610085238
CEMQ01000001
Euryarchaeota
Halobacterium hubeiense JI20-7 [CEMQ]
2291005
2290932
-
Pseudo
CTG
[ENA]
¡û
>W1610085271
CEMR01000001
Euryarchaeota
Halobacterium hubeiense JI20-5 [CEMR]
1233776
1233703
-
Pseudo
CTG
[ENA]
¡û
>W1610085320
CEMZ01000001
Euryarchaeota
Halobacterium hubeiense JI20-8 [CEMZ]
2247621
2247548
-
Pseudo
CTG
[ENA]
¡û
>W1610682144
LKMK01000128
Euryarchaeota
Natrialbaceae archaeon B1-Br10_E2g2 [LKMK]
2340
2267
-
Pseudo
CTG
[ENA]
¡û
>W1610682197
LKMM01000081
Euryarchaeota
Natrialbaceae archaeon B1-Br10_E2g27 [LKMM]
8079
8152
+
Pseudo
CTG
[ENA]
¡û
>W1610682352
LKMU01000010
Euryarchaeota
Halorubrum sp. PL-Br10_E2g5 [LKMU]
5011
4939
-
Pseudo
CTG
[ENA]
¡û
>W1610682423
LKMY01000010
Euryarchaeota
Nanohaloarchaea archaeon PL-Br10_U2g5 [LKMY]
5011
4939
-
Pseudo
CTG
[ENA]
¡û
>W1610779644
LOAJ01000001
Euryarchaeota
Halorubrum aethiopicum SAH-A6 [LOAJ]
621079
621007
-
Pseudo
CTG
[ENA]
¡û
>W1610881037
LRHL01000043
Euryarchaeota
Haloarcula sp. K1 [LRHL]
119436
119508
+
Pseudo
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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