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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238668 (71 seq.)
>W1710787545
LJJR01000040
Deinococcota
Thermus scotoductus [LJJR]
15615
15540
-
Arg
TCT
[ENA]
¡û
>W131218101
ATXJ01000007
Deinococcota
Thermus islandicus DSM 21543 [ATXJ]
4153
4228
+
Arg
TCT
[ENA]
¡û
>C171047238
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
147683
147608
-
Arg
TCT
-
¡û
>W131155611
AQOS01000015
Deinococcota
Thermus thermophilus ATCC 33923 [AQOS]
8316
8241
-
Arg
TCT
[ENA]
¡û
>W131160744
AQWU01000072
Deinococcota
Thermus igniterrae ATCC 700962 [AQWU]
44055
44130
+
Arg
TCT
[ENA]
¡û
>W131167525
ARDI01000011
Deinococcota
Thermus oshimai DSM 12092 [ARDI]
71295
71220
-
Arg
TCT
[ENA]
¡û
>W131177907
ARLD01000079
Deinococcota
Thermus scotoductus DSM 8553 [ARLD]
49624
49699
+
Arg
TCT
[ENA]
¡û
>C025915
AE017221
Deinococcota
Thermus thermophilus HB27 [AE017221]
253496
253421
-
Arg
TCT
[Ensembl]
¡û
>C025953
AP008226
Deinococcota
Thermus thermophilus HB8 [AP008226]
599713
599638
-
Arg
TCT
[Ensembl]
¡û
>W141080513
ATNI01000054
Deinococcota
Thermus sp. NMX2.A1 [ATNI]
87189
87264
+
Arg
TCT
[ENA]
¡û
>WENV181405522
OGCE01000256
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
14137
14062
-
Arg
TCT
[ENA]
¢þ
>WENV181408217
OGCH01000983
[OGCH] hot springs metagenome; hot springs
11580
11655
+
Arg
TCT
[ENA]
¢þ
>C191159653
CP038452
Deinococcota
Thermus caldilimi YIM 78456 [CP038452]
359351
359426
+
Arg
TCT
-
¡û
>C191189998
LR027517
Deinococcota
Thermus thermophilus [LR027517]
1033495
1033570
+
Arg
TCT
-
¡û
>W141818234
JQLJ01000001
Deinococcota
Thermus scotoductus KI2 [JQLJ]
394750
394825
+
Arg
TCT
[ENA]
¡û
>W141818298
JQLK01000001
Deinococcota
Thermus tengchongensis YIM 77401 [JQLK]
1815749
1815674
-
Arg
TCT
[ENA]
¡û
>W141820351
JQMV01000003
Deinococcota
Thermus amyloliquefaciens YIM 77409 [JQMV]
893344
893419
+
Arg
TCT
[ENA]
¡û
>W1911578809
PELL01000367
Deinococcota
Thermus scotoductus 39_S39 [PELL]
883
808
-
Arg
TCT
[ENA]
¡û
>W1911578853
PELM01000344
Deinococcota
Thermus scotoductus 38_S38 [PELM]
12140
12215
+
Arg
TCT
[ENA]
¡û
>W1911578881
PELN01000059
Deinococcota
Thermus scotoductus 37_S37 [PELN]
959
884
-
Arg
TCT
[ENA]
¡û
>W1911578947
PELO01000280
Deinococcota
Thermus scotoductus 35_S35 [PELO]
4513
4438
-
Arg
TCT
[ENA]
¡û
>W1911579001
PELP01000355
Deinococcota
Thermus scotoductus 34_S34 [PELP]
12165
12240
+
Arg
TCT
[ENA]
¡û
>W1911579050
PELQ01000276
Deinococcota
Thermus scotoductus 33_S33 [PELQ]
12143
12218
+
Arg
TCT
[ENA]
¡û
>W1911579103
PELR01000360
Deinococcota
Thermus scotoductus 32_S32 [PELR]
1066
991
-
Arg
TCT
[ENA]
¡û
>W1911579136
PELS01000261
Deinococcota
Thermus scotoductus 31_S31 [PELS]
12102
12177
+
Arg
TCT
[ENA]
¡û
>W1911579206
PELT01000321
Deinococcota
Thermus scotoductus 30_S30 [PELT]
4891
4816
-
Arg
TCT
[ENA]
¡û
>W1911579246
PELU01000432
Deinococcota
Thermus scotoductus 29_S29 [PELU]
954
879
-
Arg
TCT
[ENA]
¡û
>W1911579268
PELV01000059
Deinococcota
Thermus scotoductus 28_S28 [PELV]
1004
929
-
Arg
TCT
[ENA]
¡û
>W1911579335
PELW01000310
Deinococcota
Thermus scotoductus 27_S27 [PELW]
2356
2281
-
Arg
TCT
[ENA]
¡û
>W1911579395
PELX01000322
Deinococcota
Thermus scotoductus 26_S26 [PELX]
7691
7766
+
Arg
TCT
[ENA]
¡û
>W1911579420
PELY01000061
Deinococcota
Thermus scotoductus 25_S25 [PELY]
3849
3924
+
Arg
TCT
[ENA]
¡û
>W1911579449
PELZ01000010
Deinococcota
Thermus scotoductus 24_S24 [PELZ]
971
896
-
Arg
TCT
[ENA]
¡û
>W1911579537
PEMA01000337
Deinococcota
Thermus scotoductus 23_S23 [PEMA]
4915
4840
-
Arg
TCT
[ENA]
¡û
>W1911579546
PEMB01000026
Deinococcota
Thermus scotoductus 22_S22 [PEMB]
2919
2844
-
Arg
TCT
[ENA]
¡û
>W1911579618
PEMC01000263
Deinococcota
Thermus scotoductus 21_S21 [PEMC]
4882
4807
-
Arg
TCT
[ENA]
¡û
>W1911579666
PEMD01000270
Deinococcota
Thermus scotoductus 20_S20 [PEMD]
12115
12190
+
Arg
TCT
[ENA]
¡û
>W1911579709
PEME01000222
Deinococcota
Thermus scotoductus 19_S19 [PEME]
25131
25056
-
Arg
TCT
[ENA]
¡û
>W1911579767
PEMF01000369
Deinococcota
Thermus scotoductus 18_S18 [PEMF]
12188
12263
+
Arg
TCT
[ENA]
¡û
>W1911579818
PEMG01000433
Deinococcota
Thermus scotoductus 17_S17 [PEMG]
962
887
-
Arg
TCT
[ENA]
¡û
>W1911579838
PEMH01000044
Deinococcota
Thermus scotoductus 16_S16 [PEMH]
379
454
+
Arg
TCT
[ENA]
¡û
>W1911579902
PEMI01000365
Deinococcota
Thermus scotoductus 15_S15 [PEMI]
12163
12238
+
Arg
TCT
[ENA]
¡û
>W1911579949
PEMJ01000134
Deinococcota
Thermus scotoductus 14_S14 [PEMJ]
1163
1238
+
Arg
TCT
[ENA]
¡û
>W1911580008
PEMK01000320
Deinococcota
Thermus scotoductus 13_S13 [PEMK]
3773
3848
+
Arg
TCT
[ENA]
¡û
>W1911580062
PEML01000318
Deinococcota
Thermus scotoductus 12_S12 [PEML]
2852
2777
-
Arg
TCT
[ENA]
¡û
>W1911580108
PEMM01000284
Deinococcota
Thermus scotoductus 11_S11 [PEMM]
7691
7766
+
Arg
TCT
[ENA]
¡û
>W1911580150
PEMN01000346
Deinococcota
Thermus scotoductus 10_S10 [PEMN]
12182
12257
+
Arg
TCT
[ENA]
¡û
>W1911580200
PEMO01000379
Deinococcota
Thermus scotoductus 9_S9 [PEMO]
12161
12236
+
Arg
TCT
[ENA]
¡û
>W1911580236
PEMP01000321
Deinococcota
Thermus scotoductus 8_S8 [PEMP]
12123
12198
+
Arg
TCT
[ENA]
¡û
>W1911580297
PEMQ01000286
Deinococcota
Thermus scotoductus 7_S7 [PEMQ]
7676
7751
+
Arg
TCT
[ENA]
¡û
>W1911580339
PEMR01000240
Deinococcota
Thermus scotoductus 6_S6 [PEMR]
4915
4840
-
Arg
TCT
[ENA]
¡û
>W1911580385
PEMS01000384
Deinococcota
Thermus scotoductus 5_S5 [PEMS]
12154
12229
+
Arg
TCT
[ENA]
¡û
>W1911580445
PEMT01000335
Deinococcota
Thermus scotoductus 4_S4 [PEMT]
4915
4840
-
Arg
TCT
[ENA]
¡û
>W1911580480
PEMU01000279
Deinococcota
Thermus scotoductus 3_S3 [PEMU]
4518
4443
-
Arg
TCT
[ENA]
¡û
>W1911580523
PEMV01000255
Deinococcota
Thermus scotoductus 2_S2 [PEMV]
12117
12192
+
Arg
TCT
[ENA]
¡û
>W1911580578
PEMW01000344
Deinococcota
Thermus scotoductus 1_S1 [PEMW]
953
878
-
Arg
TCT
[ENA]
¡û
>W1810268438
PRDA01000018
Deinococcota
Thermus tenuipuniceus YIM 76954 [PRDA]
650
575
-
Arg
TCT
[ENA]
¡û
>W1810605075
QGMX01000001
Deinococcota
Thermus caldifontis YIM 73026 [QGMX]
84165
84090
-
Arg
TCT
[ENA]
¡û
>W1810889184
QURO01000004
Deinococcota
Thermus sediminis L198 [QURO]
429690
429615
-
Arg
TCT
[ENA]
¡û
>ENV09004186
ADKJ01001271
Hot springs metagenome ctg_1106445192081
219
144
-
Arg
TCT
[ENA]
¡û
>W1511312770
JPSL02000037
Deinococcota
Thermus filiformis ATCC 43280 [JPSL]
57641
57716
+
Arg
TCT
[ENA]
¡û
>W1511401710
JTJB01000035
Deinococcota
Thermus sp. 2.9 [JTJB]
306
381
+
Arg
TCT
[ENA]
¡û
>C11123049
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
958609
958684
+
Arg
TCT
[Ensembl]
¡û
>C121006429
CP003126
Deinococcota
Thermus sp. CCB_US3_UF1 [CP003126]
1360157
1360082
-
Arg
TCT
[Ensembl]
¡û
>C161067095
CP014141
Deinococcota
Thermus parvatiensis RL [CP014141]
1370956
1371031
+
Arg
TCT
[Ensembl]
¡û
>W121056033
AIJQ01000004
Deinococcota
Thermus parvatiensis RL [AIJQ]
185528
185453
-
Arg
TCT
[ENA]
¡û
>W1610045343
BBBL01000474
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
522
597
+
Arg
TCT
[ENA]
¡û
>W1610045424
BBBN01000358
Deinococcota
Thermus sp. JCM 17653 [BBBN]
1452
1377
-
Arg
TCT
[ENA]
¡û
>W1610651400
LJJR01000040
Deinococcota
Thermus scotoductus [LJJR]
15615
15540
-
Arg
TCT
[ENA]
¡û
>W1710042184
BBBL01000474
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
522
597
+
Arg
TCT
[ENA]
¡û
>W1710042265
BBBN01000358
Deinococcota
Thermus sp. JCM 17653 [BBBN]
1452
1377
-
Arg
TCT
[ENA]
¡û
>W1710514651
FNBC01000017
Deinococcota
Thermus arciformis [FNBC]
17293
17218
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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