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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243244 (57 seq.)
>W1710860639
LMDB01000002
Betaproteobacteria
Duganella sp. Root336D2 [LMDB]
53696
53772
+
Pro
TGG
[ENA]
¡û
>W1710860704
LMDB01000039
Betaproteobacteria
Duganella sp. Root336D2 [LMDB]
250293
250217
-
Pro
TGG
[ENA]
¡û
>W1710863108
LMEW01000007
Betaproteobacteria
Massilia sp. Root133 [LMEW]
29418
29494
+
Pro
TGG
[ENA]
¡û
>W1710863116
LMEW01000012
Betaproteobacteria
Massilia sp. Root133 [LMEW]
510226
510302
+
Pro
TGG
[ENA]
¡û
>W1710864601
LMFZ01000034
Betaproteobacteria
Duganella sp. Root1480D1 [LMFZ]
2701
2625
-
Pro
TGG
[ENA]
¡û
>W1710864612
LMFZ01000049
Betaproteobacteria
Duganella sp. Root1480D1 [LMFZ]
80107
80183
+
Pro
TGG
[ENA]
¡û
>W1710864686
LMGB01000022
Betaproteobacteria
Massilia sp. Root1485 [LMGB]
29383
29459
+
Pro
TGG
[ENA]
¡û
>W1710864696
LMGB01000038
Betaproteobacteria
Massilia sp. Root1485 [LMGB]
300155
300231
+
Pro
TGG
[ENA]
¡û
>W1710867228
LMIC01000012
Betaproteobacteria
Duganella sp. Root198D2 [LMIC]
248385
248309
-
Pro
TGG
[ENA]
¡û
>W1710867238
LMIC01000034
Betaproteobacteria
Duganella sp. Root198D2 [LMIC]
60123
60199
+
Pro
TGG
[ENA]
¡û
>W131052476
AMYZ01000008
Betaproteobacteria
beta proteobacterium L13 [AMYZ]
144278
144354
+
Pro
TGG
[ENA]
¡û
>W131225119
AUDI01000003
Betaproteobacteria
Pseudoduganella violaceinigra DSM 15887 [AUDI]
122311
122387
+
Pro
TGG
[ENA]
¡û
>W1711767638
MVAD01000001
Betaproteobacteria
Massilia sp. KIM [MVAD]
2026430
2026354
-
Pro
TGG
[ENA]
¡û
>W1711767667
MVAD01000004
Betaproteobacteria
Massilia sp. KIM [MVAD]
195351
195275
-
Pro
TGG
[ENA]
¡û
>C171088500
CP019038
Betaproteobacteria
Massilia putida 6NM-7 [CP019038]
6239464
6239540
+
Pro
TGG
-
¡û
>C171088520
CP019038
Betaproteobacteria
Massilia putida 6NM-7 [CP019038]
3908834
3908758
-
Pro
TGG
-
¡û
>W131225132
AUDI01000006
Betaproteobacteria
Pseudoduganella violaceinigra DSM 15887 [AUDI]
181834
181758
-
Pro
TGG
[ENA]
¡û
>W131237822
AUSC01000123
Betaproteobacteria
Oxalobacteraceae bacterium JGI 001010-B17 [AUSC]
8945
8869
-
Pro
TGG
[ENA]
¡û
>WENV180020643
FTCZ01007816
[FTCZ] metagenome; soil
2397
2473
+
Pro
TGG
[ENA]
¢þ
>WENV181170049
OEIV010021420
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1638
1714
+
Pro
TGG
[ENA]
¢þ
>WENV181360958
OFNE01000574
[OFNE] sediment metagenome; Lake sediment
393
317
-
Pro
TGG
[ENA]
¢þ
>WENV181850372
OGWD01000035
[OGWD] freshwater metagenome; freshwater
2432
2356
-
Pro
TGG
[ENA]
¢þ
>WENV181855080
OGWL01000296
[OGWL] freshwater metagenome; freshwater
3899
3823
-
Pro
TGG
[ENA]
¢þ
>W141241336
CAHF01000011
Betaproteobacteria
Noviherbaspirillum massiliense JC206 [CAHF]
647875
647799
-
Pro
TGG
[ENA]
¡û
>WENV183734529
PJTZ01015670
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
130
206
+
Pro
TGG
[ENA]
¢þ
>WENV183739224
PJUE01003696
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
1225
1149
-
Pro
TGG
[ENA]
¢þ
>WENV170575228
FLYN01045969
[FLYN] hot springs metagenome; Sediment
95
171
+
Pro
TGG
[ENA]
¢þ
>WENV170642320
JFJP01040274
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
11492
11568
+
Pro
TGG
[ENA]
¢þ
>WENV170660809
JXWU01036306
[JXWU] soil metagenome; rice field; organic control Plot
475
551
+
Pro
TGG
[ENA]
¢þ
>C181163989
CP028324
Betaproteobacteria
Pseudoduganella armeniaca ZMN-3 [CP028324]
284340
284264
-
Pro
TGG
-
¡û
>C191150801
CP036401
Betaproteobacteria
Pseudoduganella albidiflava DSM 17472 [CP036401]
7072368
7072444
+
Pro
TGG
-
¡û
>C191157301
CP038026
Betaproteobacteria
Pseudoduganella plicata DSM 17505 [CP038026]
3771603
3771679
+
Pro
TGG
-
¡û
>W141821344
JQNN01000001
Betaproteobacteria
Massilia sp. 9096 [JQNN]
832367
832443
+
Pro
TGG
[ENA]
¡û
>W141821376
JQNN01000001
Betaproteobacteria
Massilia sp. 9096 [JQNN]
4300600
4300524
-
Pro
TGG
[ENA]
¡û
>W1810330131
PUIP01000007
Betaproteobacteria
Massilia phosphatilytica 12-OD1 [PUIP]
8257
8181
-
Pro
TGG
[ENA]
¡û
>W1810330153
PUIP01000019
Betaproteobacteria
Massilia phosphatilytica 12-OD1 [PUIP]
81728
81804
+
Pro
TGG
[ENA]
¡û
>W1810659420
QJKB01000001
Betaproteobacteria
Undibacterium pigrum DSM 19792 [QJKB]
1397384
1397460
+
Pro
TGG
[ENA]
¡û
>W1810659421
QJKB01000001
Betaproteobacteria
Undibacterium pigrum DSM 19792 [QJKB]
1397562
1397638
+
Pro
TGG
[ENA]
¡û
>W1511310193
JPQD01000013
Betaproteobacteria
Massilia sp. JS1662 [JPQD]
63636
63560
-
Pro
TGG
[ENA]
¡û
>W1511310211
JPQD01000048
Betaproteobacteria
Massilia sp. JS1662 [JPQD]
19613
19689
+
Pro
TGG
[ENA]
¡û
>W1511657402
LELH02000003
Betaproteobacteria
Massilia sp. WF1 [LELH]
3715
3791
+
Pro
TGG
[ENA]
¡û
>W1511657439
LELH02000027
Betaproteobacteria
Massilia sp. WF1 [LELH]
9156
9232
+
Pro
TGG
[ENA]
¡û
>C161043167
CP012640
Betaproteobacteria
Massilia sp. WG5 [CP012640]
2460577
2460653
+
Pro
TGG
-
¡û
>C161043230
CP012640
Betaproteobacteria
Massilia sp. WG5 [CP012640]
191708
191632
-
Pro
TGG
-
¡û
>W1610722985
LMDB01000002
Betaproteobacteria
Duganella sp. Root336D2 [LMDB]
53696
53772
+
Pro
TGG
[ENA]
¡û
>W1610723050
LMDB01000039
Betaproteobacteria
Duganella sp. Root336D2 [LMDB]
250293
250217
-
Pro
TGG
[ENA]
¡û
>W1610725454
LMEW01000007
Betaproteobacteria
Massilia sp. Root133 [LMEW]
29418
29494
+
Pro
TGG
[ENA]
¡û
>W1610725462
LMEW01000012
Betaproteobacteria
Massilia sp. Root133 [LMEW]
510226
510302
+
Pro
TGG
[ENA]
¡û
>W1610726958
LMFZ01000049
Betaproteobacteria
Duganella sp. Root1480D1 [LMFZ]
80107
80183
+
Pro
TGG
[ENA]
¡û
>W1610727032
LMGB01000022
Betaproteobacteria
Massilia sp. Root1485 [LMGB]
29383
29459
+
Pro
TGG
[ENA]
¡û
>W1610727042
LMGB01000038
Betaproteobacteria
Massilia sp. Root1485 [LMGB]
300155
300231
+
Pro
TGG
[ENA]
¡û
>W1610729574
LMIC01000012
Betaproteobacteria
Duganella sp. Root198D2 [LMIC]
248385
248309
-
Pro
TGG
[ENA]
¡û
>W1610729584
LMIC01000034
Betaproteobacteria
Duganella sp. Root198D2 [LMIC]
60123
60199
+
Pro
TGG
[ENA]
¡û
>W1710512829
FMZS01000007
Betaproteobacteria
Massilia sp. PDC64 [FMZS]
257363
257287
-
Pro
TGG
[ENA]
¡û
>W1710512852
FMZS01000010
Betaproteobacteria
Massilia sp. PDC64 [FMZS]
18701
18777
+
Pro
TGG
[ENA]
¡û
>W1710561494
FOOF01000002
Betaproteobacteria
Duganella sp. CF458 [FOOF]
196725
196801
+
Pro
TGG
[ENA]
¡û
>W1710561505
FOOF01000005
Betaproteobacteria
Duganella sp. CF458 [FOOF]
321685
321761
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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