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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.245899 (89 seq.)
>W1710869879
LMKB01000005
Actinomycetota
Frigoribacterium sp. Leaf8 [LMKB]
1407587
1407514
-
Arg
ACG
[ENA]
¡û
>W1710871367
LMLG01000005
Actinomycetota
Frigoribacterium sp. Leaf44 [LMLG]
158754
158827
+
Arg
ACG
[ENA]
¡û
>W1710872760
LMMF01000002
Actinomycetota
Frigoribacterium sp. Leaf254 [LMMF]
54638
54565
-
Arg
ACG
[ENA]
¡û
>W1710873132
LMMO01000001
Actinomycetota
Frigoribacterium sp. Leaf263 [LMMO]
803028
803101
+
Arg
ACG
[ENA]
¡û
>W1710876045
LMOX01000001
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
185299
185374
+
Arg
ACG
[ENA]
¡û
>W1710876912
LMPQ01000011
Actinomycetota
Frigoribacterium sp. Leaf186 [LMPQ]
151317
151390
+
Arg
ACG
[ENA]
¡û
>W1710878142
LMQR01000002
Actinomycetota
Frigoribacterium sp. Leaf415 [LMQR]
54937
54864
-
Arg
ACG
[ENA]
¡û
>W131225821
AUDX01000009
Actinomycetota
Gulosibacter molinativorax DSM 13485 [AUDX]
131738
131811
+
Arg
ACG
[ENA]
¡û
>W1711328834
MBLM01000108
Actinomycetota
Parafrankia colletiae Cc1.17 [MBLM]
81707
81634
-
Arg
ACG
[ENA]
¡û
>W1711334205
MBQD01000021
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
252935
252862
-
Arg
ACG
[ENA]
¡û
>W1711461351
MJGS01000005
Actinomycetota
Frigoribacterium sp. MCBA15_019 [MJGS]
129620
129693
+
Arg
ACG
[ENA]
¡û
>C171091507
CP019229
Actinomycetota
Tessaracoccus sp. T2.5-30 [CP019229]
1338205
1338132
-
Arg
ACG
-
¡û
>W131170112
ARFH01000017
Actinomycetota
Parafrankia elaeagni BMG5.12 [ARFH]
1591
1518
-
Arg
ACG
[ENA]
¡û
>W131235255
AULK01000004
Actinomycetota
Gryllotalpicola ginsengisoli DSM 22003 [AULK]
134260
134185
-
Arg
ACG
[ENA]
¡û
>WENV180209176
OBAK01029173
[OBAK] marine metagenome; ENVO.00002150
337
264
-
Arg
ACG
[ENA]
¢þ
>WENV180391634
OBPN01013682
[OBPN] marine metagenome; seawater
176
103
-
Arg
ACG
[ENA]
¢þ
>WENV180393756
OBPR01005921
[OBPR] marine metagenome; ENVO:00002042
743
670
-
Arg
ACG
[ENA]
¢þ
>WENV180394716
OBPS01047011
[OBPS] marine metagenome; ENVO:00002010 seawater
260
187
-
Arg
ACG
[ENA]
¢þ
>WENV180399515
OBQO01000078
[OBQO] marine metagenome; ENVO:00002010
2545
2618
+
Arg
ACG
[ENA]
¢þ
>WENV180592172
OCOV01210775
[OCOV] marine metagenome; ENVO:01000301
261
188
-
Arg
ACG
[ENA]
¢þ
>WENV180594843
OCPA01020587
[OCPA] marine metagenome; ENVO:00002010
301
374
+
Arg
ACG
[ENA]
¢þ
>WENV181320932
OFKJ01000472
[OFKJ] marine metagenome; sea ice
1098
1025
-
Arg
ACG
[ENA]
¢þ
>WENV181323720
OFKZ01000642
[OFKZ] marine metagenome; sea ice
310
237
-
Arg
ACG
[ENA]
¢þ
>WENV181324129
OFLC01000235
[OFLC] marine metagenome; melt pond
3449
3522
+
Arg
ACG
[ENA]
¢þ
>WENV181324598
OFLF01011758
[OFLF] marine metagenome; melt pond
366
293
-
Arg
ACG
[ENA]
¢þ
>WENV181325970
OFLJ01058616
[OFLJ] seawater metagenome; seawater
94
167
+
Arg
ACG
[ENA]
¢þ
>WENV181368519
OFQL01015503
[OFQL] freshwater metagenome; Freshwater Lake
68
141
+
Arg
ACG
[ENA]
¢þ
>WENV181370065
OFQR01010260
[OFQR] freshwater metagenome; Freshwater Lake
261
334
+
Arg
ACG
[ENA]
¢þ
>WENV181385738
OFRJ01016756
[OFRJ] marine metagenome; seawater
153
80
-
Arg
ACG
[ENA]
¢þ
>WENV181385834
OFRK01015049
[OFRK] marine metagenome; sea ice
120
193
+
Arg
ACG
[ENA]
¢þ
>WENV181391455
OFRT01008735
[OFRT] seawater metagenome; seawater
270
197
-
Arg
ACG
[ENA]
¢þ
>WENV181856960
OGWN01031728
[OGWN] freshwater metagenome; freshwater
360
433
+
Arg
ACG
[ENA]
¢þ
>WENV183615078
OOEA01050991
[OOEA] marine metagenome; sea ice
188
261
+
Arg
ACG
[ENA]
¢þ
>WENV183618961
OOFP01008727
[OOFP] marine metagenome; seawater
682
755
+
Arg
ACG
[ENA]
¢þ
>WENV183619845
OOFQ01061225
[OOFQ] marine metagenome; seawater
424
351
-
Arg
ACG
[ENA]
¢þ
>WENV183620920
OOFT01000026
[OOFT] marine metagenome; sea ice
1489
1414
-
Arg
ACG
[ENA]
¢þ
>WENV183621645
OOFU01021302
[OOFU] marine metagenome; sea ice
229
156
-
Arg
ACG
[ENA]
¢þ
>WENV183624902
OOGE01031406
[OOGE] marine metagenome; sea ice
493
566
+
Arg
ACG
[ENA]
¢þ
>WENV183628702
OOGO01008803
[OOGO] marine metagenome; sea ice
813
886
+
Arg
ACG
[ENA]
¢þ
>WENV170011430
APMI01065222
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
925
850
-
Arg
ACG
[ENA]
¢þ
>WENV170552014
CXWJ01034335
[CXWJ] wastewater metagenome; activated sludge
2263
2338
+
Arg
ACG
[ENA]
¢þ
>WENV170568720
FLMP01070162
[FLMP] seawater metagenome; seawater
193
266
+
Arg
ACG
[ENA]
¢þ
>WENV170570427
FLOH01000004
[FLOH] marine metagenome; water
836727
836802
+
Arg
ACG
[ENA]
¢þ
>WENV170609351
FUWD011379704
[FUWD] metagenome; unknown
204
131
-
Arg
ACG
[ENA]
¢þ
>WENV170613049
FUWD012776422
[FUWD] metagenome; unknown
562
635
+
Arg
ACG
[ENA]
¢þ
>WENV170619843
FUWD013022021
[FUWD] metagenome; unknown
590
517
-
Arg
ACG
[ENA]
¢þ
>WENV170621704
FUWD013069958
[FUWD] metagenome; unknown
427
352
-
Arg
ACG
[ENA]
¢þ
>WENV170626436
FUWD013222485
[FUWD] metagenome; unknown
1204
1129
-
Arg
ACG
[ENA]
¢þ
>WENV170627432
FUWD013232765
[FUWD] metagenome; unknown
17336
17263
-
Arg
ACG
[ENA]
¢þ
>WENV170627965
FUWD013240201
[FUWD] metagenome; unknown
590
517
-
Arg
ACG
[ENA]
¢þ
>WENV170629890
FUWD013285661
[FUWD] metagenome; unknown
427
352
-
Arg
ACG
[ENA]
¢þ
>WENV170645590
JNSL01000010
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
6263
6338
+
Arg
ACG
[ENA]
¢þ
>WENV170951464
MEHZ011554798
[MEHZ] marine metagenome; marine surface water
1896
1823
-
Arg
ACG
[ENA]
¢þ
>WENV002142
AACY020059315
Marine microbial communities from Global Ocean Sampling (GOS)
1856
1781
-
Arg
ACG
[ENA]
>C191178318
CP040508
Actinomycetota
Rhodoluna limnophila 1B-Mac [CP040508]
54730
54803
+
Arg
ACG
-
¡û
>C191178357
CP040509
Actinomycetota
Rhodoluna limnophila 27D-LEPI [CP040509]
57244
57317
+
Arg
ACG
-
¡û
>C191178396
CP040510
Actinomycetota
Rhodoluna limnophila 36A-HELLB [CP040510]
55679
55752
+
Arg
ACG
-
¡û
>W1810387066
PXVE01000018
Actinomycetota
Gulosibacter molinativorax ON4 [PXVE]
25167
25094
-
Arg
ACG
[ENA]
¡û
>SRA1015395
SRR023846.42063
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
107
180
+
Arg
ACG
[SRA]
>SRA1015834
SRR023846.218497
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
29
102
+
Arg
ACG
[SRA]
>SRA1018795
SRR035082.348277
454 Sequencing (SRP001803)
178
251
+
Arg
ACG
[SRA]
>C151025284
CP007490
Actinomycetota
Rhodoluna lacicola MWH-Ta8 [CP007490]
1350387
1350312
-
Arg
ACG
[Ensembl]
¡û
>SRA1023894
SRR035084.201867
454 Sequencing (SRP001805)
121
194
+
Arg
ACG
[SRA]
>SRA1023933
SRR035084.210271
454 Sequencing (SRP001805)
336
263
-
Arg
ACG
[SRA]
>SRA1024337
SRR035084.302375
454 Sequencing (SRP001805)
242
315
+
Arg
ACG
[SRA]
>SRA1024494
SRR035084.337630
454 Sequencing (SRP001805)
314
387
+
Arg
ACG
[SRA]
>SRA1029953
SRR035087.208130
454 Sequencing (SRP001808)
172
99
-
Arg
ACG
[SRA]
>SRA1045966
SRR035093.206788
454 Sequencing (SRP001814)
349
276
-
Arg
ACG
[SRA]
>SRA1046308
SRR035093.275523
454 Sequencing (SRP001814)
472
399
-
Arg
ACG
[SRA]
>SRA1046490
SRR035093.319164
454 Sequencing (SRP001814)
287
360
+
Arg
ACG
[SRA]
>SRA1046661
SRR035093.355002
454 Sequencing (SRP001814)
433
360
-
Arg
ACG
[SRA]
>W1511509396
JXQZ01000127
Actinomycetota
Frigoribacterium sp. MEB024 [JXQZ]
43276
43203
-
Arg
ACG
[ENA]
¡û
>WENV057681
AACY023302781
Marine microbial communities from Global Ocean Sampling (GOS)
624
699
+
Arg
ACG
[ENA]
>W121063459
AJKR01000002
Actinomycetota
Candidatus Aquiluna sp. IMCC13023 [AJKR]
138951
139024
+
Arg
ACG
[ENA]
¡û
>W1610597826
LFFJ01000001
Actinomycetota
Actinobacteria bacterium casp-actino10 [LFFJ]
23267
23192
-
Arg
ACG
[ENA]
¡û
>W1610620586
LHOZ01000003
Actinomycetota
Frigoribacterium sp. RIT-PI-h [LHOZ]
7626
7699
+
Arg
ACG
[ENA]
¡û
>W1610625739
LIBA01000247
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
1143
1070
-
Arg
ACG
[ENA]
¡û
>W1610732225
LMKB01000005
Actinomycetota
Frigoribacterium sp. Leaf8 [LMKB]
1407587
1407514
-
Arg
ACG
[ENA]
¡û
>W1610733713
LMLG01000005
Actinomycetota
Frigoribacterium sp. Leaf44 [LMLG]
158754
158827
+
Arg
ACG
[ENA]
¡û
>W1610735106
LMMF01000002
Actinomycetota
Frigoribacterium sp. Leaf254 [LMMF]
54638
54565
-
Arg
ACG
[ENA]
¡û
>W1610735478
LMMO01000001
Actinomycetota
Frigoribacterium sp. Leaf263 [LMMO]
803028
803101
+
Arg
ACG
[ENA]
¡û
>W1610738391
LMOX01000001
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
185299
185374
+
Arg
ACG
[ENA]
¡û
>W1610739258
LMPQ01000011
Actinomycetota
Frigoribacterium sp. Leaf186 [LMPQ]
151317
151390
+
Arg
ACG
[ENA]
¡û
>W1610740488
LMQR01000002
Actinomycetota
Frigoribacterium sp. Leaf415 [LMQR]
54937
54864
-
Arg
ACG
[ENA]
¡û
>W1611066172
MBQD01000021
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
252935
252862
-
Arg
ACG
[ENA]
¡û
>W1710588338
FQZG01000049
Actinomycetota
Tessaracoccus bendigoensis DSM 12906 [FQZG]
16726
16801
+
Arg
ACG
[ENA]
¡û
>W1710719073
LFFJ01000001
Actinomycetota
Actinobacteria bacterium casp-actino10 [LFFJ]
23267
23192
-
Arg
ACG
[ENA]
¡û
>W1710748280
LHOZ01000003
Actinomycetota
Frigoribacterium sp. RIT-PI-h [LHOZ]
7626
7699
+
Arg
ACG
[ENA]
¡û
>W1710756866
LIBA01000247
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
1143
1070
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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