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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.251462 (95 seq.)
>W131106696
APFF01000027
Betaproteobacteria
Janthinobacterium sp. CG3 [APFF]
563941
563866
-
Gly
GCC
[ENA]
¡û
>W131106697
APFF01000027
Betaproteobacteria
Janthinobacterium sp. CG3 [APFF]
563781
563706
-
Gly
GCC
[ENA]
¡û
>W131106698
APFF01000027
Betaproteobacteria
Janthinobacterium sp. CG3 [APFF]
563659
563584
-
Gly
GCC
[ENA]
¡û
>W131106699
APFF01000027
Betaproteobacteria
Janthinobacterium sp. CG3 [APFF]
563538
563463
-
Gly
GCC
[ENA]
¡û
>W131106700
APFF01000027
Betaproteobacteria
Janthinobacterium sp. CG3 [APFF]
563418
563343
-
Gly
GCC
[ENA]
¡û
>W1711326601
MBFM01000003
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
231557
231632
+
Gly
GCC
[ENA]
¡û
>W1711326639
MBFM01000005
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
52621
52546
-
Gly
GCC
[ENA]
¡û
>W1711413786
MGWV01000062
Betaproteobacteria
Gallionellales bacterium RBG_16_57_15 [MGWV]
2282
2357
+
Gly
GCC
[ENA]
¡û
>W1711504158
MKUH01000013
Betaproteobacteria
Candidatus Accumulibacter sp. 66-26 [MKUH]
54852
54777
-
Gly
GCC
[ENA]
¡û
>W1711504160
MKUH01000013
Betaproteobacteria
Candidatus Accumulibacter sp. 66-26 [MKUH]
54620
54545
-
Gly
GCC
[ENA]
¡û
>C171089768
CP019169
Betaproteobacteria
Betaproteobacteria bacterium GR16-43 [CP019169]
3266775
3266850
+
Gly
GCC
-
¡û
>W131223730
AUCH01000001
Betaproteobacteria
Azovibrio restrictus DSM 23866 [AUCH]
100558
100633
+
Gly
GCC
[ENA]
¡û
>W131223732
AUCH01000001
Betaproteobacteria
Azovibrio restrictus DSM 23866 [AUCH]
102075
102150
+
Gly
GCC
[ENA]
¡û
>W131223733
AUCH01000001
Betaproteobacteria
Azovibrio restrictus DSM 23866 [AUCH]
102182
102257
+
Gly
GCC
[ENA]
¡û
>C007476
CP000089
Betaproteobacteria
Dechloromonas aromatica [CP000089]
1137715
1137790
+
Gly
GCC
[Ensembl]
¡û
>C007477
CP000089
Betaproteobacteria
Dechloromonas aromatica [CP000089]
1142712
1142787
+
Gly
GCC
[Ensembl]
¡û
>C007486
CP000089
Betaproteobacteria
Dechloromonas aromatica [CP000089]
2190666
2190741
+
Gly
GCC
[Ensembl]
¡û
>C007488
CP000089
Betaproteobacteria
Dechloromonas aromatica [CP000089]
2190886
2190961
+
Gly
GCC
[Ensembl]
¡û
>WENV180099585
NMRC01019883
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
356
431
+
Gly
GCC
[ENA]
¢þ
>WENV180343100
OBLJ01289985
[OBLJ] soil metagenome; Clay
78
3
-
Gly
GCC
[ENA]
¢þ
>WENV180691687
OCZS010187384
[OCZS] soil metagenome; soil
97
172
+
Gly
GCC
[ENA]
¢þ
>WENV181169941
OEIV010015721
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1492
1417
-
Gly
GCC
[ENA]
¢þ
>WENV181297769
OFHK01128694
[OFHK] soil metagenome; Clay
340
265
-
Gly
GCC
[ENA]
¢þ
>WENV181929331
OGYO01019248
[OGYO] human gut metagenome; faeces
2299
2224
-
Gly
GCC
[ENA]
¢þ
>WENV183655540
OQWD01029639
[OQWD] human gut metagenome; human gut
169
244
+
Gly
GCC
[ENA]
¢þ
>WENV183667699
ORJL010674311
[ORJL] groundwater metagenome; groundwater
2451
2526
+
Gly
GCC
[ENA]
¢þ
>WENV183676813
ORJL011671685
[ORJL] groundwater metagenome; groundwater
1611
1536
-
Gly
GCC
[ENA]
¢þ
>WENV183677948
ORJL011816282
[ORJL] groundwater metagenome; groundwater
565
640
+
Gly
GCC
[ENA]
¢þ
>WENV183682532
ORMF010454883
[ORMF] groundwater metagenome; groundwater
1230
1305
+
Gly
GCC
[ENA]
¢þ
>WENV183683860
ORMF010630436
[ORMF] groundwater metagenome; groundwater
4692
4767
+
Gly
GCC
[ENA]
¢þ
>WENV183690326
ORMF011578848
[ORMF] groundwater metagenome; groundwater
435
510
+
Gly
GCC
[ENA]
¢þ
>WENV183703713
PDVJ01037928
[PDVJ] alkali sediment metagenome; glacial lake sediment
196
121
-
Gly
GCC
[ENA]
¢þ
>WENV170010739
APMI01027024
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
7974
8049
+
Gly
GCC
[ENA]
¢þ
>WENV170010917
APMI01035089
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1656
1731
+
Gly
GCC
[ENA]
¢þ
>WENV170010919
APMI01035089
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1857
1932
+
Gly
GCC
[ENA]
¢þ
>WENV170012279
APMI01145673
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
35
110
+
Gly
GCC
[ENA]
¢þ
>WENV170551538
CXWJ01011550
[CXWJ] wastewater metagenome; activated sludge
1344
1269
-
Gly
GCC
[ENA]
¢þ
>WENV170553495
CXWK01020865
[CXWK] wastewater metagenome; activated sludge
1529
1454
-
Gly
GCC
[ENA]
¢þ
>WENV170571866
FLOH01000348
[FLOH] marine metagenome; water
24731
24806
+
Gly
GCC
[ENA]
¢þ
>WENV170650106
JRYD01011408
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
1727
1802
+
Gly
GCC
[ENA]
¢þ
>WENV170650436
JRYE01000344
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
523
448
-
Gly
GCC
[ENA]
¢þ
>WENV170650467
JRYE01001143
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
79
154
+
Gly
GCC
[ENA]
¢þ
>WENV170651852
JRYG01006671
[JRYG] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
15751
15826
+
Gly
GCC
[ENA]
¢þ
>WENV170651854
JRYG01006671
[JRYG] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
15971
16046
+
Gly
GCC
[ENA]
¢þ
>WENV170652542
JRYH01005587
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
1308
1383
+
Gly
GCC
[ENA]
¢þ
>WENV170652610
JRYH01008942
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
3698
3623
-
Gly
GCC
[ENA]
¢þ
>WENV170653025
JRYI01000895
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
2367
2442
+
Gly
GCC
[ENA]
¢þ
>WENV170653159
JRYI01008633
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
1520
1595
+
Gly
GCC
[ENA]
¢þ
>WENV170653429
JRYJ01000710
[JRYJ] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
25310
25385
+
Gly
GCC
[ENA]
¢þ
>WENV170653431
JRYJ01000710
[JRYJ] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
25530
25605
+
Gly
GCC
[ENA]
¢þ
>C181187720
CP030092
Betaproteobacteria
Massilia sp. YMA4 [CP030092]
601143
601218
+
Gly
GCC
-
¡û
>C181187721
CP030092
Betaproteobacteria
Massilia sp. YMA4 [CP030092]
601293
601368
+
Gly
GCC
-
¡û
>C181187722
CP030092
Betaproteobacteria
Massilia sp. YMA4 [CP030092]
601408
601483
+
Gly
GCC
-
¡û
>C181187724
CP030092
Betaproteobacteria
Massilia sp. YMA4 [CP030092]
601657
601732
+
Gly
GCC
-
¡û
>C181187725
CP030092
Betaproteobacteria
Massilia sp. YMA4 [CP030092]
713349
713424
+
Gly
GCC
-
¡û
>W09100861
AADF01000001
Betaproteobacteria
Dechloromonas aromatica RCB [AADF]
597551
597626
+
Gly
GCC
[ENA]
¡û
>W09100863
AADF01000001
Betaproteobacteria
Dechloromonas aromatica RCB [AADF]
597771
597846
+
Gly
GCC
[ENA]
¡û
>W09100893
AADF01000006
Betaproteobacteria
Dechloromonas aromatica RCB [AADF]
69394
69319
-
Gly
GCC
[ENA]
¡û
>W09100894
AADF01000006
Betaproteobacteria
Dechloromonas aromatica RCB [AADF]
64397
64322
-
Gly
GCC
[ENA]
¡û
>W1930020297
MWUM01000028
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
68456
68381
-
Gly
GCC
[ENA]
¡û
>W1910183553
BJNV01000013
Betaproteobacteria
Zoogloea ramigera NBRC 15342 [BJNV]
52321
52246
-
Gly
GCC
[ENA]
¡û
>W1910183555
BJNV01000013
Betaproteobacteria
Zoogloea ramigera NBRC 15342 [BJNV]
52116
52041
-
Gly
GCC
[ENA]
¡û
>W1910183563
BJNV01000035
Betaproteobacteria
Zoogloea ramigera NBRC 15342 [BJNV]
906
831
-
Gly
GCC
[ENA]
¡û
>W1910183578
BJNV01000051
Betaproteobacteria
Zoogloea ramigera NBRC 15342 [BJNV]
25945
26020
+
Gly
GCC
[ENA]
¡û
>W1910828066
MWUM01000006
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
197181
197256
+
Gly
GCC
[ENA]
¡û
>W1910828078
MWUM01000014
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
78
3
-
Gly
GCC
[ENA]
¡û
>W1910828084
MWUM01000023
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
25313
25388
+
Gly
GCC
[ENA]
¡û
>W1910828101
MWUM01000165
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
200
275
+
Gly
GCC
[ENA]
¡û
>W1810062378
PDOB01000026
Betaproteobacteria
Massilia psychrophila JCM 30813 [PDOB]
1951
1876
-
Gly
GCC
[ENA]
¡û
>W1810062379
PDOB01000026
Betaproteobacteria
Massilia psychrophila JCM 30813 [PDOB]
1804
1729
-
Gly
GCC
[ENA]
¡û
>W1810068115
PDZH01000078
Betaproteobacteria
Chitinimonas sp. BJB300 [PDZH]
7233
7308
+
Gly
GCC
[ENA]
¡û
>W1810068116
PDZH01000078
Betaproteobacteria
Chitinimonas sp. BJB300 [PDZH]
7341
7416
+
Gly
GCC
[ENA]
¡û
>W1810068117
PDZH01000078
Betaproteobacteria
Chitinimonas sp. BJB300 [PDZH]
7447
7522
+
Gly
GCC
[ENA]
¡û
>W1810068325
PDZK01000001
Betaproteobacteria
Janthinobacterium sp. BJB446 [PDZK]
2614325
2614250
-
Gly
GCC
[ENA]
¡û
>W1810068326
PDZK01000001
Betaproteobacteria
Janthinobacterium sp. BJB446 [PDZK]
2614157
2614082
-
Gly
GCC
[ENA]
¡û
>W1810068327
PDZK01000001
Betaproteobacteria
Janthinobacterium sp. BJB446 [PDZK]
2614013
2613938
-
Gly
GCC
[ENA]
¡û
>W1810068328
PDZK01000001
Betaproteobacteria
Janthinobacterium sp. BJB446 [PDZK]
2613881
2613806
-
Gly
GCC
[ENA]
¡û
>W1810068329
PDZK01000001
Betaproteobacteria
Janthinobacterium sp. BJB446 [PDZK]
2613722
2613647
-
Gly
GCC
[ENA]
¡û
>W1810121324
PHUG01000001
Betaproteobacteria
Janthinobacterium sp. 64 [PHUG]
1715905
1715830
-
Gly
GCC
[ENA]
¡û
>W1810121325
PHUG01000001
Betaproteobacteria
Janthinobacterium sp. 64 [PHUG]
1715737
1715662
-
Gly
GCC
[ENA]
¡û
>W1810121326
PHUG01000001
Betaproteobacteria
Janthinobacterium sp. 64 [PHUG]
1715590
1715515
-
Gly
GCC
[ENA]
¡û
>W1810121327
PHUG01000001
Betaproteobacteria
Janthinobacterium sp. 64 [PHUG]
1715459
1715384
-
Gly
GCC
[ENA]
¡û
>W1810121328
PHUG01000001
Betaproteobacteria
Janthinobacterium sp. 64 [PHUG]
1715294
1715219
-
Gly
GCC
[ENA]
¡û
>SRA1003939
SRR002328.50074
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
48
123
+
Gly
GCC
[SRA]
>C151071189
CP010554
Betaproteobacteria
Rugosibacter aromaticivorans Ca6 [CP010554]
535708
535783
+
Gly
GCC
[Ensembl]
¡û
>C161053726
CP013235
Betaproteobacteria
Collimonas arenae Ter282 [CP013235]
1527649
1527724
+
Gly
GCC
[Ensembl]
¡û
>C161053728
CP013235
Betaproteobacteria
Collimonas arenae Ter282 [CP013235]
1527931
1528006
+
Gly
GCC
[Ensembl]
¡û
>W1611063337
MBFM01000003
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
231557
231632
+
Gly
GCC
[ENA]
¡û
>W1611063375
MBFM01000005
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
52621
52546
-
Gly
GCC
[ENA]
¡û
>WENV080230
AATO01014972
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
36
113
+
Gly
GCC
[ENA]
>W1710720623
LFKP01000005
Betaproteobacteria
Janthinobacterium lividum [LFKP]
487796
487871
+
Gly
GCC
[ENA]
¡û
>W1710720624
LFKP01000005
Betaproteobacteria
Janthinobacterium lividum [LFKP]
487964
488039
+
Gly
GCC
[ENA]
¡û
>W1710720625
LFKP01000005
Betaproteobacteria
Janthinobacterium lividum [LFKP]
488111
488186
+
Gly
GCC
[ENA]
¡û
>W1710720626
LFKP01000005
Betaproteobacteria
Janthinobacterium lividum [LFKP]
488243
488318
+
Gly
GCC
[ENA]
¡û
>W1710720627
LFKP01000005
Betaproteobacteria
Janthinobacterium lividum [LFKP]
488408
488483
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK