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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.253638 (11 seq.)
>C171057488
CP017116
Bacillota
Erysipelothrix rhusiopathiae WH13013 [CP017116]
42408
42333
-
Arg
TCT
-
¡û
>W131169192
AREO01000002
Bacillota
Erysipelothrix tonsillarum DSM 14972 [AREO]
48386
48311
-
Arg
TCT
[ENA]
¡û
>WENV170688343
LFRM01240703
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1808
1883
+
Arg
TCT
[ENA]
¢þ
>C181185430
CP029804
Bacillota
Erysipelothrix rhusiopathiae ML101 [CP029804]
1170705
1170630
-
Arg
TCT
-
¡û
>C191108233
CP033601
Bacillota
Erysipelothrix rhusiopathiae KC-Sb-R1 [CP033601]
678089
678164
+
Arg
TCT
-
¡û
>C191122087
CP034234
Bacillota
Erysipelothrix piscisicarius 15TAL0474 [CP034234]
914130
914205
+
Arg
TCT
-
¡û
>C191211044
LR134439
Bacillota
Erysipelothrix rhusiopathiae NCTC8163 [LR134439]
706953
707028
+
Arg
TCT
-
¡û
>W09128022
ACLK01000029
Bacillota
Erysipelothrix rhusiopathiae ATCC 19414 [ACLK]
172120
172195
+
Arg
TCT
[ENA]
¡û
>C151007199
CP005079
Bacillota
Erysipelothrix rhusiopathiae SY1027 [CP005079]
670864
670789
-
Arg
TCT
[Ensembl]
¡û
>C11108892
AP012027
Bacillota
Erysipelothrix rhusiopathiae str. Fujisawa [AP012027]
1181446
1181371
-
Arg
TCT
[Ensembl]
¡û
>C161078637
CP014861
Bacillota
Erysipelothrix rhusiopathiae GXBY-1 [CP014861]
762437
762512
+
Arg
TCT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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