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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254798 (78 seq.)
>A171000004
AM774415
Euryarchaeota
Halobacterium salinarum R1 DSM 671 [AM774415]
400936
401009
+
Gln
TTG
-
¡û
>A171000722
CP001687
Euryarchaeota
Halorhabdus utahensis DSM 12940 [CP001687]
372944
373016
+
Gln
TTG
-
¡û
>A171000783
CP001688
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [CP001688]
2815219
2815291
+
Gln
TTG
-
¡û
>A171002635
CP002921
Euryarchaeota
Haloarcula hispanica ATCC 33960 CGMCC 1.2049 [CP002921, CP002922]
2264412
2264340
-
Gln
TTG
-
¡û
>A171003085
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
875614
875686
+
Gln
TTG
-
¡û
>A171003174
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
3240526
3240453
-
Gln
TTG
-
¡û
>A171003968
CP006884
Euryarchaeota
Haloarcula hispanica N601 [CP006884, CP006885]
2275845
2275773
-
Gln
TTG
-
¡û
>A171005825
CP010529
Euryarchaeota
Haloarcula sp. CBA1115 [CP010529]
880052
879979
-
Gln
TTG
-
¡û
>A171006949
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
571944
572016
+
Gln
TTG
-
¡û
>A171007226
HF571520
Euryarchaeota
Halorhabdus tiamatea SARL4B type strain: SARL4B [HF571520]
534436
534508
+
Gln
TTG
-
¡û
>A171007296
HF582854
Euryarchaeota
Natronomonas moolapensis 8.8.11 [HF582854]
662674
662602
-
Gln
TTG
-
¡û
>A171007461
LN831302
Euryarchaeota
Halobacterium hubeiense JI20-1 [LN831302]
737082
737009
-
Gln
TTG
-
¡û
>A178000282
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
3173976
3174079
+
Gln
TTG
-
¡û
>A178000361
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
960785
960683
-
Gln
TTG
-
¡û
>A178000674
CP016804
Euryarchaeota
Halodesulfurarchaeum formicicum HSR6 [CP016804]
977203
977304
+
Gln
TTG
-
¡û
>A178000692
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
630631
630507
-
Gln
TTG
-
¡û
>A178000699
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
4130182
4130285
+
Gln
TTG
-
¡û
>WENV180273648
OBEU01004100
[OBEU] marine metagenome; marine
44
116
+
Gln
TTG
[ENA]
¢þ
>WENV180318213
OBKM01000098
[OBKM] metagenome; water
2852
2780
-
Gln
TTG
[ENA]
¢þ
>WENV180318324
OBKM01000402
[OBKM] metagenome; water
1278
1205
-
Gln
TTG
[ENA]
¢þ
>WENV180318328
OBKM01000416
[OBKM] metagenome; water
2352
2424
+
Gln
TTG
[ENA]
¢þ
>WENV180318466
OBKM01001104
[OBKM] metagenome; water
5928
5855
-
Gln
TTG
[ENA]
¢þ
>WENV180318704
OBKM01005546
[OBKM] metagenome; water
2993
3067
+
Gln
TTG
[ENA]
¢þ
>WENV170009213
APHM01021700
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
3314
3388
+
Gln
TTG
[ENA]
¢þ
>At0797
AE004437
Euryarchaeota
Halobacterium salinarum NRC-1; ATCC 700922 [AE004437]
409659
409731
+
Gln
TTG
[Ensembl]
¡û
>WENV170659861
JXWS01012777
[JXWS] soil metagenome; rice field; elevated CO2
326
253
-
Gln
TTG
[ENA]
¢þ
>WENV170660021
JXWS01091371
[JXWS] soil metagenome; rice field; elevated CO2
3
76
+
Gln
TTG
[ENA]
¢þ
>WENV170660033
JXWS01098248
[JXWS] soil metagenome; rice field; elevated CO2
185
257
+
Gln
TTG
[ENA]
¢þ
>WENV170680045
LFCJ01002916
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
11361
11433
+
Gln
TTG
[ENA]
¢þ
>WENV170681177
LFFM01000171
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
23034
23106
+
Gln
TTG
[ENA]
¢þ
>WENV170681730
LFFM01002337
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
10157
10085
-
Gln
TTG
[ENA]
¢þ
>WENV170681778
LFFM01002653
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
11361
11433
+
Gln
TTG
[ENA]
¢þ
>WENV170703002
LKMJ01005427
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
653
581
-
Gln
TTG
[ENA]
¢þ
>WENV170703409
LKMJ01011160
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
5383
5311
-
Gln
TTG
[ENA]
¢þ
>WENV170703750
LKMJ01016341
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
6558
6486
-
Gln
TTG
[ENA]
¢þ
>W1910006725
BBJO01000047
Euryarchaeota
Halobellus rufus CBA1103 [BBJO]
29266
29194
-
Gln
TTG
[ENA]
¡û
>W1910006856
BBMO01000001
Euryarchaeota
Halapricum salinum CBA1105 [BBMO]
455207
455280
+
Gln
TTG
[ENA]
¡û
>W1910226909
FNFE01000002
Euryarchaeota
Natronorubrum texcoconense B4,CECT 8067,JCM 17497 [FNFE]
211228
211300
+
Gln
TTG
[ENA]
¡û
>W1910228406
FNPB01000001
Euryarchaeota
Halobellus clavatus CGMCC 1.10118 [FNPB]
166297
166370
+
Gln
TTG
[ENA]
¡û
>W1910228609
FNVN01000002
Euryarchaeota
Halobellus limi CGMCC 1.10331 [FNVN]
157847
157775
-
Gln
TTG
[ENA]
¡û
>W1910229310
FNWL01000001
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
496071
495999
-
Gln
TTG
[ENA]
¡û
>W1910229579
FNYR01000011
Euryarchaeota
Halohasta litchfieldiae DSM 22187 [FNYR]
79226
79298
+
Gln
TTG
[ENA]
¡û
>W1910230039
FOJA01000001
Euryarchaeota
Halobacterium jilantaiense CGMCC 1.5337 [FOJA]
962997
962925
-
Gln
TTG
[ENA]
¡û
>W1910230459
FORO01000038
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
29549
29477
-
Gln
TTG
[ENA]
¡û
>W1910340490
FTNP01000001
Euryarchaeota
Natronorubrum daqingense CGMCC 1.8909 [FTNP]
480343
480271
-
Gln
TTG
[ENA]
¡û
>W1910572702
JNCS01000002
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
30440
30513
+
Gln
TTG
[ENA]
¡û
>W1911591350
PKKI01000059
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
12908
12836
-
Gln
TTG
[ENA]
¡û
>W1911682334
QKNY01000003
Euryarchaeota
Halonotius aquaticus F13-13 [QKNY]
107410
107337
-
Gln
TTG
[ENA]
¡û
>W1911696482
QMDW01000019
Euryarchaeota
Halonotius pteroides CECT 7525 [QMDW]
2536
2464
-
Gln
TTG
[ENA]
¡û
>W1911709593
QPLQ01000001
Euryarchaeota
Haloarcula sp. Atlit-47R [QPLQ]
438196
438124
-
Gln
TTG
[ENA]
¡û
>W1911709617
QPLR01000001
Euryarchaeota
Halobellus sp. Atlit-31R [QPLR]
482508
482581
+
Gln
TTG
[ENA]
¡û
>W1911769961
QXIJ01000001
Euryarchaeota
Halobellus sp. Atlit-38R [QXIJ]
45359
45286
-
Gln
TTG
[ENA]
¡û
>W1610000821
ABTY01000001
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [ABTY]
910605
910533
-
Gln
TTG
[ENA]
¡û
>W1610000832
ABTZ01000001
Euryarchaeota
Halorhabdus utahensis DSM 12940 [ABTZ]
1102014
1102086
+
Gln
TTG
[ENA]
¡û
>W1610003250
AFNT02000001
Euryarchaeota
Halorhabdus tiamatea SARL4B [AFNT]
8033
7961
-
Gln
TTG
[ENA]
¡û
>W1610003600
AGCX01000212
Euryarchaeota
Halonotius sp. J07HN4 [AGCX]
13740
13814
+
Gln
TTG
[ENA]
¡û
>W1610004104
AGIM01000011
Euryarchaeota
Natronobacterium gregoryi SP2 [AGIM]
77360
77432
+
Gln
TTG
[ENA]
¡û
>W1610005364
AJVG01000003
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
121122
121049
-
Gln
TTG
[ENA]
¡û
>W1610011911
AOHW01000024
Euryarchaeota
Natronorubrum tibetense GA33 [AOHW]
44772
44699
-
Gln
TTG
[ENA]
¡û
>W1610012024
AOHZ01000018
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
19053
19126
+
Gln
TTG
[ENA]
¡û
>W1610012186
AOIC01000120
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
29459
29387
-
Gln
TTG
[ENA]
¡û
>W1610012361
AOIJ01000062
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
1235
1307
+
Gln
TTG
[ENA]
¡û
>W1610012374
AOIK01000012
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
30365
30440
+
Gln
TTG
[ENA]
¡û
>W1610014144
AOLQ01000042
Euryarchaeota
Haloarcula vallismortis ATCC 29715 [AOLQ]
208593
208520
-
Gln
TTG
[ENA]
¡û
>W1610014286
AOLW01000046
Euryarchaeota
Haloarcula amylolytica JCM 13557 [AOLW]
76346
76418
+
Gln
TTG
[ENA]
¡û
>W1610014375
AOLY01000007
Euryarchaeota
Haloarcula japonica DSM 6131 [AOLY]
321908
321980
+
Gln
TTG
[ENA]
¡û
>W1610014579
AOMD01000016
Euryarchaeota
Halococcus saccharolyticus DSM 5350 [AOMD]
100411
100483
+
Gln
TTG
[ENA]
¡û
>W1610014635
AOME01000070
Euryarchaeota
Halococcus salifodinae DSM 8989 [AOME]
107915
107843
-
Gln
TTG
[ENA]
¡û
>W1610019004
ARPH01000002
Euryarchaeota
Natronorubrum tibetense GA33 [ARPH]
271127
271200
+
Gln
TTG
[ENA]
¡û
>W1610061941
BCNB01000006
Euryarchaeota
Haloarcula sp. CBA1127 [BCNB]
1360057
1360129
+
Gln
TTG
[ENA]
¡û
>W1610082991
CBMA010000030
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
54873
54800
-
Gln
TTG
[ENA]
¡û
>W1610085091
CEML01000002
Euryarchaeota
Halobacterium hubeiense JI20-4 [CEML]
518727
518654
-
Gln
TTG
[ENA]
¡û
>W1610085110
CEMN01000001
Euryarchaeota
Halobacterium hubeiense JI20-3 [CEMN]
1945544
1945617
+
Gln
TTG
[ENA]
¡û
>W1610085149
CEMO01000001
Euryarchaeota
Halobacterium hubeiense JI20-2 [CEMO]
1988870
1988943
+
Gln
TTG
[ENA]
¡û
>W1610085188
CEMP01000001
Euryarchaeota
Halobacterium hubeiense JI20-6 [CEMP]
2030798
2030871
+
Gln
TTG
[ENA]
¡û
>W1610085290
CEMR01000002
Euryarchaeota
Halobacterium hubeiense JI20-5 [CEMR]
527603
527530
-
Gln
TTG
[ENA]
¡û
>W1610682178
LKML01000068
Euryarchaeota
Haloferacaceae archaeon B1-Br10_E2g22 [LKML]
11361
11433
+
Gln
TTG
[ENA]
¡û
>W1610881044
LRHL01000043
Euryarchaeota
Haloarcula sp. K1 [LRHL]
814582
814655
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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