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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254900 (30 seq.)
>W1711091099
LTBC01000007
Bacillota
Moorella mulderi DSM 14980 [LTBC]
97378
97303
-
Lys
TTT
[ENA]
¡û
>W1711352286
MDDB01000004
Bacillota
Moorella thermoacetica [MDDB]
126588
126663
+
Lys
TTT
[ENA]
¡û
>W1711352301
MDDC01000001
Bacillota
Moorella thermoacetica [MDDC]
81592
81667
+
Lys
TTT
[ENA]
¡û
>W1711352381
MDDD01000007
Bacillota
Moorella thermoacetica [MDDD]
18500
18425
-
Lys
TTT
[ENA]
¡û
>W1711352441
MDDE01000007
Bacillota
Moorella thermoacetica [MDDE]
113040
112965
-
Lys
TTT
[ENA]
¡û
>W1711428554
MIHH01000009
Bacillota
Moorella thermoacetica [MIHH]
83693
83618
-
Lys
TTT
[ENA]
¡û
>W1711428585
MIIF01000005
Bacillota
Moorella thermoacetica [MIIF]
93802
93727
-
Lys
TTT
[ENA]
¡û
>C171055179
CP017019
Bacillota
Moorella thermoacetica DSM 103132 [CP017019]
520628
520703
+
Lys
TTT
-
¡û
>C171058949
CP017237
Bacillota
Moorella thermoacetica DSM 103284 [CP017237]
441815
441890
+
Lys
TTT
-
¡û
>C014168
CP000232
Bacillota
Moorella thermoacetica [CP000232]
541206
541281
+
Lys
TTT
[Ensembl]
¡û
>WENV180715713
ODFW01033196
[ODFW] human metagenome; G_DNA_Stool
89
164
+
Lys
TTT
[ENA]
¢þ
>WENV180829728
ODKA01366985
[ODKA] human metagenome; G_DNA_Stool
136
61
-
Lys
TTT
[ENA]
¢þ
>W141229809
BARR01000033
Bacillota
Moorella thermoacetica Y72 [BARR]
32881
32956
+
Lys
TTT
[ENA]
¡û
>WENV170564084
CZCB01048023
[CZCB] anaerobic digester metagenome; anaerobic digester
452
527
+
Lys
TTT
[ENA]
¢þ
>WENV170678868
LDZU01005531
[LDZU] terrestrial metagenome; oil reservoir sample SB2
10118
10043
-
Lys
TTT
[ENA]
¢þ
>WENV170679072
LDZU01007021
[LDZU] terrestrial metagenome; oil reservoir sample SB2
823
898
+
Lys
TTT
[ENA]
¢þ
>WENV170685882
LFRM01113951
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1141
1066
-
Lys
TTT
[ENA]
¢þ
>C191073425
CP031054
Bacillota
Moorella thermoacetica 39073-HH [CP031054]
547929
548004
+
Lys
TTT
-
¡û
>W09100948
AADT03000032
Bacillota
Moorella thermoacetica ATCC 39073 [AADT]
26278
26203
-
Lys
TTT
[ENA]
¡û
>W141801487
JPEE01000007
Bacillota
Peptococcaceae bacterium SCADC1_2_3 [JPEE]
20005
19930
-
Lys
TTT
[ENA]
¡û
>W1910180088
BJKN01000003
Bacillota
Moorella sp. E308F [BJKN]
103123
103198
+
Lys
TTT
[ENA]
¡û
>W1910180142
BJKO01000001
Bacillota
Moorella sp. E306M [BJKO]
577892
577817
-
Lys
TTT
[ENA]
¡û
>W1810010438
BFFN01000005
Bacillota
Moorella sp. Hama-1 [BFFN]
91699
91774
+
Lys
TTT
[ENA]
¡û
>W1810367270
PVXL01000021
Bacillota
Moorella stamsii DSM 26271 [PVXL]
58284
58359
+
Lys
TTT
[ENA]
¡û
>C151094354
CP012369
Bacillota
Moorella thermoacetica DSM 521 [CP012369]
455515
455590
+
Lys
TTT
-
¡û
>C151094404
CP012370
Bacillota
Moorella thermoacetica DSM 2955 [CP012370]
539402
539477
+
Lys
TTT
-
¡û
>W1510100267
CELZ01000034
Bacillota
Moorella glycerini NMP [CELZ]
119984
119909
-
Lys
TTT
[ENA]
¡û
>W1610613553
LGFZ01000023
Bacillota
Desulfotomaculum sp. 46_296 [LGFZ]
10192
10117
-
Lys
TTT
[ENA]
¡û
>W1610925298
LTBC01000007
Bacillota
Moorella mulderi DSM 14980 [LTBC]
97378
97303
-
Lys
TTT
[ENA]
¡û
>W1710734725
LGFZ01000023
Bacillota
Desulfotomaculum sp. 46_296 [LGFZ]
10192
10117
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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