This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.25643 (37 seq.)
>W1710797224
LJSW01000013
Alphaproteobacteria
Erythrobacteraceae bacterium HL-111 [LJSW]
61374
61284
-
Ser
GGA
[ENA]
¡û
>W1711253308
LYPP01000001
Alphaproteobacteria
Croceicoccus marinus [LYPP]
1552587
1552497
-
Ser
GGA
[ENA]
¡û
>W1711501933
MKSE01000008
Alphaproteobacteria
Altererythrobacter sp. 66-12 [MKSE]
36277
36187
-
Ser
GGA
[ENA]
¡û
>C171056108
CP017057
Alphaproteobacteria
Erythrobacter litoralis DSM 8509 [CP017057]
829955
830045
+
Ser
GGA
-
¡û
>C171072708
CP018097
Alphaproteobacteria
Aurantiacibacter gangjinensis CGMCC 1.15024 [CP018097, CP018098]
1231148
1231238
+
Ser
GGA
-
¡û
>WENV181233718
OFET01000061
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
17355
17445
+
Ser
GGA
[ENA]
¢þ
>W141230399
BASZ01000008
Alphaproteobacteria
Caenibius tardaugens NBRC 16725 [BASZ]
162926
163016
+
Ser
GGA
[ENA]
¡û
>WENV183729038
PJTQ01002943
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
2402
2312
-
Ser
GGA
[ENA]
¢þ
>WENV183738466
PJUE01000003
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
653349
653439
+
Ser
GGA
[ENA]
¢þ
>WENV183740706
PJUF01007153
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
2347
2257
-
Ser
GGA
[ENA]
¢þ
>WENV183748158
PPFU01016094
[PPFU] hypolithon metagenome; Antarctic Hypolithon
10326
10236
-
Ser
GGA
[ENA]
¢þ
>WENV170015863
AZIJ01002038
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
547
637
+
Ser
GGA
[ENA]
¢þ
>WENV170191794
CEPD01063370
[CEPD] marine metagenome genome assembly TARA_064_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
783
693
-
Ser
GGA
[ENA]
¢þ
>WENV170278592
CERQ01114238
[CERQ] marine metagenome genome assembly TARA_065_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
9445
9355
-
Ser
GGA
[ENA]
¢þ
>WENV170908492
MDTE01065280
[MDTE] marine metagenome; seawater
89231
89321
+
Ser
GGA
[ENA]
¢þ
>C191121054
CP034179
Alphaproteobacteria
Caenibius tardaugens NBRC 16725 [CP034179]
767515
767605
+
Ser
GGA
-
¡û
>C191171250
CP039704
Alphaproteobacteria
Hankyongella ginsenosidimutans W1-2-3 [CP039704]
368108
368018
-
Ser
GGA
-
¡û
>W1910822155
MWMO01000009
Alphaproteobacteria
Novosphingobium sp. PC22D [MWMO]
49677
49767
+
Ser
GGA
[ENA]
¡û
>W1911767924
QXFK01000018
Alphaproteobacteria
Pelagerythrobacter aerophilus Ery1 [QXFK]
481808
481718
-
Ser
GGA
[ENA]
¡û
>W1810785009
QRBB01000001
Alphaproteobacteria
Alteriqipengyuania lutimaris S-5 [QRBB]
26295
26205
-
Ser
GGA
[ENA]
¡û
>C151048365
CP009291
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [CP009291]
3138758
3138848
+
Ser
GGA
[Ensembl]
¡û
>C11116161
FR856862
Alphaproteobacteria
Novosphingobium sp. PP1Y [FR856862]
935471
935561
+
Ser
GGA
[Ensembl]
¡û
>W1511590535
LBHB01000002
Alphaproteobacteria
Aurantiacibacter luteus KA37 [LBHB]
1063548
1063638
+
Ser
GGA
[ENA]
¡û
>W1511590583
LBHC01000002
Alphaproteobacteria
Aurantiacibacter gangjinensis K7-2 [LBHC]
889872
889962
+
Ser
GGA
[ENA]
¡û
>C161034112
CP011344
Alphaproteobacteria
Citromicrobium sp. JL477 [CP011344]
920300
920390
+
Ser
GGA
-
¡û
>WENV071240
AACY023840218
Marine microbial communities from Global Ocean Sampling (GOS)
331
423
+
Ser
GGA
[ENA]
>W1610576035
LAIH01000002
Alphaproteobacteria
Citromicrobium sp. JL31 [LAIH]
291353
291263
-
Ser
GGA
[ENA]
¡û
>W1610576165
LAPR01000001
Alphaproteobacteria
Citromicrobium sp. JL1351 [LAPR]
389362
389452
+
Ser
GGA
[ENA]
¡û
>W1610576233
LAPS01000006
Alphaproteobacteria
Citromicrobium sp. WPS32 [LAPS]
272679
272769
+
Ser
GGA
[ENA]
¡û
>W1610584033
LBLY01000003
Alphaproteobacteria
Citromicrobium sp. RCC1885 [LBLY]
27458
27548
+
Ser
GGA
[ENA]
¡û
>W1610661181
LJSW01000013
Alphaproteobacteria
Erythrobacteraceae bacterium HL-111 [LJSW]
61374
61284
-
Ser
GGA
[ENA]
¡û
>W1611004979
LXQM01000013
Alphaproteobacteria
Croceibacterium salegens XY-R17 [LXQM]
69712
69802
+
Ser
GGA
[ENA]
¡û
>W1611017845
LYPP01000001
Alphaproteobacteria
Croceicoccus marinus [LYPP]
1552587
1552497
-
Ser
GGA
[ENA]
¡û
>W1710694299
LAIH01000002
Alphaproteobacteria
Citromicrobium sp. JL31 [LAIH]
291353
291263
-
Ser
GGA
[ENA]
¡û
>W1710694527
LAPR01000001
Alphaproteobacteria
Citromicrobium sp. JL1351 [LAPR]
389362
389452
+
Ser
GGA
[ENA]
¡û
>W1710694595
LAPS01000006
Alphaproteobacteria
Citromicrobium sp. WPS32 [LAPS]
272679
272769
+
Ser
GGA
[ENA]
¡û
>W1710703181
LBLY01000003
Alphaproteobacteria
Citromicrobium sp. RCC1885 [LBLY]
27458
27548
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK