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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.25738 (56 seq.)
>W1710873822
LMNC01000002
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
490351
490440
+
Ser
TGA
[ENA]
¡û
>W1710876091
LMOY01000001
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
799449
799360
-
Ser
TGA
[ENA]
¡û
>W1711294751
MABH01000058
Alphaproteobacteria
Cereibacter johrii [MABH]
5613
5524
-
Ser
TGA
[ENA]
¡û
>C171037027
CP015211
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-13 [CP015210, CP015211]
373319
373408
+
Ser
TGA
-
¡û
>W131052421
AMYY01000007
Alphaproteobacteria
alpha proteobacterium L41A [AMYY]
21208
21119
-
Ser
TGA
[ENA]
¡û
>W131058625
ANFS01000001
Alphaproteobacteria
Rhodobacter sp. AKP1 [ANFS]
327530
327619
+
Ser
TGA
[ENA]
¡û
>C019252
CP000144
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [CP000143, CP000144]
373306
373395
+
Ser
TGA
[Ensembl]
¡û
>C019348
CP000578
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17029 [CP000577, CP000578]
1191159
1191248
+
Ser
TGA
[Ensembl]
¡û
>WENV180231959
OBCO01000042
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
333259
333170
-
Ser
TGA
[ENA]
¢þ
>WENV180232950
OBCP01000041
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
333259
333170
-
Ser
TGA
[ENA]
¢þ
>WENV180398148
OBPZ01094124
[OBPZ] marine metagenome; ENVO:00002010
135
46
-
Ser
TGA
[ENA]
¢þ
>w001245
AAAE01000110
Alphaproteobacteria
Cereibacter sphaeroides [AAAE]
14188
14277
+
Ser
TGA
[ENA]
¡û
>WENV180569895
OCLR01000705
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
13677
13588
-
Ser
TGA
[ENA]
¢þ
>WENV180570840
OCLS01000716
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
13679
13590
-
Ser
TGA
[ENA]
¢þ
>WENV180571311
OCLT01000043
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
333259
333170
-
Ser
TGA
[ENA]
¢þ
>WENV180573558
OCLW01000041
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
333259
333170
-
Ser
TGA
[ENA]
¢þ
>WENV180639625
OCRL01000045
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
333259
333170
-
Ser
TGA
[ENA]
¢þ
>WENV180640552
OCRM01000041
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
333258
333169
-
Ser
TGA
[ENA]
¢þ
>WENV180878734
ODLX01024326
[ODLX] human metagenome; G_DNA_R_Retroauricular crease
129
217
+
Ser
TGA
[ENA]
¢þ
>WENV181371096
OFQU01024613
[OFQU] wastewater metagenome; Exp Tend CN 90WW
565
654
+
Ser
TGA
[ENA]
¢þ
>WENV181384327
OFRI01000185
[OFRI] wastewater metagenome; Exp Tend VB 90WW
2882
2971
+
Ser
TGA
[ENA]
¢þ
>W08010829
ABRU01000039
Alphaproteobacteria
Brevundimonas sp. BAL3 [ABRU]
68167
68081
-
Ser
TGA
[ENA]
¡û
>WENV183724257
PJQE01003916
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
2702
2613
-
Ser
TGA
[ENA]
¢þ
>WENV170003483
AGTN01352010
[AGTN] bioreactor metagenome; poplar biomass
188
99
-
Ser
TGA
[ENA]
¢þ
>WENV170658956
JUGB01001620
[JUGB] scorpion gut metagenome; ten pooled guts of food-deprived Vaejovis mexicanus smith and Centruroides limpidus
985
896
-
Ser
TGA
[ENA]
¢þ
>WENV170784103
MCHG01000016
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
40316
40405
+
Ser
TGA
[ENA]
¢þ
>C181017259
CP015288
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-20 [CP015287, CP015288]
373258
373347
+
Ser
TGA
-
¡û
>C181056248
CP022048
Alphaproteobacteria
Brevundimonas vesicularis FDAARGOS_289 [CP022048]
3185395
3185306
-
Ser
TGA
-
¡û
>C181191144
CP030272
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [CP030271, CP030272]
373255
373344
+
Ser
TGA
-
¡û
>W09104794
AAMF01000012
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17029 [AAMF]
50029
50118
+
Ser
TGA
[ENA]
¡û
>C191151047
CP036420
Alphaproteobacteria
Cereibacter sphaeroides HJ [CP036419, CP036420]
259126
259037
-
Ser
TGA
-
¡û
>C191166111
CP039435
Alphaproteobacteria
Brevundimonas sp. SGAir0440 [CP039435]
2084749
2084838
+
Ser
TGA
-
¡û
>W141712431
JMQR01000010
Alphaproteobacteria
Brevundimonas sp. EAKA [JMQR]
24923
24834
-
Ser
TGA
[ENA]
¡û
>W1910548868
FZOV01000003
Alphaproteobacteria
Cereibacter sphaeroides DSM 18937 [FZOV]
376202
376113
-
Ser
TGA
[ENA]
¡û
>W1910725225
MGLJ01000315
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_67_30 [MGLJ]
12425
12336
-
Ser
TGA
[ENA]
¡û
>C09109084
CP001151
Alphaproteobacteria
Cereibacter sphaeroides KD131 KD131; KCTC 12085 [CP001150, CP001151]
402820
402909
+
Ser
TGA
[Ensembl]
¡û
>W1911749459
QWGP01000019
Alphaproteobacteria
Cereibacter sphaeroides FY [QWGP]
44312
44401
+
Ser
TGA
[ENA]
¡û
>W1911766281
QXDK01000011
Alphaproteobacteria
Cereibacter sphaeroides SCJ [QXDK]
80442
80531
+
Ser
TGA
[ENA]
¡û
>W1810116264
PHOB01000027
Alphaproteobacteria
Cereibacter sphaeroides YL101 [PHOB]
9273
9184
-
Ser
TGA
[ENA]
¡û
>W1810463839
PZZW01000004
Alphaproteobacteria
Cereibacter johrii JA192 [PZZW]
329152
329241
+
Ser
TGA
[ENA]
¡û
>W1810693158
QLLC01000010
Alphaproteobacteria
Brevundimonas bullata HAMBI_262 [QLLC]
66615
66526
-
Ser
TGA
[ENA]
¡û
>W1810699106
QMCC01000005
Alphaproteobacteria
Cereibacter johrii CDR-SL 7Cii [QMCC]
228577
228488
-
Ser
TGA
[ENA]
¡û
>W1810785170
QRBG01000003
Alphaproteobacteria
Cereibacter sphaeroides f. sp. denitrificans IL106 [QRBG]
123781
123870
+
Ser
TGA
[ENA]
¡û
>W1510639839
CVJQ01000001
Alphaproteobacteria
Phenylobacterium immobile [ATCC 35973] [CVJQ]
1912220
1912131
-
Ser
TGA
[ENA]
¡û
>W1511489451
JWSY01000001
Alphaproteobacteria
Brevundimonas nasdae TPW30 [JWSY]
56371
56282
-
Ser
TGA
[ENA]
¡û
>W1511547879
JZRG01000012
Alphaproteobacteria
Brevundimonas sp. KM4 [JZRG]
56427
56338
-
Ser
TGA
[ENA]
¡û
>W11160207
AFER01000002
Alphaproteobacteria
Cereibacter sphaeroides WS8N [AFER]
563013
563102
+
Ser
TGA
[ENA]
¡û
>C161048387
CP012961
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-8 [CP012960, CP012961]
373257
373346
+
Ser
TGA
-
¡û
>C161089133
CP015511
Alphaproteobacteria
Brevundimonas sp. GW460-12-10-14-LB2 [CP015511]
984976
984887
-
Ser
TGA
[Ensembl]
¡û
>W121076815
AKBU01000002
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [AKBU]
509565
509654
+
Ser
TGA
[ENA]
¡û
>W121102158
AKVW01000002
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [AKVW]
373258
373347
+
Ser
TGA
[ENA]
¡û
>W1610074213
BCWM01000004
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
30124
30035
-
Ser
TGA
[ENA]
¡û
>W1610736168
LMNC01000002
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
490351
490440
+
Ser
TGA
[ENA]
¡û
>W1610738437
LMOY01000001
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
799449
799360
-
Ser
TGA
[ENA]
¡û
>W1710071331
BCWM01000004
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
30124
30035
-
Ser
TGA
[ENA]
¡û
>W1710084619
BDMM01000001
Alphaproteobacteria
Brevundimonas sp. SH203 [BDMM]
53257
53168
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK