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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.258317 (19 seq.)
>W1711705079
MSQD01000001
Bacillota
Thermoanaerobacterium sp. PSU-2 [MSQD]
103553
103478
-
Gln
TTG
[ENA]
¡û
>WENV180096275
MTBK01120470
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
153
78
-
Gln
TTG
[ENA]
¢þ
>WENV180298994
OBJA01859882
[OBJA] soil metagenome; sediment, water from around vicinity
12
87
+
Gln
TTG
[ENA]
¢þ
>WENV180346238
OBLN01045481
[OBLN] sediment metagenome; sediment
120
45
-
Gln
TTG
[ENA]
¢þ
>WENV181230706
OFEK01002492
[OFEK] activated sludge metagenome; Anaerobic digester
8714
8789
+
Gln
TTG
[ENA]
¢þ
>W141193987
AYSN01000060
Bacillota
Thermoanaerobacterium aotearoense SCUT27 [AYSN]
37616
37541
-
Gln
TTG
[ENA]
¡û
>W141238363
BBKT01000049
Bacillota
Thermoanaerobacterium saccharolyticum [BBKT]
4673
4598
-
Gln
TTG
[ENA]
¡û
>WENV170563959
CZCB01039237
[CZCB] anaerobic digester metagenome; anaerobic digester
1226
1301
+
Gln
TTG
[ENA]
¢þ
>WENV170685076
LFRM01071884
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
89
14
-
Gln
TTG
[ENA]
¢þ
>WENV170686618
LFRM01155088
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1275
1200
-
Gln
TTG
[ENA]
¢þ
>C181021925
CP016893
Bacillota
Thermoanaerobacterium thermosaccharolyticum TG57 [CP016893]
446981
446906
-
Gln
TTG
-
¡û
>W09135005
ACVG01000017
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [ACVG]
42888
42963
+
Gln
TTG
[ENA]
¡û
>W1910747705
MINB01000009
Bacillota
Thermoanaerobacterium thermosaccharolyticum GSU5 [MINB]
57569
57494
-
Gln
TTG
[ENA]
¡û
>W1910976726
NKHD01000026
Bacillota
Thermoanaerobacterium thermosaccharolyticum M5 [NKHD]
10076
10001
-
Gln
TTG
[ENA]
¡û
>C10113840
CP002171
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [CP002171]
2067137
2067062
-
Gln
TTG
[Ensembl]
¡û
>C11123298
CP002739
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [CP002739]
789867
789942
+
Gln
TTG
[Ensembl]
¡û
>W11150453
AEVQ01000010
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [AEVQ]
12090
12015
-
Gln
TTG
[ENA]
¡û
>C121007633
CP003184
Bacillota
Thermoanaerobacterium saccharolyticum JW/SL-YS485 [CP003184]
2599627
2599552
-
Gln
TTG
[Ensembl]
¡û
>C131001928
CP003066
Bacillota
Thermoanaerobacterium thermosaccharolyticum M0795 [CP003066]
2113670
2113595
-
Gln
TTG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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