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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266487 (51 seq.)
>A171000021
AM774415
Euryarchaeota
Halobacterium salinarum R1 DSM 671 [AM774415]
1990583
1990656
+
Asp
GTC
-
¡û
>A171003740
CP005962
Euryarchaeota
Salinarchaeum sp. Harcht-Bsk1 [CP005962]
2926651
2926578
-
Asp
GTC
-
¡û
>A171006974
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
2501146
2501073
-
Asp
GTC
-
¡û
>A171006975
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
2500639
2500567
-
Asp
GTC
-
¡û
>WENV180318266
OBKM01000229
[OBKM] metagenome; water
252
180
-
Asp
GTC
[ENA]
¢þ
>WENV170009195
APHM01021611
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
2424
2496
+
Asp
GTC
[ENA]
¢þ
>At0817
AE004437
Euryarchaeota
Halobacterium salinarum NRC-1; ATCC 700922 [AE004437]
2002466
2002538
+
Asp
GTC
[Ensembl]
¡û
>WENV170660966
JXWU01071706
[JXWU] soil metagenome; rice field; organic control Plot
1809
1737
-
Asp
GTC
[ENA]
¢þ
>WENV170679560
LFCJ01000024
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
70128
70056
-
Asp
GTC
[ENA]
¢þ
>WENV170679597
LFCJ01000064
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
39893
39966
+
Asp
GTC
[ENA]
¢þ
>WENV170679871
LFCJ01001119
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
1940
1867
-
Asp
GTC
[ENA]
¢þ
>WENV170680309
LFCJ01007793
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
4575
4502
-
Asp
GTC
[ENA]
¢þ
>WENV170681197
LFFM01000208
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
25211
25284
+
Asp
GTC
[ENA]
¢þ
>WENV170681559
LFFM01001406
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
14942
15015
+
Asp
GTC
[ENA]
¢þ
>WENV170682009
LFFM01004902
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
4927
4854
-
Asp
GTC
[ENA]
¢þ
>WENV170702546
LKMJ01002503
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1940
1867
-
Asp
GTC
[ENA]
¢þ
>WENV170703134
LKMJ01006944
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
251
178
-
Asp
GTC
[ENA]
¢þ
>WENV170703142
LKMJ01007080
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
7351
7279
-
Asp
GTC
[ENA]
¢þ
>WENV170703367
LKMJ01010219
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
8019
7947
-
Asp
GTC
[ENA]
¢þ
>WENV170703572
LKMJ01013884
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4190
4117
-
Asp
GTC
[ENA]
¢þ
>WENV170703868
LKMJ01017754
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4010
3937
-
Asp
GTC
[ENA]
¢þ
>W1910175109
BIXZ01000002
Euryarchaeota
Haloarcula mannanilytica MD-130 MD130-1 [BIXZ]
449380
449306
-
Asp
GTC
[ENA]
¡û
>W1910193784
CVUA01000001
Euryarchaeota
Halolamina sediminis halo-7 halo7 [CVUA]
580637
580712
+
Asp
GTC
[ENA]
¡û
>W1910226928
FNFE01000004
Euryarchaeota
Natronorubrum texcoconense B4,CECT 8067,JCM 17497 [FNFE]
264450
264377
-
Asp
GTC
[ENA]
¡û
>W1910226929
FNFE01000004
Euryarchaeota
Natronorubrum texcoconense B4,CECT 8067,JCM 17497 [FNFE]
264000
263927
-
Asp
GTC
[ENA]
¡û
>W1910228354
FNOF01000002
Euryarchaeota
Haloarcula vallismortis DSM 3756 [FNOF]
211124
211196
+
Asp
GTC
[ENA]
¡û
>W1910228355
FNOF01000002
Euryarchaeota
Haloarcula vallismortis DSM 3756 [FNOF]
211247
211321
+
Asp
GTC
[ENA]
¡û
>W1910228356
FNOF01000002
Euryarchaeota
Haloarcula vallismortis DSM 3756 [FNOF]
211371
211445
+
Asp
GTC
[ENA]
¡û
>W1910229343
FNWL01000003
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
58292
58220
-
Asp
GTC
[ENA]
¡û
>W1910229344
FNWL01000003
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
57924
57852
-
Asp
GTC
[ENA]
¡û
>W1910230621
FOXI01000005
Euryarchaeota
Halolamina pelagica CGMCC 1.10329 [FOXI]
124482
124557
+
Asp
GTC
[ENA]
¡û
>W1910281613
FQWV01000001
Euryarchaeota
Halobaculum gomorrense DSM 9297 [FQWV]
314210
314283
+
Asp
GTC
[ENA]
¡û
>W1910340521
FTNP01000007
Euryarchaeota
Natronorubrum daqingense CGMCC 1.8909 [FTNP]
331
258
-
Asp
GTC
[ENA]
¡û
>W1910340522
FTNP01000010
Euryarchaeota
Natronorubrum daqingense CGMCC 1.8909 [FTNP]
52126
52054
-
Asp
GTC
[ENA]
¡û
>W1910826117
MWPH01000003
Euryarchaeota
Natronolimnobius baerhuensis CGMCC 1.3597 [MWPH]
493985
493913
-
Asp
GTC
[ENA]
¡û
>W1910826118
MWPH01000003
Euryarchaeota
Natronolimnobius baerhuensis CGMCC 1.3597 [MWPH]
490660
490588
-
Asp
GTC
[ENA]
¡û
>W1910828022
MWUK01000003
Euryarchaeota
Halolamina sp. CBA1230 [MWUK]
2491873
2491798
-
Asp
GTC
[ENA]
¡û
>W1610012042
AOHZ01000044
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
74262
74335
+
Asp
GTC
[ENA]
¡û
>W1610012043
AOHZ01000044
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
74849
74922
+
Asp
GTC
[ENA]
¡û
>W1610012124
AOIB01000015
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
14477
14550
+
Asp
GTC
[ENA]
¡û
>W1610012125
AOIB01000015
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
14568
14641
+
Asp
GTC
[ENA]
¡û
>W1610012600
AOIP01000016
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
154062
154134
+
Asp
GTC
[ENA]
¡û
>W1610012708
AOIS01000011
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
141783
141855
+
Asp
GTC
[ENA]
¡û
>W1610012709
AOIS01000011
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
141869
141941
+
Asp
GTC
[ENA]
¡û
>W1610012710
AOIS01000011
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
142299
142371
+
Asp
GTC
[ENA]
¡û
>W1610012761
AOIT01000010
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
16630
16557
-
Asp
GTC
[ENA]
¡û
>W1610019211
ARQA01000247
Euryarchaeota
Halonotius sp. J07HN6 [ARQA]
10361
10433
+
Asp
GTC
[ENA]
¡û
>W1610046851
BBCV01000023
Euryarchaeota
Natronolimnobius baerhuensis JCM 12253 [BBCV]
40167
40239
+
Asp
GTC
[ENA]
¡û
>W1610046852
BBCV01000023
Euryarchaeota
Natronolimnobius baerhuensis JCM 12253 [BBCV]
43491
43563
+
Asp
GTC
[ENA]
¡û
>W1610682172
LKML01000041
Euryarchaeota
Haloferacaceae archaeon B1-Br10_E2g22 [LKML]
1940
1867
-
Asp
GTC
[ENA]
¡û
>W1610682181
LKML01000105
Euryarchaeota
Haloferacaceae archaeon B1-Br10_E2g22 [LKML]
4575
4502
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK