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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266899 (20 seq.)
>W131055156
ANBG01000252
Actinomycetota
Nocardiopsis gilva YIM 90087 [ANBG]
6820
6893
+
Arg
ACG
[ENA]
¡û
>W1711724844
MTQN01000012
Actinomycetota
Kribbella sp. ALI-6-A [MTQN]
943733
943808
+
Arg
ACG
[ENA]
¡û
>WENV181090658
OEBC01002113
[OEBC] human metagenome; G_DNA_Supragingival plaque
396
470
+
Arg
ACG
[ENA]
¢þ
>WENV181179890
OEJT01025686
[OEJT] human metagenome; G_DNA_Supragingival plaque
1021
1095
+
Arg
ACG
[ENA]
¢þ
>WENV181296104
OFHJ01008305
[OFHJ] soil metagenome; Clay
924
849
-
Arg
ACG
[ENA]
¢þ
>WENV181406744
OGCG01001173
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
13074
13147
+
Arg
ACG
[ENA]
¢þ
>WENV170648188
JRHI01000023
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
72838
72911
+
Arg
ACG
[ENA]
¢þ
>WENV170685456
LFRM01092226
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1175
1250
+
Arg
ACG
[ENA]
¢þ
>WENV170955517
MJUJ01081885
[MJUJ] soil metagenome; viral particles from soil sample CN
36
111
+
Arg
ACG
[ENA]
¢þ
>C181072190
CP022753
Actinomycetota
Nocardiopsis gilva YIM 90087 [CP022753]
245528
245601
+
Arg
ACG
-
¡û
>C191151538
CP036455
Actinomycetota
Streptomonospora litoralis M2 [CP036455]
5554761
5554834
+
Arg
ACG
-
¡û
>C09100438
CP001631
Actinomycetota
Acidimicrobium ferrooxidans DSM 10331 [CP001631]
2136289
2136364
+
Arg
ACG
[Ensembl]
¡û
>W1911687680
QKYK01000004
Actinomycetota
Desertimonas flava SYSU D60003 [QKYK]
71483
71408
-
Arg
ACG
[ENA]
¡û
>W1911722748
QRDE01000004
Actinomycetota
Ilumatobacter sp. SYSU D60003 [QRDE]
71483
71408
-
Arg
ACG
[ENA]
¡û
>W1810367974
PVZC01000005
Actinomycetota
Allonocardiopsis opalescens DSM 45601 [PVZC]
571808
571733
-
Arg
ACG
[ENA]
¡û
>W1510061404
CCYJ01000018
Actinomycetota
Tessaracoccus massiliensis SIT6 [CCYJ]
296773
296700
-
Arg
ACG
[ENA]
¡û
>C10107992
CP001736
Actinomycetota
Kribbella flavida DSM 17836 [CP001736]
291183
291108
-
Arg
ACG
[Ensembl]
¡û
>C10112140
CP001778
Actinomycetota
Stackebrandtia nassauensis DSM 44728 [CP001778]
378089
378162
+
Arg
ACG
[Ensembl]
¡û
>W1511352760
JROO01000030
Actinomycetota
Streptomonospora alba YIM 90003 [JROO]
65597
65522
-
Arg
ACG
[ENA]
¡û
>W1511568499
LAJC01000008
Actinomycetota
Allosalinactinospora lopnorensis CA15-2 [LAJC]
50202
50277
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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