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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274039 (94 seq.)
>W1710912879
LNRZ01000004
Alphaproteobacteria
Sphingopyxis sp. H050 [LNRZ]
340431
340355
-
Met
CAT
[ENA]
¡û
>W1710912923
LNSA01000005
Alphaproteobacteria
Sphingopyxis sp. H115 [LNSA]
129693
129769
+
Met
CAT
[ENA]
¡û
>W1710912962
LNSB01000013
Alphaproteobacteria
Sphingopyxis sp. HIX [LNSB]
56659
56583
-
Met
CAT
[ENA]
¡û
>W1710912995
LNSC01000001
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
107113
107037
-
Met
CAT
[ENA]
¡û
>W1710913050
LNSD01000003
Alphaproteobacteria
Sphingopyxis sp. H057 [LNSD]
254814
254738
-
Met
CAT
[ENA]
¡û
>W1710913105
LNSE01000005
Alphaproteobacteria
Sphingopyxis sp. H067 [LNSE]
254814
254738
-
Met
CAT
[ENA]
¡û
>W1710913148
LNSF01000004
Alphaproteobacteria
Sphingopyxis sp. H071 [LNSF]
254814
254738
-
Met
CAT
[ENA]
¡û
>W1710913193
LNSG01000004
Alphaproteobacteria
Sphingopyxis sp. H073 [LNSG]
254815
254739
-
Met
CAT
[ENA]
¡û
>W1710913231
LNSH01000004
Alphaproteobacteria
Sphingopyxis sp. H081 [LNSH]
254815
254739
-
Met
CAT
[ENA]
¡û
>W1710913280
LNSI01000004
Alphaproteobacteria
Sphingopyxis sp. H100 [LNSI]
254814
254738
-
Met
CAT
[ENA]
¡û
>W1710913317
LNSJ01000002
Alphaproteobacteria
Sphingopyxis sp. H107 [LNSJ]
254814
254738
-
Met
CAT
[ENA]
¡û
>W1710913380
LNSK01000003
Alphaproteobacteria
Sphingopyxis sp. A083 [LNSK]
108517
108593
+
Met
CAT
[ENA]
¡û
>W1711072915
LSIA01000285
Alphaproteobacteria
Novosphingobium sp. CCH12-A3 [LSIA]
25012
24936
-
Met
CAT
[ENA]
¡û
>W1711127848
LURA01000041
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S22_B5 [LURA]
22137
22061
-
Met
CAT
[ENA]
¡û
>W1711127888
LURB01000025
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S23_B6 [LURB]
12335
12259
-
Met
CAT
[ENA]
¡û
>W1711127945
LURE01000010
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S29_B3 [LURE]
146602
146526
-
Met
CAT
[ENA]
¡û
>W1711127981
LURF01000263
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S34_B10 [LURF]
941
865
-
Met
CAT
[ENA]
¡û
>W1711128012
LURH01000001
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S40_B6 [LURH]
73860
73784
-
Met
CAT
[ENA]
¡û
>W1711128052
LURI01000004
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S42_B3 [LURI]
381255
381331
+
Met
CAT
[ENA]
¡û
>W1711387008
MEGC01000023
Alphaproteobacteria
Novosphingobium sp. SCN 63-17 [MEGC]
38810
38734
-
Met
CAT
[ENA]
¡û
>W1711505669
MKVS01000053
Alphaproteobacteria
Novosphingobium sp. 63-713 [MKVS]
42112
42036
-
Met
CAT
[ENA]
¡û
>W131100405
AOUN01000002
Alphaproteobacteria
Sphingopyxis sp. MC1 [AOUN]
162703
162627
-
Met
CAT
[ENA]
¡û
>C014719
CP000248
Alphaproteobacteria
Novosphingobium aromaticivorans DSM 12444 [CP000248]
1702567
1702491
-
Met
CAT
[Ensembl]
¡û
>C019759
CP000356
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [CP000356]
456208
456132
-
Met
CAT
[Ensembl]
¡û
>C171094577
CP019449
Alphaproteobacteria
Sphingopyxis sp. QXT-31 [CP019449]
2086780
2086704
-
Met
CAT
-
¡û
>C171128430
LT598653
Alphaproteobacteria
uncultured Sphingopyxis sp. [LT598653]
2594778
2594702
-
Met
CAT
-
¡û
>WENV180399051
OBQE01030653
[OBQE] marine metagenome; ENVO.00002150
308
384
+
Met
CAT
[ENA]
¢þ
>WENV181166886
OEIU01003807
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
4068
3992
-
Met
CAT
[ENA]
¢þ
>WENV181222897
OFDC01000552
[OFDC] hot springs metagenome; Water
8586
8510
-
Met
CAT
[ENA]
¢þ
>WENV181227225
OFDN01003575
[OFDN] hot springs metagenome; Water
782
706
-
Met
CAT
[ENA]
¢þ
>WENV181308253
OFIS01001622
[OFIS] sludge metagenome; sludge
1361
1285
-
Met
CAT
[ENA]
¢þ
>WENV181311748
OFJB01010750
[OFJB] sludge metagenome; sludge
1853
1929
+
Met
CAT
[ENA]
¢þ
>WENV181402310
OFTY01000523
[OFTY] sludge metagenome; sludge
14812
14736
-
Met
CAT
[ENA]
¢þ
>WENV170010998
APMI01038524
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
730
806
+
Met
CAT
[ENA]
¢þ
>WENV170143850
CENY01101954
[CENY] marine metagenome genome assembly TARA_032_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1705
1629
-
Met
CAT
[ENA]
¢þ
>WENV170727393
LULE01000020
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
27639
27715
+
Met
CAT
[ENA]
¢þ
>WENV170728778
LULF01000630
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
1285
1209
-
Met
CAT
[ENA]
¢þ
>WENV170730118
LULG01014489
[LULG] marine metagenome; Red Sea water column Station 169 - depth 200m
1198
1122
-
Met
CAT
[ENA]
¢þ
>WENV170732256
LULI01027084
[LULI] marine metagenome; Red Sea water column Station 169 - depth 50m
556
480
-
Met
CAT
[ENA]
¢þ
>WENV170732582
LULJ01000159
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
2703
2627
-
Met
CAT
[ENA]
¢þ
>WENV170734341
LULK01004046
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
941
865
-
Met
CAT
[ENA]
¢þ
>WENV170736368
LULM01001723
[LULM] marine metagenome; Red Sea water column Station 149 - depth 200m
164
88
-
Met
CAT
[ENA]
¢þ
>WENV170737501
LULO01000347
[LULO] marine metagenome; Red Sea water column Station 149 - depth 50m
8511
8587
+
Met
CAT
[ENA]
¢þ
>WENV170738351
LULP01000021
[LULP] marine metagenome; Red Sea water column Station 149 - depth 25m
146602
146526
-
Met
CAT
[ENA]
¢þ
>WENV170739417
LULQ01001029
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
2285
2209
-
Met
CAT
[ENA]
¢þ
>WENV170740652
LULR01025548
[LULR] marine metagenome; Red Sea water column Station 108 - depth 500m
387
311
-
Met
CAT
[ENA]
¢þ
>WENV170741264
LULS01017388
[LULS] marine metagenome; Red Sea water column Station 108 - depth 200m
501
425
-
Met
CAT
[ENA]
¢þ
>WENV170742677
LULV01000121
[LULV] marine metagenome; Red Sea water column Station 108 - depth 25m
12335
12259
-
Met
CAT
[ENA]
¢þ
>WENV170743490
LULW01000222
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
22137
22061
-
Met
CAT
[ENA]
¢þ
>WENV170759070
LUMS01001892
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
3185
3261
+
Met
CAT
[ENA]
¢þ
>WENV170759503
LUMT01000002
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
381255
381331
+
Met
CAT
[ENA]
¢þ
>WENV170761394
LUMV01000187
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
34284
34360
+
Met
CAT
[ENA]
¢þ
>WENV170762673
LUMW01023635
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
213
137
-
Met
CAT
[ENA]
¢þ
>C191000597
AP017898
Alphaproteobacteria
Sphingopyxis sp. FD7 [AP017898]
425919
425843
-
Met
CAT
-
¡û
>C191057040
CP028347
Alphaproteobacteria
Novosphingobium sp. THN1 [CP028347]
2187780
2187856
+
Met
CAT
-
¡û
>C191163812
CP039250
Alphaproteobacteria
Sphingopyxis sp. PAMC25046 [CP039250]
3531155
3531079
-
Met
CAT
-
¡û
>W09100306
AAAV03000002
Alphaproteobacteria
Novosphingobium aromaticivorans DSM 12444 [AAAV]
346069
346145
+
Met
CAT
[ENA]
¡û
>W09102956
AAIP01000008
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [AAIP]
13731
13655
-
Met
CAT
[ENA]
¡û
>W1910501766
FYAT01000012
Alphaproteobacteria
Sphingopyxis sp. P1IMeth2 [FYAT]
750817
750741
-
Met
CAT
[ENA]
¡û
>W1911411570
NWUR01000011
Alphaproteobacteria
Sphingopyxis terrae DSM 24316 [NWUR]
268431
268507
+
Met
CAT
[ENA]
¡û
>W1810107968
PHFW01000002
Alphaproteobacteria
Sphingopyxis lindanitolerans WS5A3p [PHFW]
578120
578044
-
Met
CAT
[ENA]
¡û
>W1810121210
PHUF01000002
Alphaproteobacteria
Novosphingobium kunmingense CGMCC 1.12274 [PHUF]
831975
831899
-
Met
CAT
[ENA]
¡û
>W1810597611
QGHL01000007
Alphaproteobacteria
Novosphingobium meiothermophilum SYSU G00007 [QGHL]
928367
928443
+
Met
CAT
[ENA]
¡û
>W1511221161
JNFC01000017
Alphaproteobacteria
Sphingopyxis sp. LC363 [JNFC]
62172
62096
-
Met
CAT
[ENA]
¡û
>W1511357017
JRVC01000011
Alphaproteobacteria
Novosphingobium subterraneum DSM 12447 [JRVC]
97746
97822
+
Met
CAT
[ENA]
¡û
>C161055638
CP013342
Alphaproteobacteria
Sphingopyxis terrae subsp. terrae NBRC 15098 203-1 [CP013342]
13765
13689
-
Met
CAT
[Ensembl]
¡û
>W1610077055
BCZF01000036
Alphaproteobacteria
Novosphingobium subterraneum NBRC 16086 [BCZF]
313
237
-
Met
CAT
[ENA]
¡û
>W1610077680
BCZQ01000014
Alphaproteobacteria
Sphingopyxis terrae NBRC 15098 [BCZQ]
167485
167561
+
Met
CAT
[ENA]
¡û
>W1610771238
LNRZ01000004
Alphaproteobacteria
Sphingopyxis sp. H050 [LNRZ]
340431
340355
-
Met
CAT
[ENA]
¡û
>W1610771282
LNSA01000005
Alphaproteobacteria
Sphingopyxis sp. H115 [LNSA]
129693
129769
+
Met
CAT
[ENA]
¡û
>W1610771321
LNSB01000013
Alphaproteobacteria
Sphingopyxis sp. HIX [LNSB]
56659
56583
-
Met
CAT
[ENA]
¡û
>W1610771354
LNSC01000001
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
107113
107037
-
Met
CAT
[ENA]
¡û
>W1610771409
LNSD01000003
Alphaproteobacteria
Sphingopyxis sp. H057 [LNSD]
254814
254738
-
Met
CAT
[ENA]
¡û
>W1610771464
LNSE01000005
Alphaproteobacteria
Sphingopyxis sp. H067 [LNSE]
254814
254738
-
Met
CAT
[ENA]
¡û
>W1610771507
LNSF01000004
Alphaproteobacteria
Sphingopyxis sp. H071 [LNSF]
254814
254738
-
Met
CAT
[ENA]
¡û
>W1610771552
LNSG01000004
Alphaproteobacteria
Sphingopyxis sp. H073 [LNSG]
254815
254739
-
Met
CAT
[ENA]
¡û
>W1610771590
LNSH01000004
Alphaproteobacteria
Sphingopyxis sp. H081 [LNSH]
254815
254739
-
Met
CAT
[ENA]
¡û
>W1610771639
LNSI01000004
Alphaproteobacteria
Sphingopyxis sp. H100 [LNSI]
254814
254738
-
Met
CAT
[ENA]
¡û
>W1610771676
LNSJ01000002
Alphaproteobacteria
Sphingopyxis sp. H107 [LNSJ]
254814
254738
-
Met
CAT
[ENA]
¡û
>W1610771739
LNSK01000003
Alphaproteobacteria
Sphingopyxis sp. A083 [LNSK]
108517
108593
+
Met
CAT
[ENA]
¡û
>W1610912175
LSIA01000285
Alphaproteobacteria
Novosphingobium sp. CCH12-A3 [LSIA]
25012
24936
-
Met
CAT
[ENA]
¡û
>W1610938962
LURA01000041
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S22_B5 [LURA]
22137
22061
-
Met
CAT
[ENA]
¡û
>W1610939002
LURB01000025
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S23_B6 [LURB]
12335
12259
-
Met
CAT
[ENA]
¡û
>W1610939059
LURE01000010
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S29_B3 [LURE]
146602
146526
-
Met
CAT
[ENA]
¡û
>W1610939095
LURF01000263
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S34_B10 [LURF]
941
865
-
Met
CAT
[ENA]
¡û
>W1610939126
LURH01000001
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S40_B6 [LURH]
73860
73784
-
Met
CAT
[ENA]
¡û
>W1610939166
LURI01000004
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S42_B3 [LURI]
381255
381331
+
Met
CAT
[ENA]
¡û
>WENV079934
AATN01009643
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
373
297
-
Met
CAT
[ENA]
>W1710074744
BCZF01000036
Alphaproteobacteria
Novosphingobium subterraneum NBRC 16086 [BCZF]
313
237
-
Met
CAT
[ENA]
¡û
>W1710075318
BCZQ01000014
Alphaproteobacteria
Sphingopyxis terrae NBRC 15098 [BCZQ]
167485
167561
+
Met
CAT
[ENA]
¡û
>W1710507987
FMVR01000004
Alphaproteobacteria
Novosphingobium aromaticivorans stygium [FMVR]
345965
346041
+
Met
CAT
[ENA]
¡û
>W1710540062
FNWK01000004
Alphaproteobacteria
Sphingopyxis sp. YR583 [FNWK]
227645
227721
+
Met
CAT
[ENA]
¡û
>W1710605973
FWXL01000003
Alphaproteobacteria
Novosphingobium sp. B1 [FWXL]
37745
37821
+
Met
CAT
[ENA]
¡û
>W1710609446
FXWL01000002
Alphaproteobacteria
Sphingopyxis terrae ummariensis [FXWL]
157503
157427
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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