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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274635 (30 seq.)
>A171002049
CP002551
Euryarchaeota
Methanobacterium lacus AL-21 [CP002551]
299932
299857
-
Met
CAT
-
¡û
>A171002247
CP002772
Euryarchaeota
Methanobacterium paludis SWAN1 [CP002772]
2209627
2209702
+
Met
CAT
-
¡û
>A171004017
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
339444
339371
-
Met
CAT
-
¡û
>A171007313
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
1716015
1716088
+
Met
CAT
-
¡û
>A171007343
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
964784
964857
+
Met
CAT
-
¡û
>A171007395
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
2096552
2096625
+
Met
CAT
-
¡û
>A171007663
LT607756
Euryarchaeota
Methanobacterium congolense [LT607756]
2131056
2131131
+
Met
CAT
-
¡û
>WENV180246466
OBDP01000160
[OBDP] human gut metagenome; human gut
10542
10467
-
Ile2
CAT
[ENA]
¢þ
>WENV180545347
OCIT01002201
[OCIT] human gut metagenome; human gut
214
289
+
Ile2
CAT
[ENA]
¢þ
>WENV180661006
OCVV010980698
[OCVV] gut metagenome; gut
4390
4465
+
Ile2
CAT
[ENA]
¢þ
>WENV180661011
OCVV010980698
[OCVV] gut metagenome; gut
4390
4465
+
Ile2
CAT
[ENA]
¢þ
>WENV181230056
OFEK01000230
[OFEK] activated sludge metagenome; Anaerobic digester
75427
75500
+
Ile2
CAT
[ENA]
¢þ
>WENV181230059
OFEK01000232
[OFEK] activated sludge metagenome; Anaerobic digester
73265
73191
-
Ile2
CAT
[ENA]
¢þ
>WENV183296270
OLSL01025127
[OLSL] human gut metagenome; faeces
103
28
-
Ile2
CAT
[ENA]
¢þ
>WENV183507783
OMGY01069977
[OMGY] human gut metagenome; human gut
20
95
+
Ile2
CAT
[ENA]
¢þ
>WENV170670006
LAHS01015037
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
294
218
-
Met
CAT
[ENA]
¢þ
>WENV170671061
LAHU01010551
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
3935
3861
-
Met
CAT
[ENA]
¢þ
>WENV170677319
LDZT01004936
[LDZT] terrestrial metagenome; oil reservoir sample SB1
4416
4489
+
Met
CAT
[ENA]
¢þ
>At1558
CP000102
Euryarchaeota
Methanosphaera stadtmanae DSM 3091 [CP000102]
337051
337124
+
Met
CAT
[Ensembl]
¡û
>WENV170972556
MTKX01034777
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
635
562
-
Met
CAT
[ENA]
¢þ
>WENV170976347
MTKZ01006900
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2218
2291
+
Met
CAT
[ENA]
¢þ
>W1910576023
JRWK01000005
Euryarchaeota
Methanosphaera sp. WGK6 [JRWK]
64265
64190
-
Met
CAT
[ENA]
¡û
>W1910635129
LMVM01000012
Euryarchaeota
Methanobacterium bryantii M.o.H. [LMVM]
448262
448336
+
Met
CAT
[ENA]
¡û
>W1910655466
LZPM01000042
Euryarchaeota
Methanobacterium sp. A39 [LZPM]
19538
19612
+
Met
CAT
[ENA]
¡û
>W1910656114
MAIF01000012
Euryarchaeota
Methanosphaera sp. A6 [MAIF]
6869
6794
-
Met
CAT
[ENA]
¡û
>W1910899140
NGJK01000015
Euryarchaeota
Methanosphaera stadtmanae PA5 [NGJK]
45576
45651
+
Met
CAT
[ENA]
¡û
>W1610006213
AMGN01000001
Euryarchaeota
Methanobacterium sp. Maddingley MBC34 [AMGN]
13844
13771
-
Met
CAT
[ENA]
¡û
>W1610011021
AMPO01000008
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
50264
50191
-
Met
CAT
[ENA]
¡û
>W1610049151
BBES01000007
Euryarchaeota
Methanobacterium formicicum JCM 10132 [BBES]
95862
95935
+
Met
CAT
[ENA]
¡û
>W1610613873
LGGL01000043
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
4416
4489
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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