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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.275211 (84 seq.)
>W1710900538
LNKA01000001
Gammaproteobacteria
Legionella adelaidensis [LNKA]
13775
13699
-
Met
CAT
[ENA]
¡û
>W1710919670
LNXV01000033
Gammaproteobacteria
Legionella brunensis [LNXV]
218057
218133
+
Met
CAT
[ENA]
¡û
>W1710919742
LNXX01000009
Gammaproteobacteria
Legionella cincinnatiensis [LNXX]
33202
33126
-
Met
CAT
[ENA]
¡û
>W1710919867
LNYA01000023
Gammaproteobacteria
Legionella erythra [LNYA]
411423
411499
+
Met
CAT
[ENA]
¡û
>W1710919901
LNYB01000032
Gammaproteobacteria
Legionella feeleii [LNYB]
2123
2047
-
Met
CAT
[ENA]
¡û
>W1710919944
LNYC01000007
Gammaproteobacteria
Legionella geestiana [LNYC]
48173
48097
-
Met
CAT
[ENA]
¡û
>W1710920087
LNYF01000020
Gammaproteobacteria
Legionella hackeliae [LNYF]
645493
645417
-
Met
CAT
[ENA]
¡û
>W1710920123
LNYG01000013
Gammaproteobacteria
Legionella jamestowniensis [LNYG]
1952011
1951935
-
Met
CAT
[ENA]
¡û
>W1710920222
LNYJ01000011
Gammaproteobacteria
Legionella jordanis [LNYJ]
1512923
1512999
+
Met
CAT
[ENA]
¡û
>W1710920336
LNYL01000051
Gammaproteobacteria
Legionella maceachernii [LNYL]
47498
47422
-
Met
CAT
[ENA]
¡û
>W1710920339
LNYM01000004
Gammaproteobacteria
Legionella micdadei [LNYM]
118372
118448
+
Met
CAT
[ENA]
¡û
>W1710920453
LNYP01000005
Gammaproteobacteria
Legionella oakridgensis [LNYP]
317
241
-
Met
CAT
[ENA]
¡û
>W1710920635
LNYT01000007
Gammaproteobacteria
Legionella rubrilucens [LNYT]
98283
98207
-
Met
CAT
[ENA]
¡û
>W1710920985
LNZC01000009
Gammaproteobacteria
Legionella worsleiensis [LNZC]
110813
110889
+
Met
CAT
[ENA]
¡û
>W1711124945
LUKY01000030
Gammaproteobacteria
Candidatus Rickettsiella isopodorum [LUKY]
14721
14797
+
Met
CAT
[ENA]
¡û
>W1711252417
LYOZ01000052
Gammaproteobacteria
Legionella jamestowniensis [LYOZ]
386223
386299
+
Met
CAT
[ENA]
¡û
>W1711350237
MCRF01000097
Gammaproteobacteria
Rickettsiella grylli [MCRF]
198
122
-
Met
CAT
[ENA]
¡û
>w016666
AAQJ01000001
Gammaproteobacteria
Rickettsiella grylli [AAQJ]
582402
582329
-
Met
CAT
[ENA]
¡û
>C171110825
CP020614
Gammaproteobacteria
Legionella micdadei NZ2015 [CP020614]
2590037
2590113
+
Met
CAT
-
¡û
>C171110865
CP020615
Gammaproteobacteria
Legionella micdadei NZ2016 [CP020615]
2629069
2629145
+
Met
CAT
-
¡û
>W141220976
AZYK01000030
Gammaproteobacteria
Legionella oakridgensis RV-2-2007 [AZYK]
125
49
-
Met
CAT
[ENA]
¡û
>W141245621
CALJ01000326
Gammaproteobacteria
Legionella tunisiensis LegM [CALJ]
9503
9579
+
Met
CAT
[ENA]
¡û
>WENV170160755
CEOK01173987
[CEOK] marine metagenome genome assembly TARA_030_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
342
418
+
Met
CAT
[ENA]
¢þ
>WENV170858469
MDTB01023127
[MDTB] marine metagenome; seawater
2461
2385
-
Met
CAT
[ENA]
¢þ
>C181019718
CP016397
Gammaproteobacteria
Legionella clemsonensis CDC-D5610 [CP016397]
2742414
2742490
+
Met
CAT
-
¡û
>C191000861
AP018005
Gammaproteobacteria
Candidatus Rickettsiella viridis Ap-RA04 [AP018005]
388074
387998
-
Met
CAT
-
¡û
>C191159081
CP038271
Gammaproteobacteria
Legionella geestiana 1308 [CP038271]
2018056
2017980
-
Met
CAT
-
¡û
>C191209851
LR134383
Gammaproteobacteria
Legionella jordanis NCTC11533 [LR134383]
444838
444762
-
Met
CAT
-
¡û
>W141561040
JHYC01000018
Gammaproteobacteria
Legionella fairfieldensis ATCC 49588 [JHYC]
36632
36708
+
Met
CAT
[ENA]
¡û
>W141561553
JHYN01000022
Gammaproteobacteria
Legionella geestiana DSM 21217 [JHYN]
48202
48126
-
Met
CAT
[ENA]
¡û
>W141730037
JNIA01000022
Gammaproteobacteria
Legionella wadsworthii DSM 21896 = ATCC 33877 [JNIA]
30117
30193
+
Met
CAT
[ENA]
¡û
>W09134572
ACUL01000158
Gammaproteobacteria
Legionella drancourtii LLAP12 [ACUL]
110
34
-
Met
CAT
[ENA]
¡û
>C141003245
CP004006
Gammaproteobacteria
Legionella oakridgensis ATCC 33761 = DSM 21215 [CP004006]
689398
689322
-
Met
CAT
[Ensembl]
¡û
>W1910728548
MGXN01000115
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_01_FULL_42_8 [MGXN]
19559
19633
+
Met
CAT
[ENA]
¡û
>W1910728666
MGXR01000007
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_42_43 [MGXR]
5639
5565
-
Met
CAT
[ENA]
¡û
>W1910729009
MGYB01000014
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_41_15 [MGYB]
504
428
-
Met
CAT
[ENA]
¡û
>W1910729090
MGYD01000010
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_41_25 [MGYD]
4774
4700
-
Met
CAT
[ENA]
¡û
>W1910729406
MGYN01000007
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_42_14 [MGYN]
24431
24505
+
Met
CAT
[ENA]
¡û
>W1910729698
MGYW01000003
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPLOWO2_12_FULL_42_18 [MGYW]
5631
5557
-
Met
CAT
[ENA]
¡û
>W1910729987
MHBD01000033
Gammaproteobacteria
Legionellales bacterium RIFCSPHIGHO2_12_FULL_42_9 [MHBD]
2658
2582
-
Met
CAT
[ENA]
¡û
>W1911662114
QFGD01000006
Gammaproteobacteria
Legionella taurinensis WH05 [QFGD]
80761
80685
-
Met
CAT
[ENA]
¡û
>W1911662153
QFGE01000005
Gammaproteobacteria
Legionella taurinensis WH04 [QFGE]
107906
107982
+
Met
CAT
[ENA]
¡û
>W1911662237
QFGG01000006
Gammaproteobacteria
Legionella taurinensis WH02 [QFGG]
80761
80685
-
Met
CAT
[ENA]
¡û
>W1911662266
QFGH01000005
Gammaproteobacteria
Legionella taurinensis WH01 [QFGH]
107906
107982
+
Met
CAT
[ENA]
¡û
>W1911662316
QFGI01000004
Gammaproteobacteria
Legionella taurinensis WC04 [QFGI]
80761
80685
-
Met
CAT
[ENA]
¡û
>W1911662347
QFGJ01000004
Gammaproteobacteria
Legionella taurinensis WC03 [QFGJ]
80760
80684
-
Met
CAT
[ENA]
¡û
>W1911662400
QFGK01000005
Gammaproteobacteria
Legionella taurinensis WC02 [QFGK]
80949
80873
-
Met
CAT
[ENA]
¡û
>W1911662439
QFGL01000004
Gammaproteobacteria
Legionella taurinensis WC01 [QFGL]
80939
80863
-
Met
CAT
[ENA]
¡û
>W1911824213
QZWB01000001
Gammaproteobacteria
Legionella taurinensis 4570-18-6 [QZWB]
491
415
-
Met
CAT
[ENA]
¡û
>W1911824266
QZWC01000007
Gammaproteobacteria
Legionella taurinensis 4567-18-4 [QZWC]
316
240
-
Met
CAT
[ENA]
¡û
>W1810531352
QCXK01000005
Gammaproteobacteria
Legionella taurinensis Genessee01 [QCXK]
107906
107982
+
Met
CAT
[ENA]
¡û
>W1810531405
QCXL01000006
Gammaproteobacteria
Legionella taurinensis Genessee02 [QCXL]
80761
80685
-
Met
CAT
[ENA]
¡û
>W1810531445
QCXM01000005
Gammaproteobacteria
Legionella taurinensis Genessee03 [QCXM]
80949
80873
-
Met
CAT
[ENA]
¡û
>W1810531484
QCXN01000004
Gammaproteobacteria
Legionella taurinensis Genessee04 [QCXN]
80761
80685
-
Met
CAT
[ENA]
¡û
>C151103463
LN614830
Gammaproteobacteria
Legionella micdadei ATCC 33218 [LN614830]
786948
786872
-
Met
CAT
[Ensembl]
¡û
>C151103888
LN681225
Gammaproteobacteria
Legionella hackeliae ATCC 35250 [LN681225]
531329
531253
-
Met
CAT
[Ensembl]
¡û
>W1610122381
CZVG01000009
Gammaproteobacteria
Legionella saoudiensis LH-SWC [CZVG]
160861
160785
-
Met
CAT
[ENA]
¡û
>W1610580141
LBAX01000009
Gammaproteobacteria
Legionella jordanis [LBAX]
48938
48862
-
Met
CAT
[ENA]
¡û
>W1610583902
LBHK01000031
Gammaproteobacteria
Legionella feeleii [LBHK]
49654
49730
+
Met
CAT
[ENA]
¡û
>W1610584596
LCUA01000016
Gammaproteobacteria
Legionella oakridgensis [LCUA]
286
210
-
Met
CAT
[ENA]
¡û
>W1610584623
LCUB01000001
Gammaproteobacteria
Legionella micdadei [LCUB]
471223
471299
+
Met
CAT
[ENA]
¡û
>W1610760525
LNKA01000001
Gammaproteobacteria
Legionella adelaidensis [LNKA]
13775
13699
-
Met
CAT
[ENA]
¡û
>W1610777568
LNXV01000033
Gammaproteobacteria
Legionella brunensis [LNXV]
218057
218133
+
Met
CAT
[ENA]
¡û
>W1610777640
LNXX01000009
Gammaproteobacteria
Legionella cincinnatiensis [LNXX]
33202
33126
-
Met
CAT
[ENA]
¡û
>W1610777765
LNYA01000023
Gammaproteobacteria
Legionella erythra [LNYA]
411423
411499
+
Met
CAT
[ENA]
¡û
>W1610777799
LNYB01000032
Gammaproteobacteria
Legionella feeleii [LNYB]
2123
2047
-
Met
CAT
[ENA]
¡û
>W1610777842
LNYC01000007
Gammaproteobacteria
Legionella geestiana [LNYC]
48173
48097
-
Met
CAT
[ENA]
¡û
>W1610777985
LNYF01000020
Gammaproteobacteria
Legionella hackeliae [LNYF]
645493
645417
-
Met
CAT
[ENA]
¡û
>W1610778021
LNYG01000013
Gammaproteobacteria
Legionella jamestowniensis [LNYG]
1952011
1951935
-
Met
CAT
[ENA]
¡û
>W1610778120
LNYJ01000011
Gammaproteobacteria
Legionella jordanis [LNYJ]
1512923
1512999
+
Met
CAT
[ENA]
¡û
>W1610778234
LNYL01000051
Gammaproteobacteria
Legionella maceachernii [LNYL]
47498
47422
-
Met
CAT
[ENA]
¡û
>W1610778237
LNYM01000004
Gammaproteobacteria
Legionella micdadei [LNYM]
118372
118448
+
Met
CAT
[ENA]
¡û
>W1610778351
LNYP01000005
Gammaproteobacteria
Legionella oakridgensis [LNYP]
317
241
-
Met
CAT
[ENA]
¡û
>W1610778533
LNYT01000007
Gammaproteobacteria
Legionella rubrilucens [LNYT]
98283
98207
-
Met
CAT
[ENA]
¡û
>W1610778883
LNZC01000009
Gammaproteobacteria
Legionella worsleiensis [LNZC]
110813
110889
+
Met
CAT
[ENA]
¡û
>W1611017205
LYOZ01000052
Gammaproteobacteria
Legionella jamestowniensis [LYOZ]
386223
386299
+
Met
CAT
[ENA]
¡û
>W1710124048
CZVG01000009
Gammaproteobacteria
Legionella saoudiensis LH-SWC [CZVG]
160861
160785
-
Met
CAT
[ENA]
¡û
>W1710507775
FMVN01000012
Gammaproteobacteria
Legionella micdadei [FMVN]
118485
118561
+
Met
CAT
[ENA]
¡û
>W1710568955
FOTZ01000001
Gammaproteobacteria
Legionella jamestowniensis DSM 19215 [FOTZ]
122180
122104
-
Met
CAT
[ENA]
¡û
>W1710601533
FUXJ01000014
Gammaproteobacteria
Legionella maceachernii [FUXJ]
44568
44492
-
Met
CAT
[ENA]
¡û
>W1710699153
LBAX01000009
Gammaproteobacteria
Legionella jordanis [LBAX]
48938
48862
-
Met
CAT
[ENA]
¡û
>W1710703050
LBHK01000031
Gammaproteobacteria
Legionella feeleii [LBHK]
49654
49730
+
Met
CAT
[ENA]
¡û
>W1710703787
LCUA01000016
Gammaproteobacteria
Legionella oakridgensis [LCUA]
286
210
-
Met
CAT
[ENA]
¡û
>W1710703814
LCUB01000001
Gammaproteobacteria
Legionella micdadei [LCUB]
471223
471299
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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