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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.27773 (27 seq.)
>W1710871521
LMLJ01000001
Gammaproteobacteria
Serratia sp. Leaf51 [LMLJ]
250776
250687
-
Ser
GGA
[ENA]
¡û
>WENV170707920
LNAP01039904
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1535
1624
+
Ser
GGA
[ENA]
¢þ
>C181035741
CP019062
Gammaproteobacteria
Rahnella sikkimica ERMR1:05 [CP019062]
1866135
1866224
+
Ser
GGA
-
¡û
>C191087436
CP032296
Gammaproteobacteria
Rahnella aquatilis ZF7 [CP032296]
1816551
1816462
-
Ser
GGA
-
¡û
>C191126473
CP034481
Gammaproteobacteria
Rahnella aquatilis KM25 [CP034481]
1757755
1757666
-
Ser
GGA
-
¡û
>C191126549
CP034482
Gammaproteobacteria
Rahnella aquatilis KM12 [CP034482]
1758452
1758363
-
Ser
GGA
-
¡û
>C191126626
CP034483
Gammaproteobacteria
Rahnella aquatilis KM05 [CP034483]
1905346
1905257
-
Ser
GGA
-
¡û
>C191151787
CP036490
Gammaproteobacteria
Rahnella aquatilis MEM40 [CP036490]
4516140
4516051
-
Ser
GGA
-
¡û
>W141816146
JQJR01000001
Gammaproteobacteria
Rahnella sp. WP5 [JQJR]
25774
25863
+
Ser
GGA
[ENA]
¡û
>W1910584868
JYDE01000004
Gammaproteobacteria
Rahnella inusitata DSM 30078 [JYDE]
131674
131763
+
Ser
GGA
[ENA]
¡û
>W1910584952
JYDF01000147
Gammaproteobacteria
Rahnella sp. NRRL B-41462 [JYDF]
307
218
-
Ser
GGA
[ENA]
¡û
>W1910584968
JYDG01000027
Gammaproteobacteria
Rahnella sp. AN3-3W3 [JYDG]
40172
40261
+
Ser
GGA
[ENA]
¡û
>W1910655785
MAEN01000001
Gammaproteobacteria
Rahnella victoriana BRK18a [MAEN]
1526944
1527033
+
Ser
GGA
[ENA]
¡û
>W1910696168
MEHU01000001
Gammaproteobacteria
Enterobacteriaceae bacterium Larv1_ips [MEHU]
289081
288992
-
Ser
GGA
[ENA]
¡û
>W1910750397
MJIB01000004
Gammaproteobacteria
Rahnella sp. Larv3_ips [MJIB]
294679
294590
-
Ser
GGA
[ENA]
¡û
>W1911239321
NSDJ01000001
Gammaproteobacteria
Rahnella variigena CIP 105588 [NSDJ]
2652977
2652888
-
Ser
GGA
[ENA]
¡û
>W1911686156
QKVV01000001
Gammaproteobacteria
Rahnella variigena VCR3 [QKVV]
2413610
2413521
-
Ser
GGA
[ENA]
¡û
>W1911693632
QLTF01000005
Gammaproteobacteria
Rahnella sp. NFIX50 [QLTF]
135722
135633
-
Ser
GGA
[ENA]
¡û
>W1911824508
QZWI01000001
Gammaproteobacteria
Rahnella bruchi DSM 27398 [QZWI]
70141
70230
+
Ser
GGA
[ENA]
¡û
>W1810150006
PITQ01000008
Gammaproteobacteria
Rahnella sp. AA [PITQ]
243968
244057
+
Ser
GGA
[ENA]
¡û
>C11118366
CP002505
Gammaproteobacteria
Rahnella aceris Y9602 [CP002505]
1845503
1845414
-
Ser
GGA
[Ensembl]
¡û
>W1511433740
JUHL01000007
Gammaproteobacteria
Rahnella aquatilis OV588 [JUHL]
42832
42921
+
Ser
GGA
[ENA]
¡û
>W1511433811
JUHM01000009
Gammaproteobacteria
Rahnella aquatilis OV744 [JUHM]
179823
179734
-
Ser
GGA
[ENA]
¡û
>C121009658
CP003244
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [CP003244]
1870976
1870887
-
Ser
GGA
[Ensembl]
¡û
>C121012511
CP003403
Gammaproteobacteria
Rahnella aquatilis HX2 [CP003403]
1796735
1796646
-
Ser
GGA
[Ensembl]
¡û
>C121012512
CP003403
Gammaproteobacteria
Rahnella aquatilis HX2 [CP003403]
1796450
1796361
-
Ser
GGA
[Ensembl]
¡û
>W1610733867
LMLJ01000001
Gammaproteobacteria
Serratia sp. Leaf51 [LMLJ]
250776
250687
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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