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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277826 (45 seq.)
>W1711065140
LSBN01000298
Bacillota
Halanaerobium sp. T82-1 [LSBN]
463
388
-
Glu
TTC
[ENA]
¡û
>W1711431475
MIJU01000067
Bacillota
Halanaerobium sp. MDAL1 [MIJU]
28132
28057
-
Glu
TTC
[ENA]
¡û
>W131250053
CAUI01000023
Bacillota
Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643 [CAUI]
582322
582397
+
Glu
TTC
[ENA]
¡û
>w015328
AAOZ01000063
Bacillota
Halothermothrix orenii H 168 [AAOZ]
3957
4034
+
Glu
TTC
[ENA]
¡û
>w015325
AAOZ01000035
Bacillota
Halothermothrix orenii H 168 [AAOZ]
12437
12360
-
Glu
TTC
[ENA]
¡û
>w015311
AAOZ01000021
Bacillota
Halothermothrix orenii H 168 [AAOZ]
33658
33586
-
Glu
TTC
[ENA]
¡û
>WENV170686366
LFRM01140643
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
584
659
+
Glu
TTC
[ENA]
¢þ
>WENV170691538
LFRM01402081
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
45915
45840
-
Glu
TTC
[ENA]
¢þ
>WENV170719981
LSQX01136336
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
45932
45857
-
Glu
TTC
[ENA]
¢þ
>C191094419
CP032760
Bacillota
Halocella sp. SP3-1 [CP032760]
1277165
1277240
+
Glu
CTC
-
¡û
>C191094438
CP032760
Bacillota
Halocella sp. SP3-1 [CP032760]
2758378
2758453
+
Glu
TTC
-
¡û
>C191094460
CP032760
Bacillota
Halocella sp. SP3-1 [CP032760]
100027
99952
-
Glu
TTC
-
¡û
>C09106577
CP001098
Bacillota
Halothermothrix orenii H 168 H 168; DSM 9562 [CP001098]
25364
25439
+
Glu
TTC
[Ensembl]
¡û
>C09106615
CP001098
Bacillota
Halothermothrix orenii H 168 H 168; DSM 9562 [CP001098]
1646378
1646303
-
Glu
TTC
[Ensembl]
¡û
>C09106621
CP001098
Bacillota
Halothermothrix orenii H 168 H 168; DSM 9562 [CP001098]
950639
950564
-
Glu
TTC
[Ensembl]
¡û
>W1810486192
QAXS01000003
Bacillota
Halanaerobium saccharolyticum WC1 [QAXS]
100607
100682
+
Glu
TTC
[ENA]
¡û
>W1810486198
QAXS01000004
Bacillota
Halanaerobium saccharolyticum WC1 [QAXS]
57172
57097
-
Glu
TTC
[ENA]
¡û
>W1810503764
QBKJ01000001
Bacillota
Halanaerobium congolense WG5_pb [QBKJ]
979566
979491
-
Glu
TTC
[ENA]
¡û
>W1810628421
QICM01000003
Bacillota
Halanaerobium congolense MSL28 [QICM]
79948
79873
-
Glu
TTC
[ENA]
¡û
>W1810628428
QICM01000013
Bacillota
Halanaerobium congolense MSL28 [QICM]
66647
66572
-
Glu
TTC
[ENA]
¡û
>W1810759105
QPJE01000001
Bacillota
Halanaerobium sp. MA284_MarDTE_T2 [QPJE]
188676
188751
+
Glu
TTC
[ENA]
¡û
>W1810759125
QPJE01000018
Bacillota
Halanaerobium sp. MA284_MarDTE_T2 [QPJE]
1723
1798
+
Glu
TTC
[ENA]
¡û
>W1810759139
QPJE01000038
Bacillota
Halanaerobium sp. MA284_MarDTE_T2 [QPJE]
15291
15216
-
Glu
TTC
[ENA]
¡û
>W1810759148
QPJF01000001
Bacillota
Halanaerobium sp. ST460_2HS_T2 [QPJF]
29557
29632
+
Glu
TTC
[ENA]
¡û
>W1810759171
QPJF01000016
Bacillota
Halanaerobium sp. ST460_2HS_T2 [QPJF]
29007
29082
+
Glu
TTC
[ENA]
¡û
>W1810759553
QPJN01000001
Bacillota
Halanaerobium sp. DL-01 [QPJN]
134730
134805
+
Glu
TTC
[ENA]
¡û
>W1810759573
QPJN01000017
Bacillota
Halanaerobium sp. DL-01 [QPJN]
1723
1798
+
Glu
TTC
[ENA]
¡û
>W1610605202
LFRS01000058
Bacillota
Halothermothrix sp. DTU029 [LFRS]
584
659
+
Glu
TTC
[ENA]
¡û
>W1610605237
LFRS01000183
Bacillota
Halothermothrix sp. DTU029 [LFRS]
45915
45840
-
Glu
TTC
[ENA]
¡û
>W1610905929
LSBN01000298
Bacillota
Halanaerobium sp. T82-1 [LSBN]
463
388
-
Glu
TTC
[ENA]
¡û
>W1710511599
FMYT01000052
Bacillota
Halanaerobium congolense [FMYT]
1909
1834
-
Glu
TTC
[ENA]
¡û
>W1710515009
FNBJ01000062
Bacillota
Halanaerobium congolense [FNBJ]
1585
1660
+
Glu
TTC
[ENA]
¡û
>W1710517319
FNDF01000015
Bacillota
Halanaerobium congolense [FNDF]
1609
1684
+
Glu
TTC
[ENA]
¡û
>W1710521024
FNGB01000003
Bacillota
Halanaerobium congolense [FNGB]
168576
168501
-
Glu
TTC
[ENA]
¡û
>W1710521672
FNGO01000016
Bacillota
Halarsenatibacter silvermanii [FNGO]
21361
21286
-
Glu
TTC
[ENA]
¡û
>W1710522728
FNHK01000024
Bacillota
Halanaerobium congolense [FNHK]
39078
39003
-
Glu
TTC
[ENA]
¡û
>W1710553062
FOHG01000059
Bacillota
Halanaerobium congolense [FOHG]
4784
4709
-
Glu
TTC
[ENA]
¡û
>W1710553288
FOHM01000003
Bacillota
Halanaerobium congolense [FOHM]
197050
196975
-
Glu
TTC
[ENA]
¡û
>W1710568123
FOTI01000002
Bacillota
Halanaerobium salsuginis [FOTI]
45648
45723
+
Glu
TTC
[ENA]
¡û
>W1710572836
FOWY01000063
Bacillota
Halanaerobium congolense [FOWY]
1589
1664
+
Glu
TTC
[ENA]
¡û
>W1710592915
FRCV01000004
Bacillota
Halanaerobium congolense [FRCV]
144491
144416
-
Glu
TTC
[ENA]
¡û
>W1710597255
FTNC01000001
Bacillota
Halanaerobium kushneri [FTNC]
208258
208333
+
Glu
TTC
[ENA]
¡û
>W1710597277
FTNC01000023
Bacillota
Halanaerobium kushneri [FTNC]
13211
13136
-
Glu
TTC
[ENA]
¡û
>W1710726522
LFRS01000058
Bacillota
Halothermothrix sp. DTU029 [LFRS]
584
659
+
Glu
TTC
[ENA]
¡û
>W1710726557
LFRS01000183
Bacillota
Halothermothrix sp. DTU029 [LFRS]
45915
45840
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK