This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.278261 (11 seq.)
>W1711404420
MFYK01000012
Unclassified
Candidatus Peribacteria bacterium RIFOXYB1_FULL_57_12 [MFYK]
26461
26536
+
Thr
CGT
[ENA]
¡û
>W1711404532
MFYN01000007
Unclassified
Candidatus Peribacteria bacterium RIFOXYC1_FULL_58_8 [MFYN]
12739
12814
+
Thr
CGT
[ENA]
¡û
>W1711411541
MGTF01000039
Unclassified
Deltaproteobacteria bacterium RIFOXYD2_FULL_66_9 [MGTF]
650
575
-
Thr
CGT
[ENA]
¡û
>W1711582985
MNWP01000006
Unclassified
Candidatus Peregrinibacteria bacterium CG1_02_54_53 [MNWP]
10385
10460
+
Thr
CGT
[ENA]
¡û
>WENV180256221
OBEQ010795182
[OBEQ] groundwater metagenome; groundwater
268
343
+
Thr
CGT
[ENA]
¢þ
>WENV183671896
ORJL011112948
[ORJL] groundwater metagenome; groundwater
52358
52433
+
Thr
CGT
[ENA]
¢þ
>C161050427
CP013062
Unclassified
Candidatus Peribacter riflensis [CP013062]
25121
25196
+
Thr
CGT
-
¡û
>C161050471
CP013063
Unclassified
Candidatus Peribacter riflensis [CP013063]
25121
25196
+
Thr
CGT
-
¡û
>C161050515
CP013064
Unclassified
Candidatus Peribacter riflensis [CP013064]
25121
25196
+
Thr
CGT
-
¡û
>C161050559
CP013065
Unclassified
Candidatus Peribacter riflensis [CP013065]
25121
25196
+
Thr
CGT
-
¡û
>C161050603
CP013066
Unclassified
Candidatus Peribacter riflensis [CP013066]
25121
25196
+
Thr
CGT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK