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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283442 (11 seq.)
>W1711135916
LUZQ01000004
Betaproteobacteria
Burkholderiales bacterium Beta_01 [LUZQ]
44387
44312
-
Phe
GAA
[ENA]
¡û
>C171098253
CP019697
Betaproteobacteria
Paenalcaligenes hominis 15S00501 [CP019697]
2006755
2006680
-
Phe
GAA
-
¡û
>C171115791
CP021109
Betaproteobacteria
Bordetella genomosp. 9 AU17164 [CP021109]
4211548
4211623
+
Phe
GAA
-
¡û
>C171115838
CP021110
Betaproteobacteria
Bordetella genomosp. 9 AU14267 [CP021110]
4111620
4111695
+
Phe
GAA
-
¡û
>WENV170656537
JTFO01022319
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
1575
1650
+
Phe
GAA
[ENA]
¢þ
>WENV170689598
LFRM01303029
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
177
102
-
Phe
GAA
[ENA]
¢þ
>W1810580286
QETA01000005
Betaproteobacteria
Corticimicrobacter populi 3d-2-2 [QETA]
188488
188413
-
Phe
GAA
[ENA]
¡û
>C151081649
CP011371
Betaproteobacteria
Caldimonas brevitalea DSM 7029 [CP011371]
391602
391677
+
Phe
GAA
[Ensembl]
¡û
>C161094164
CP016170
Betaproteobacteria
Bordetella bronchialis AU3182 [CP016170]
5413586
5413661
+
Phe
GAA
-
¡û
>C161094211
CP016171
Betaproteobacteria
Bordetella bronchialis AU17976 [CP016171]
5499482
5499557
+
Phe
GAA
[Ensembl]
¡û
>W1610947036
LUZQ01000004
Betaproteobacteria
Burkholderiales bacterium Beta_01 [LUZQ]
44387
44312
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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