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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.287430 (10 seq.)
>WENV181228625
OFEH01000513
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
11830
11757
-
Trp
CCA
[ENA]
¢þ
>WENV181406780
OGCG01001366
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
11826
11753
-
Trp
CCA
[ENA]
¢þ
>C08005576
CP001130
Aquificota
Hydrogenobaculum sp. Y04AAS1 [CP001130]
223890
223963
+
Trp
CCA
[Ensembl]
¡û
>W09107153
ABFI01000049
Aquificota
Hydrogenobaculum sp. Y04AAS1 [ABFI]
812
739
-
Trp
CCA
[ENA]
¡û
>C151003645
CP002726
Aquificota
Hydrogenobaculum sp. 3684 [CP002726]
221220
221293
+
Trp
CCA
[Ensembl]
¡û
>C151003689
CP002809
Aquificota
Hydrogenobaculum sp. SHO [CP002809]
221256
221329
+
Trp
CCA
[Ensembl]
¡û
>W10115214
ADJO01000018
Aquificota
Hydrogenobaculum sp. SN [ADJO]
453
526
+
Trp
CCA
[ENA]
¡û
>W11118800
ADJO01000018
Aquificota
Hydrogenobaculum sp. SN [ADJO]
453
526
+
Trp
CCA
[ENA]
¡û
>C131013385
CP004347
Aquificota
Hydrogenobaculum sp. HO [CP004347]
221254
221327
+
Trp
CCA
[Ensembl]
¡û
>C131013696
CP004390
Aquificota
Hydrogenobaculum sp. SN [CP004390]
221215
221288
+
Trp
CCA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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