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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289276 (26 seq.)
>W141088571
AUVG01000032
Bacillota
[Clostridium] cellulosi CS-4-4 [AUVG]
118
193
+
Asn
GTT
[ENA]
¡û
>WENV170690544
LFRM01347332
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
264
339
+
Asn
GTT
[ENA]
¢þ
>WENV170719418
LSQX01113772
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
11429
11354
-
Asn
GTT
[ENA]
¢þ
>WENV170784121
MCHG01000019
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
83
158
+
Asn
GTT
[ENA]
¢þ
>WENV170784189
MCHG01000102
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
33061
32986
-
Asn
GTT
[ENA]
¢þ
>C181115565
CP025286
Bacillota
Ethanoligenens harbinense YUAN-3 [CP025286]
2980288
2980213
-
Asn
GTT
-
¡û
>C181115575
CP025286
Bacillota
Ethanoligenens harbinense YUAN-3 [CP025286]
2299483
2299408
-
Asn
GTT
-
¡û
>C191031568
CP025287
Bacillota
Ethanoligenens harbinense B49 [CP025287]
2945403
2945328
-
Asn
GTT
-
¡û
>C191031578
CP025287
Bacillota
Ethanoligenens harbinense B49 [CP025287]
2264611
2264536
-
Asn
GTT
-
¡û
>C191031623
CP025288
Bacillota
Ethanoligenens harbinense X-29 [CP025288]
3070896
3070821
-
Asn
GTT
-
¡û
>C191031633
CP025288
Bacillota
Ethanoligenens harbinense X-29 [CP025288]
2387651
2387576
-
Asn
GTT
-
¡û
>C191072234
CP030278
Bacillota
Ethanoligenens harbinense W1 [CP030278]
2980285
2980210
-
Asn
GTT
-
¡û
>C191072244
CP030278
Bacillota
Ethanoligenens harbinense W1 [CP030278]
2299479
2299404
-
Asn
GTT
-
¡û
>W1910884602
NEMB01000003
Bacillota
Acetivibrio saccincola A7 [NEMB]
3577860
3577785
-
Asn
GTT
[ENA]
¡û
>W1910884608
NEMB01000003
Bacillota
Acetivibrio saccincola A7 [NEMB]
2990886
2990811
-
Asn
GTT
[ENA]
¡û
>W1810759896
QPJT01000016
Bacillota
Anaerobacterium chartisolvens DSM 27016 [QPJT]
40174
40099
-
Asn
GTT
[ENA]
¡û
>W1810759903
QPJT01000035
Bacillota
Anaerobacterium chartisolvens DSM 27016 [QPJT]
39474
39399
-
Asn
GTT
[ENA]
¡û
>C151102729
LM995447
Bacillota
[Clostridium] cellulosi [LM995447]
119875
119950
+
Asn
GTT
[Ensembl]
¡û
>W10115294
ADJQ01000011
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
86332
86257
-
Asn
GTT
[ENA]
¡û
>W10115309
ADJQ01000028
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
30799
30724
-
Asn
GTT
[ENA]
¡û
>W10115317
ADJQ01000068
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
1042
1117
+
Asn
GTT
[ENA]
¡û
>C11108761
CP002400
Bacillota
Ethanoligenens harbinense YUAN-3 [CP002400]
2979683
2979608
-
Asn
GTT
[Ensembl]
¡û
>C11108771
CP002400
Bacillota
Ethanoligenens harbinense YUAN-3 [CP002400]
2299480
2299405
-
Asn
GTT
[Ensembl]
¡û
>W11118880
ADJQ01000011
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
86332
86257
-
Asn
GTT
[ENA]
¡û
>W11118895
ADJQ01000028
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
30799
30724
-
Asn
GTT
[ENA]
¡û
>W11118903
ADJQ01000068
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
1042
1117
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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