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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.290029 (43 seq.)
>W1710797326
LJSY01000062
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO18 [LJSY]
13964
14039
+
Thr
TGT
[ENA]
¡û
>W1710890977
LNCI01000009
Alphaproteobacteria
Tropicimonas marinistellae SF-16 [LNCI]
69201
69126
-
Thr
TGT
[ENA]
¡û
>C171035281
CP015039
Alphaproteobacteria
Rhodovulum sp. P5 [CP015039]
107820
107895
+
Thr
TGT
-
¡û
>C171064566
CP017622
Alphaproteobacteria
Ketogulonicigenium vulgare SPU B805 [CP017622]
933693
933618
-
Thr
TGT
-
¡û
>C171101174
CP019937
Alphaproteobacteria
Ketogulonicigenium robustum SPU_B003 [CP019937]
599591
599516
-
Thr
TGT
-
¡û
>WENV181233967
OFET01000447
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
125
50
-
Thr
TGT
[ENA]
¢þ
>WENV181234411
OFEU01000105
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
637
562
-
Thr
TGT
[ENA]
¢þ
>W141237292
BBJC01000002
Alphaproteobacteria
Falsirhodobacter sp. alg1 [BBJC]
415503
415428
-
Thr
TGT
[ENA]
¡û
>WENV183708099
PDWI01012898
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
5644
5569
-
Thr
TGT
[ENA]
¢þ
>WENV183710476
PDWI01047382
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3352
3427
+
Thr
TGT
[ENA]
¢þ
>WENV183711813
PDWI01081197
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1337
1412
+
Thr
TGT
[ENA]
¢þ
>WENV183717398
PDWJ01000856
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
8012
7937
-
Thr
TGT
[ENA]
¢þ
>WENV170024248
BCQL01032716
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
383
308
-
Thr
TGT
[ENA]
¢þ
>ENV08002569
ABPX01007991
microbial mat metagenome; Guerrero Negro Hypersaline Mat 09; altitude 310m AMSL; sample depth 1m below water level, 22-34mm depth into the mat
785
710
-
Thr
TGT
[ENA]
¡û
>WENV170366895
CETO01148603
[CETO] marine metagenome genome assembly TARA_122_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
348
273
-
Thr
TGT
[ENA]
¢þ
>WENV170673931
LAZR01035278
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
884
959
+
Thr
TGT
[ENA]
¢þ
>WENV170680732
LFEF01015738
[LFEF] freshwater metagenome; waterbloom
524
449
-
Thr
TGT
[ENA]
¢þ
>WENV170710067
LNFM01001118
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
43804
43729
-
Thr
TGT
[ENA]
¢þ
>WENV170714088
LNFM01053398
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1596
1671
+
Thr
TGT
[ENA]
¢þ
>WENV170900779
MDTD01159370
[MDTD] marine metagenome; seawater
3393
3318
-
Thr
TGT
[ENA]
¢þ
>WENV170957938
MKWU01000327
[MKWU] sponge metagenome;
61939
61864
-
Thr
TGT
[ENA]
¢þ
>C191123095
CP034328
Alphaproteobacteria
Tabrizicola piscis K13M18 [CP034328]
128092
128017
-
Thr
TGT
-
¡û
>C191127854
CP034588
Alphaproteobacteria
Silicimonas algicola KC90 [CP034588]
2020597
2020672
+
Thr
TGT
-
¡û
>W1910548995
FZOY01000002
Alphaproteobacteria
Tropicimonas sediminicola DSM 29339 [FZOY]
624891
624816
-
Thr
TGT
[ENA]
¡û
>W1911696507
QMEJ01000002
Alphaproteobacteria
Tropicimonas sp. IMCC34011 [QMEJ]
373839
373764
-
Thr
TGT
[ENA]
¡û
>W1911696554
QMEK01000001
Alphaproteobacteria
Tropicimonas sp. IMCC34043 [QMEK]
1049273
1049198
-
Thr
TGT
[ENA]
¡û
>W1810174001
PJON01000001
Alphaproteobacteria
Tabrizicola aquatica RCRI19 [PJON]
620305
620380
+
Thr
TGT
[ENA]
¡û
>W1810268907
PRDS01000009
Alphaproteobacteria
Albidovulum inexpectatum DSM 12048 [PRDS]
75806
75731
-
Thr
TGT
[ENA]
¡û
>W1810351346
PVEP01000001
Alphaproteobacteria
Defluviimonas denitrificans DSM 18921 [PVEP]
133810
133885
+
Thr
TGT
[ENA]
¡û
>W1810584048
QEYE01000039
Alphaproteobacteria
Maritimibacter sp. 55A14 [QEYE]
8817
8892
+
Thr
TGT
[ENA]
¡û
>W1810596846
QGGV01000003
Alphaproteobacteria
Silicimonas algicola DSM 103371 [QGGV]
365680
365755
+
Thr
TGT
[ENA]
¡û
>W1810596894
QGGW01000010
Alphaproteobacteria
Roseicyclus mahoneyensis DSM 16097 [QGGW]
968
893
-
Thr
TGT
[ENA]
¡û
>W1810672117
QJTE01000009
Alphaproteobacteria
Pseudoroseicyclus aestuarii CECT 9025 [QJTE]
20604
20529
-
Thr
TGT
[ENA]
¡û
>C151006156
CP004372
Alphaproteobacteria
Roseibacterium elongatum DSM 19469 DFL-43 [CP004372]
3133465
3133390
-
Thr
TGT
[Ensembl]
¡û
>C11111846
CP002018
Alphaproteobacteria
Ketogulonicigenium vulgare WSH-001 [CP002018]
388406
388331
-
Thr
TGT
[Ensembl]
¡û
>C11111898
CP002224
Alphaproteobacteria
Ketogulonicigenium vulgare Y25 [CP002224]
793071
792996
-
Thr
TGT
[Ensembl]
¡û
>C161043376
CP012661
Alphaproteobacteria
Frigidibacter mobilis cai42 [CP012661]
2417245
2417170
-
Thr
TGT
[Ensembl]
¡û
>C161047290
CP012908
Alphaproteobacteria
Ketogulonicigenium vulgare Hbe602 [CP012908]
779628
779553
-
Thr
TGT
-
¡û
>C161100016
CP016592
Alphaproteobacteria
Ketogulonicigenium vulgare SKV [CP016592]
779481
779406
-
Thr
TGT
-
¡û
>W1610661283
LJSY01000062
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO18 [LJSY]
13964
14039
+
Thr
TGT
[ENA]
¡û
>W1610751373
LNCI01000009
Alphaproteobacteria
Tropicimonas marinistellae SF-16 [LNCI]
69201
69126
-
Thr
TGT
[ENA]
¡û
>W1710587489
FQYO01000001
Alphaproteobacteria
Wenxinia saemankumensis [FQYO]
506908
506833
-
Thr
TGT
[ENA]
¡û
>W1710595088
FSRS01000001
Alphaproteobacteria
Rhodovulum sp. ES.010 [FSRS]
500508
500583
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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