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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.296761 (85 seq.)
>W1710880614
LMSL01000034
Gammaproteobacteria
Frateuria sp. Soil773 [LMSL]
253577
253652
+
Thr
GGT
[ENA]
¡û
>W1711384970
MEDO01000026
Gammaproteobacteria
Arenimonas sp. SCN 70-307 [MEDO]
60384
60459
+
Thr
GGT
[ENA]
¡û
>W1711386538
MEFO01000005
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-123 [MEFO]
167734
167809
+
Thr
GGT
[ENA]
¡û
>W1711387178
MEGJ01000015
Gammaproteobacteria
Rhodanobacter sp. SCN 69-32 [MEGJ]
241
166
-
Thr
GGT
[ENA]
¡û
>W1711387250
MEGL01000043
Gammaproteobacteria
Rhodanobacter sp. SCN 68-63 [MEGL]
258
183
-
Thr
GGT
[ENA]
¡û
>W1711424098
MIDT01000050
Gammaproteobacteria
Xanthomonadales bacterium GWF1_69_6 [MIDT]
208
133
-
Thr
GGT
[ENA]
¡û
>W131046207
AMSF01000086
Gammaproteobacteria
Dyella ginsengisoli LA-4 [AMSF]
53779
53854
+
Thr
GGT
[ENA]
¡û
>W131215577
ATVD01000001
Gammaproteobacteria
Arenimonas oryziterrae DSM 21050 [ATVD]
527280
527205
-
Thr
GGT
[ENA]
¡û
>W131227527
AUFF01000003
Gammaproteobacteria
Arenimonas composti DSM 18010 [AUFF]
1330
1255
-
Thr
GGT
[ENA]
¡û
>W1711506116
MKWC01000027
Gammaproteobacteria
Rhodanobacter sp. 68-29 [MKWC]
162
87
-
Thr
GGT
[ENA]
¡û
>C171063368
CP017480
Gammaproteobacteria
Luteibacter rhizovicinus DSM 16549 LJ96 [CP017480]
2664356
2664431
+
Thr
GGT
-
¡û
>WENV180297791
OBJA01085193
[OBJA] soil metagenome; sediment, water from around vicinity
143
218
+
Thr
GGT
[ENA]
¢þ
>WENV180304602
OBJI01166303
[OBJI] soil metagenome; soil
235
160
-
Thr
GGT
[ENA]
¢þ
>WENV180344682
OBLL01111951
[OBLL] soil metagenome; soil
17
92
+
Thr
GGT
[ENA]
¢þ
>W141094203
AVCH01000049
Gammaproteobacteria
Arenimonas malthae CC-JY-1 [AVCH]
6305
6380
+
Thr
GGT
[ENA]
¡û
>W141094250
AVCI01000005
Gammaproteobacteria
Arenimonas oryziterrae DSM 21050 = YC6267 [AVCI]
164
89
-
Thr
GGT
[ENA]
¡û
>W141094294
AVCJ01000006
Gammaproteobacteria
Arenimonas donghaensis DSM 18148 = HO3-R19 [AVCJ]
117
42
-
Thr
GGT
[ENA]
¡û
>W141094333
AVCK01000007
Gammaproteobacteria
Arenimonas metalli CF5-1 [AVCK]
11602
11677
+
Thr
GGT
[ENA]
¡û
>WENV181308054
OFIS01000159
[OFIS] sludge metagenome; sludge
41309
41234
-
Thr
GGT
[ENA]
¢þ
>WENV181401526
OFTX01000640
[OFTX] sludge metagenome; sludge
16644
16719
+
Thr
GGT
[ENA]
¢þ
>WENV181402295
OFTY01000459
[OFTY] sludge metagenome; sludge
28739
28814
+
Thr
GGT
[ENA]
¢þ
>W141148235
AWXU01000009
Gammaproteobacteria
Arenimonas composti TR7-09 = DSM 18010 [AWXU]
176
101
-
Thr
GGT
[ENA]
¡û
>WENV182555527
OJDB01001695
[OJDB] seawater metagenome; Sea water
713
788
+
Thr
GGT
[ENA]
¢þ
>WENV182555550
OJDC01000003
[OJDC] seawater metagenome; Sea water
1494
1569
+
Thr
GGT
[ENA]
¢þ
>WENV182559454
OJDP01011046
[OJDP] seawater metagenome; Sea water
206
131
-
Thr
GGT
[ENA]
¢þ
>WENV182560268
OJDT01019901
[OJDT] seawater metagenome; Sea water
577
652
+
Thr
GGT
[ENA]
¢þ
>WENV182572974
OJFO01010499
[OJFO] seawater metagenome; Sea water
218
143
-
Thr
GGT
[ENA]
¢þ
>WENV182577424
OJGE01006661
[OJGE] seawater metagenome; Sea water
218
143
-
Thr
GGT
[ENA]
¢þ
>WENV182577579
OJGG01007402
[OJGG] seawater metagenome; Sea water
218
143
-
Thr
GGT
[ENA]
¢þ
>WENV182589164
OJHZ01006102
[OJHZ] seawater metagenome; Sea water
577
652
+
Thr
GGT
[ENA]
¢þ
>WENV183058321
OLHP01008405
[OLHP] seawater metagenome; Sea water
571
646
+
Thr
GGT
[ENA]
¢þ
>WENV183058400
OLHQ01008755
[OLHQ] seawater metagenome; Sea water
539
614
+
Thr
GGT
[ENA]
¢þ
>WENV183697949
OUNK010469953
[OUNK] metagenome; soil
326
251
-
Thr
GGT
[ENA]
¢þ
>WENV170577808
FSSH01001429
[FSSH] freshwater metagenome; drinking water
3261
3336
+
Thr
GGT
[ENA]
¢þ
>WENV170708734
LNAQ01000351
[LNAQ] soil metagenome; soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1538
1613
+
Thr
GGT
[ENA]
¢þ
>WENV170711630
LNFM01006158
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
19723
19798
+
Thr
GGT
[ENA]
¢þ
>WENV170712604
LNFM01015383
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
203
128
-
Thr
GGT
[ENA]
¢þ
>WENV170725022
LSQX01327958
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
234
159
-
Thr
GGT
[ENA]
¢þ
>C191003486
AP018560
Gammaproteobacteria
Aerosticca soli Dysh456 [AP018560]
2166525
2166450
-
Thr
GGT
-
¡û
>C191138603
CP035300
Gammaproteobacteria
Dyella sp. M7H15-1 [CP035300]
3320339
3320414
+
Thr
GGT
-
¡û
>C191186003
CP041046
Gammaproteobacteria
Luteibacter pinisoli MAH-14 [CP041046]
1101949
1102024
+
Thr
GGT
-
¡û
>W141564963
JIBD01000020
Gammaproteobacteria
Dyella japonica UNC79MFTsu3.2 [JIBD]
1340
1265
-
Thr
GGT
[ENA]
¡û
>W141820692
JQNB01000001
Gammaproteobacteria
Luteibacter sp. 9135 [JQNB]
2049709
2049784
+
Thr
GGT
[ENA]
¡û
>W141820814
JQND01000001
Gammaproteobacteria
Luteibacter sp. 9145 [JQND]
3557198
3557123
-
Thr
GGT
[ENA]
¡û
>W141821256
JQNL01000001
Gammaproteobacteria
Luteibacter sp. 9143a 9143 [JQNL]
3369683
3369758
+
Thr
GGT
[ENA]
¡û
>W1910896576
NFZS01000001
Gammaproteobacteria
Dyella jiangningensis FCAV SCS01 [NFZS]
1265732
1265807
+
Thr
GGT
[ENA]
¡û
>W1911199811
NRDP01000025
Gammaproteobacteria
Dyella sp. AD56 [NRDP]
87009
87084
+
Thr
GGT
[ENA]
¡û
>W1810354862
PVLF01000022
Gammaproteobacteria
Arenimonas caeni z29 [PVLF]
67126
67201
+
Thr
GGT
[ENA]
¡û
>W1810477563
QAOX01000003
Gammaproteobacteria
Luteibacter sp. OK325 [QAOX]
87492
87417
-
Thr
GGT
[ENA]
¡û
>W1810485598
QAVX01000022
Gammaproteobacteria
Dyella sp. C11 [QAVX]
57744
57669
-
Thr
GGT
[ENA]
¡û
>W1810597229
QGHC01000006
Gammaproteobacteria
Fulvimonas soli DSM 14263 [QGHC]
39931
40006
+
Thr
GGT
[ENA]
¡û
>W1810628346
QICJ01000005
Gammaproteobacteria
Dyella sp. AtDHG13 [QICJ]
250882
250807
-
Thr
GGT
[ENA]
¡û
>W1810629423
QIRF01000005
Gammaproteobacteria
Dyella sp. C9 [QIRF]
110530
110455
-
Thr
GGT
[ENA]
¡û
>W1810783270
QQSY01000004
Gammaproteobacteria
Dyella solisilvae DHG54 [QQSY]
329148
329223
+
Thr
GGT
[ENA]
¡û
>W1810785088
QRBE01000003
Gammaproteobacteria
Dyella monticola 4G-K06 [QRBE]
445050
445125
+
Thr
GGT
[ENA]
¡û
>W1810785156
QRBF01000005
Gammaproteobacteria
Dyella psychrodurans 4MSK11 [QRBF]
250
175
-
Thr
GGT
[ENA]
¡û
>C151023745
CP007444
Gammaproteobacteria
Dyella jiangningensis SBZ3-12 [CP007444]
3136556
3136481
-
Thr
GGT
[Ensembl]
¡û
>C151039100
CP008884
Gammaproteobacteria
Dyella japonica A8 [CP008884]
4304211
4304136
-
Thr
GGT
[Ensembl]
¡û
>W1510018838
BBUM02000110
Gammaproteobacteria
Mizugakiibacter sediminis skMP5 [BBUM]
188
113
-
Thr
GGT
[ENA]
¡û
>W1511305082
JPLA01000069
Gammaproteobacteria
Dyella japonica DSM 16301 [JPLA]
161
86
-
Thr
GGT
[ENA]
¡û
>W1511433890
JUHO01000001
Gammaproteobacteria
Luteibacter sp. 9133 [JUHO]
981410
981485
+
Thr
GGT
[ENA]
¡û
>W1511547578
JZRB01000020
Gammaproteobacteria
Luteibacter yeojuensis SU11 [JZRB]
18257
18182
-
Thr
GGT
[ENA]
¡û
>W1511686286
LFQR01000042
Gammaproteobacteria
Frateuria defendens Hyalesthes Obsoletus HyOG [LFQR]
129677
129602
-
Thr
GGT
[ENA]
¡û
>C121011540
CP003350
Gammaproteobacteria
Frateuria aurantia DSM 6220 [CP003350]
332583
332658
+
Thr
GGT
[Ensembl]
¡û
>C121011547
CP003350
Gammaproteobacteria
Frateuria aurantia DSM 6220 [CP003350]
709240
709315
+
Thr
GGT
[Ensembl]
¡û
>C161078255
CP014841
Gammaproteobacteria
Dyella thiooxydans ATSB10 [CP014841]
2070166
2070091
-
Thr
GGT
[Ensembl]
¡û
>W121017520
AGRV01000002
Gammaproteobacteria
Frateuria aurantia DSM 6220 [AGRV]
40812
40887
+
Thr
GGT
[ENA]
¡û
>W121017545
AGRV01000010
Gammaproteobacteria
Frateuria aurantia DSM 6220 [AGRV]
241943
241868
-
Thr
GGT
[ENA]
¡û
>W121071196
AJXS01000278
Gammaproteobacteria
Rhodanobacter sp. 115 [AJXS]
193
118
-
Thr
GGT
[ENA]
¡û
>W121113904
ALOY01000176
Gammaproteobacteria
Dyella japonica A8 [ALOY]
83376
83451
+
Thr
GGT
[ENA]
¡û
>W1610616770
LGRQ01000011
Gammaproteobacteria
Luteibacter rhizovicinus [LGRQ]
17133
17058
-
Thr
GGT
[ENA]
¡û
>W1610742960
LMSL01000034
Gammaproteobacteria
Frateuria sp. Soil773 [LMSL]
253577
253652
+
Thr
GGT
[ENA]
¡û
>WENV079813
AATN01001220
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
180
255
+
Thr
GGT
[ENA]
>W1710513592
FNAG01000009
Gammaproteobacteria
Aquimonas voraii [FNAG]
133176
133251
+
Thr
GGT
[ENA]
¡û
>W1710515282
FNBR01000003
Gammaproteobacteria
Dyella sp. 333MFSha [FNBR]
327
252
-
Thr
GGT
[ENA]
¡û
>W1710519799
FNFA01000004
Gammaproteobacteria
Dyella jiangningensis [FNFA]
97664
97739
+
Thr
GGT
[ENA]
¡û
>W1710545794
FOBU01000002
Gammaproteobacteria
Luteibacter sp. UNCMF331Sha3.1 [FOBU]
349988
350063
+
Thr
GGT
[ENA]
¡û
>W1710548726
FODZ01000008
Gammaproteobacteria
Luteibacter sp. UNC138MFCol5.1 [FODZ]
1116
1041
-
Thr
GGT
[ENA]
¡û
>W1710555200
FOJE01000001
Gammaproteobacteria
Luteibacter sp. 329MFSha [FOJE]
2176963
2176888
-
Thr
GGT
[ENA]
¡û
>W1710560347
FONH01000029
Gammaproteobacteria
Dyella marensis [FONH]
1340
1265
-
Thr
GGT
[ENA]
¡û
>W1710567377
FOSR01000019
Gammaproteobacteria
Rhodanobacter glycinis [FOSR]
68893
68968
+
Thr
GGT
[ENA]
¡û
>W1710575651
FOZI01000001
Gammaproteobacteria
Dyella sp. OK004 [FOZI]
1335
1260
-
Thr
GGT
[ENA]
¡û
>W1710579674
FPIS01000002
Gammaproteobacteria
Luteibacter sp. UNCMF366Tsu5.1 [FPIS]
559183
559258
+
Thr
GGT
[ENA]
¡û
>W1710603074
FUYT01000014
Gammaproteobacteria
Luteibacter sp. 22Crub2.1 [FUYT]
165831
165906
+
Thr
GGT
[ENA]
¡û
>W1710742109
LGRQ01000011
Gammaproteobacteria
Luteibacter rhizovicinus [LGRQ]
17133
17058
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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