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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.297864 (128 seq.)
>W1710859298
LMCB01000002
Alphaproteobacteria
Pseudovibrio axinellae [LMCB]
90974
91050
+
Asp
GTC
[ENA]
¡û
>W1710859393
LMCC01000015
Alphaproteobacteria
Pseudovibrio sp. Ad13 [LMCC]
124178
124102
-
Asp
GTC
[ENA]
¡û
>W1710859394
LMCC01000015
Alphaproteobacteria
Pseudovibrio sp. Ad13 [LMCC]
124041
123965
-
Asp
GTC
[ENA]
¡û
>W1710859395
LMCC01000015
Alphaproteobacteria
Pseudovibrio sp. Ad13 [LMCC]
123919
123843
-
Asp
GTC
[ENA]
¡û
>W1710859396
LMCC01000015
Alphaproteobacteria
Pseudovibrio sp. Ad13 [LMCC]
123795
123719
-
Asp
GTC
[ENA]
¡û
>W1710859450
LMCD01000020
Alphaproteobacteria
Pseudovibrio sp. Ad14 [LMCD]
178349
178273
-
Asp
GTC
[ENA]
¡û
>W1710859513
LMCE01000088
Alphaproteobacteria
Pseudovibrio sp. Ad26 [LMCE]
99513
99437
-
Asp
GTC
[ENA]
¡û
>W1710859567
LMCF01000143
Alphaproteobacteria
Pseudovibrio sp. Ad37 [LMCF]
40281
40205
-
Asp
GTC
[ENA]
¡û
>W1710859568
LMCF01000143
Alphaproteobacteria
Pseudovibrio sp. Ad37 [LMCF]
40144
40068
-
Asp
GTC
[ENA]
¡û
>W1710859569
LMCF01000143
Alphaproteobacteria
Pseudovibrio sp. Ad37 [LMCF]
40022
39946
-
Asp
GTC
[ENA]
¡û
>W1710859570
LMCF01000143
Alphaproteobacteria
Pseudovibrio sp. Ad37 [LMCF]
39898
39822
-
Asp
GTC
[ENA]
¡û
>W1710859631
LMCG01000071
Alphaproteobacteria
Pseudovibrio sp. Ad46 [LMCG]
117815
117739
-
Asp
GTC
[ENA]
¡û
>W1710859632
LMCG01000071
Alphaproteobacteria
Pseudovibrio sp. Ad46 [LMCG]
117678
117602
-
Asp
GTC
[ENA]
¡û
>W1710859633
LMCG01000071
Alphaproteobacteria
Pseudovibrio sp. Ad46 [LMCG]
117556
117480
-
Asp
GTC
[ENA]
¡û
>W1710859634
LMCG01000071
Alphaproteobacteria
Pseudovibrio sp. Ad46 [LMCG]
117432
117356
-
Asp
GTC
[ENA]
¡û
>W1710859686
LMCH01000025
Alphaproteobacteria
Pseudovibrio sp. Ad5 [LMCH]
204599
204675
+
Asp
GTC
[ENA]
¡û
>W1710859687
LMCH01000025
Alphaproteobacteria
Pseudovibrio sp. Ad5 [LMCH]
204736
204812
+
Asp
GTC
[ENA]
¡û
>W1710859688
LMCH01000025
Alphaproteobacteria
Pseudovibrio sp. Ad5 [LMCH]
204858
204934
+
Asp
GTC
[ENA]
¡û
>W1710859689
LMCH01000025
Alphaproteobacteria
Pseudovibrio sp. Ad5 [LMCH]
204982
205058
+
Asp
GTC
[ENA]
¡û
>W1710859768
LMCI01000043
Alphaproteobacteria
Pseudovibrio sp. W64 [LMCI]
79941
79865
-
Asp
GTC
[ENA]
¡û
>W1710859769
LMCI01000043
Alphaproteobacteria
Pseudovibrio sp. W64 [LMCI]
79700
79624
-
Asp
GTC
[ENA]
¡û
>W1710859770
LMCI01000043
Alphaproteobacteria
Pseudovibrio sp. W64 [LMCI]
79576
79500
-
Asp
GTC
[ENA]
¡û
>W1710859805
LMCJ01000017
Alphaproteobacteria
Pseudovibrio sp. W74 [LMCJ]
520259
520183
-
Asp
GTC
[ENA]
¡û
>W1710859806
LMCJ01000017
Alphaproteobacteria
Pseudovibrio sp. W74 [LMCJ]
520135
520059
-
Asp
GTC
[ENA]
¡û
>W1710859842
LMCK01000024
Alphaproteobacteria
Pseudovibrio sp. WM33 [LMCK]
299
223
-
Asp
GTC
[ENA]
¡û
>W1710859843
LMCK01000024
Alphaproteobacteria
Pseudovibrio sp. WM33 [LMCK]
162
86
-
Asp
GTC
[ENA]
¡û
>W1710859865
LMCK01000091
Alphaproteobacteria
Pseudovibrio sp. WM33 [LMCK]
1
77
+
Asp
GTC
[ENA]
¡û
>W1710863824
LMFL01000001
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
231940
231864
-
Asp
GTC
[ENA]
¡û
>W1710863896
LMFL01000071
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
2556
2632
+
Asp
GTC
[ENA]
¡û
>W1710863897
LMFL01000071
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
2680
2756
+
Asp
GTC
[ENA]
¡û
>W1710865527
LMGT01000001
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
1092018
1091942
-
Asp
GTC
[ENA]
¡û
>W131191566
ASJA01000007
Alphaproteobacteria
Euryhalocaulis caribicus JL2009 [ASJA]
57970
58046
+
Asp
GTC
[ENA]
¡û
>W131231505
AUIM01000004
Alphaproteobacteria
Stappia stellulata DSM 5886 [AUIM]
531331
531255
-
Asp
GTC
[ENA]
¡û
>W131231506
AUIM01000004
Alphaproteobacteria
Stappia stellulata DSM 5886 [AUIM]
531208
531132
-
Asp
GTC
[ENA]
¡û
>C171088737
CP019044
Alphaproteobacteria
Salaquimonas pukyongi RR3-28 [CP019044]
1630890
1630814
-
Asp
GTC
-
¡û
>C171094853
CP019508
Alphaproteobacteria
Brevundimonas sp. LM2 [CP019508]
2059598
2059674
+
Asp
GTC
-
¡û
>WENV180015699
FSSX01000162
[FSSX] metagenome; soil
3684
3608
-
Asp
GTC
[ENA]
¢þ
>WENV180026474
FTIT01478897
[FTIT] metagenome; soil
11
87
+
Asp
GTC
[ENA]
¢þ
>WENV180029337
FTJI01777387
[FTJI] metagenome; soil
257
181
-
Asp
GTC
[ENA]
¢þ
>WENV180034854
FTKR01709949
[FTKR] metagenome; soil
257
181
-
Asp
GTC
[ENA]
¢þ
>W141200768
AYYG01000027
Alphaproteobacteria
Labrenzia sp. DG1229 [AYYG]
12512
12588
+
Asp
GTC
[ENA]
¡û
>W141200769
AYYG01000027
Alphaproteobacteria
Labrenzia sp. DG1229 [AYYG]
12645
12721
+
Asp
GTC
[ENA]
¡û
>WENV170003386
AGTN01320589
[AGTN] bioreactor metagenome; poplar biomass
153
229
+
Asp
GTC
[ENA]
¢þ
>WENV170014539
AYRH01001944
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
60
136
+
Asp
GTC
[ENA]
¢þ
>WENV170712999
LNFM01022106
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3437
3513
+
Asp
GTC
[ENA]
¢þ
>WENV170714220
LNFM01061923
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
85
9
-
Asp
GTC
[ENA]
¢þ
>WENV170714665
LNFM01092353
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
8
84
+
Asp
GTC
[ENA]
¢þ
>WENV170714810
LNFM01103876
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
230
306
+
Asp
GTC
[ENA]
¢þ
>WENV170784102
MCHG01000016
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
29380
29456
+
Asp
GTC
[ENA]
¢þ
>WENV170784104
MCHG01000016
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
150279
150355
+
Asp
GTC
[ENA]
¢þ
>WENV170784231
MCHG01000179
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
19380
19304
-
Asp
GTC
[ENA]
¢þ
>C191081600
CP031841
Alphaproteobacteria
Breoghania sp. L-A4 [CP031841]
2242648
2242724
+
Asp
GTC
-
¡û
>W1910285206
FREX01000008
Alphaproteobacteria
Pseudovibrio sp. Alg231-02 [FREX]
69663
69739
+
Asp
GTC
[ENA]
¡û
>W1910285207
FREX01000008
Alphaproteobacteria
Pseudovibrio sp. Alg231-02 [FREX]
69800
69876
+
Asp
GTC
[ENA]
¡û
>W1910285208
FREX01000008
Alphaproteobacteria
Pseudovibrio sp. Alg231-02 [FREX]
69922
69998
+
Asp
GTC
[ENA]
¡û
>W1910285209
FREX01000008
Alphaproteobacteria
Pseudovibrio sp. Alg231-02 [FREX]
70046
70122
+
Asp
GTC
[ENA]
¡û
>W1911538976
OMPG01000020
Alphaproteobacteria
Pseudovibrio ascidiaceicola AU243 [OMPG]
97537
97461
-
Asp
GTC
[ENA]
¡û
>W1911538977
OMPG01000020
Alphaproteobacteria
Pseudovibrio ascidiaceicola AU243 [OMPG]
97400
97324
-
Asp
GTC
[ENA]
¡û
>W1911538978
OMPG01000020
Alphaproteobacteria
Pseudovibrio ascidiaceicola AU243 [OMPG]
97278
97202
-
Asp
GTC
[ENA]
¡û
>W1911538979
OMPG01000020
Alphaproteobacteria
Pseudovibrio ascidiaceicola AU243 [OMPG]
97154
97078
-
Asp
GTC
[ENA]
¡û
>W1810232546
PPCN01000007
Alphaproteobacteria
Roseibium marinum DSM 17023 [PPCN]
250804
250728
-
Asp
GTC
[ENA]
¡û
>W1810232547
PPCN01000007
Alphaproteobacteria
Roseibium marinum DSM 17023 [PPCN]
250672
250596
-
Asp
GTC
[ENA]
¡û
>W1810532653
QCYM01000003
Alphaproteobacteria
Labrenzia sp. 011 [QCYM]
44423
44499
+
Asp
GTC
[ENA]
¡û
>W1810532654
QCYM01000003
Alphaproteobacteria
Labrenzia sp. 011 [QCYM]
44555
44631
+
Asp
GTC
[ENA]
¡û
>W1810608967
QGTR01000001
Alphaproteobacteria
Hoeflea marina DSM 16791 [QGTR]
1141657
1141581
-
Asp
GTC
[ENA]
¡û
>W1810693143
QLLC01000004
Alphaproteobacteria
Brevundimonas bullata HAMBI_262 [QLLC]
112090
112166
+
Asp
GTC
[ENA]
¡û
>W1810693160
QLLC01000014
Alphaproteobacteria
Brevundimonas bullata HAMBI_262 [QLLC]
90114
90190
+
Asp
GTC
[ENA]
¡û
>W1810693161
QLLC01000014
Alphaproteobacteria
Brevundimonas bullata HAMBI_262 [QLLC]
90395
90471
+
Asp
GTC
[ENA]
¡û
>C151083080
CP011479
Alphaproteobacteria
Hoeflea sp. IMCC20628 [CP011479]
1724553
1724629
+
Asp
GTC
[Ensembl]
¡û
>W10109852
ADBM01000004
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
50580
50504
-
Asp
GTC
[ENA]
¡û
>W10127155
AEEB01000003
Alphaproteobacteria
Ahrensia sp. R2A130 [AEEB]
49159
49083
-
Asp
GTC
[ENA]
¡û
>C10102221
CP002102
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [CP002102]
1915320
1915244
-
Asp
GTC
[Ensembl]
¡û
>W11112289
ADBM01000004
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
50580
50504
-
Asp
GTC
[ENA]
¡û
>W11134643
AEEB01000003
Alphaproteobacteria
Ahrensia sp. R2A130 [AEEB]
49159
49083
-
Asp
GTC
[ENA]
¡û
>W1511564329
LADQ01000187
Alphaproteobacteria
Hoeflea sp. BRH_c9 [LADQ]
539
615
+
Asp
GTC
[ENA]
¡û
>W121059392
AIMB01000008
Alphaproteobacteria
Bartonella tamiae Th239 [AIMB]
110969
111045
+
Asp
GTC
[ENA]
¡û
>W121059592
AIMG01000003
Alphaproteobacteria
Bartonella tamiae Th307 [AIMG]
436679
436603
-
Asp
GTC
[ENA]
¡û
>W1610092088
CXTY01000016
Alphaproteobacteria
Roseibium album alba [CXTY]
91168
91092
-
Asp
GTC
[ENA]
¡û
>W1610092089
CXTY01000016
Alphaproteobacteria
Roseibium album alba [CXTY]
91032
90956
-
Asp
GTC
[ENA]
¡û
>W1610540311
JSEP01000024
Alphaproteobacteria
Labrenzia sp. OB1 [JSEP]
47272
47348
+
Asp
GTC
[ENA]
¡û
>W1610540312
JSEP01000024
Alphaproteobacteria
Labrenzia sp. OB1 [JSEP]
47405
47481
+
Asp
GTC
[ENA]
¡û
>W1610585629
LCWX01000239
Alphaproteobacteria
Pseudovibrio sp. POLY-S9 [LCWX]
103621
103545
-
Asp
GTC
[ENA]
¡û
>W1610721644
LMCB01000002
Alphaproteobacteria
Pseudovibrio axinellae [LMCB]
90974
91050
+
Asp
GTC
[ENA]
¡û
>W1610721739
LMCC01000015
Alphaproteobacteria
Pseudovibrio sp. Ad13 [LMCC]
124178
124102
-
Asp
GTC
[ENA]
¡û
>W1610721740
LMCC01000015
Alphaproteobacteria
Pseudovibrio sp. Ad13 [LMCC]
124041
123965
-
Asp
GTC
[ENA]
¡û
>W1610721741
LMCC01000015
Alphaproteobacteria
Pseudovibrio sp. Ad13 [LMCC]
123919
123843
-
Asp
GTC
[ENA]
¡û
>W1610721742
LMCC01000015
Alphaproteobacteria
Pseudovibrio sp. Ad13 [LMCC]
123795
123719
-
Asp
GTC
[ENA]
¡û
>W1610721796
LMCD01000020
Alphaproteobacteria
Pseudovibrio sp. Ad14 [LMCD]
178349
178273
-
Asp
GTC
[ENA]
¡û
>W1610721859
LMCE01000088
Alphaproteobacteria
Pseudovibrio sp. Ad26 [LMCE]
99513
99437
-
Asp
GTC
[ENA]
¡û
>W1610721913
LMCF01000143
Alphaproteobacteria
Pseudovibrio sp. Ad37 [LMCF]
40281
40205
-
Asp
GTC
[ENA]
¡û
>W1610721914
LMCF01000143
Alphaproteobacteria
Pseudovibrio sp. Ad37 [LMCF]
40144
40068
-
Asp
GTC
[ENA]
¡û
>W1610721915
LMCF01000143
Alphaproteobacteria
Pseudovibrio sp. Ad37 [LMCF]
40022
39946
-
Asp
GTC
[ENA]
¡û
>W1610721916
LMCF01000143
Alphaproteobacteria
Pseudovibrio sp. Ad37 [LMCF]
39898
39822
-
Asp
GTC
[ENA]
¡û
>W1610721977
LMCG01000071
Alphaproteobacteria
Pseudovibrio sp. Ad46 [LMCG]
117815
117739
-
Asp
GTC
[ENA]
¡û
>W1610721978
LMCG01000071
Alphaproteobacteria
Pseudovibrio sp. Ad46 [LMCG]
117678
117602
-
Asp
GTC
[ENA]
¡û
>W1610721979
LMCG01000071
Alphaproteobacteria
Pseudovibrio sp. Ad46 [LMCG]
117556
117480
-
Asp
GTC
[ENA]
¡û
>W1610721980
LMCG01000071
Alphaproteobacteria
Pseudovibrio sp. Ad46 [LMCG]
117432
117356
-
Asp
GTC
[ENA]
¡û
>W1610722032
LMCH01000025
Alphaproteobacteria
Pseudovibrio sp. Ad5 [LMCH]
204599
204675
+
Asp
GTC
[ENA]
¡û
>W1610722033
LMCH01000025
Alphaproteobacteria
Pseudovibrio sp. Ad5 [LMCH]
204736
204812
+
Asp
GTC
[ENA]
¡û
>W1610722034
LMCH01000025
Alphaproteobacteria
Pseudovibrio sp. Ad5 [LMCH]
204858
204934
+
Asp
GTC
[ENA]
¡û
>W1610722035
LMCH01000025
Alphaproteobacteria
Pseudovibrio sp. Ad5 [LMCH]
204982
205058
+
Asp
GTC
[ENA]
¡û
>W1610722114
LMCI01000043
Alphaproteobacteria
Pseudovibrio sp. W64 [LMCI]
79941
79865
-
Asp
GTC
[ENA]
¡û
>W1610722115
LMCI01000043
Alphaproteobacteria
Pseudovibrio sp. W64 [LMCI]
79700
79624
-
Asp
GTC
[ENA]
¡û
>W1610722116
LMCI01000043
Alphaproteobacteria
Pseudovibrio sp. W64 [LMCI]
79576
79500
-
Asp
GTC
[ENA]
¡û
>W1610722151
LMCJ01000017
Alphaproteobacteria
Pseudovibrio sp. W74 [LMCJ]
520259
520183
-
Asp
GTC
[ENA]
¡û
>W1610722152
LMCJ01000017
Alphaproteobacteria
Pseudovibrio sp. W74 [LMCJ]
520135
520059
-
Asp
GTC
[ENA]
¡û
>W1610722188
LMCK01000024
Alphaproteobacteria
Pseudovibrio sp. WM33 [LMCK]
299
223
-
Asp
GTC
[ENA]
¡û
>W1610722189
LMCK01000024
Alphaproteobacteria
Pseudovibrio sp. WM33 [LMCK]
162
86
-
Asp
GTC
[ENA]
¡û
>W1610722211
LMCK01000091
Alphaproteobacteria
Pseudovibrio sp. WM33 [LMCK]
1
77
+
Asp
GTC
[ENA]
¡û
>W1610726170
LMFL01000001
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
231940
231864
-
Asp
GTC
[ENA]
¡û
>W1610726242
LMFL01000071
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
2556
2632
+
Asp
GTC
[ENA]
¡û
>W1610726243
LMFL01000071
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
2680
2756
+
Asp
GTC
[ENA]
¡û
>W1610727873
LMGT01000001
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
1092018
1091942
-
Asp
GTC
[ENA]
¡û
>W1710095445
CXTY01000016
Alphaproteobacteria
Roseibium album alba [CXTY]
91168
91092
-
Asp
GTC
[ENA]
¡û
>W1710095446
CXTY01000016
Alphaproteobacteria
Roseibium album alba [CXTY]
91032
90956
-
Asp
GTC
[ENA]
¡û
>W1710527561
FNLB01000006
Alphaproteobacteria
Pseudovibrio sp. Tun.PSC04-5.I4 Tun.PHSC04-5.I4 [FNLB]
1750981
1750905
-
Asp
GTC
[ENA]
¡û
>W1710550687
FOFM01000004
Alphaproteobacteria
Pseudovibrio axinellae [FOFM]
283646
283722
+
Asp
GTC
[ENA]
¡û
>W1710550688
FOFM01000004
Alphaproteobacteria
Pseudovibrio axinellae [FOFM]
283782
283858
+
Asp
GTC
[ENA]
¡û
>W1710550689
FOFM01000004
Alphaproteobacteria
Pseudovibrio axinellae [FOFM]
283906
283982
+
Asp
GTC
[ENA]
¡û
>W1710550690
FOFM01000004
Alphaproteobacteria
Pseudovibrio axinellae [FOFM]
284029
284105
+
Asp
GTC
[ENA]
¡û
>W1710567034
FOSK01000008
Alphaproteobacteria
Pseudovibrio ascidiaceicola [FOSK]
226914
226990
+
Asp
GTC
[ENA]
¡û
>W1710567035
FOSK01000008
Alphaproteobacteria
Pseudovibrio ascidiaceicola [FOSK]
227005
227081
+
Asp
GTC
[ENA]
¡û
>W1710567036
FOSK01000008
Alphaproteobacteria
Pseudovibrio ascidiaceicola [FOSK]
227142
227218
+
Asp
GTC
[ENA]
¡û
>W1710567037
FOSK01000008
Alphaproteobacteria
Pseudovibrio ascidiaceicola [FOSK]
227279
227355
+
Asp
GTC
[ENA]
¡û
>W1710567038
FOSK01000008
Alphaproteobacteria
Pseudovibrio ascidiaceicola [FOSK]
227401
227477
+
Asp
GTC
[ENA]
¡û
>W1710643332
JSEP01000024
Alphaproteobacteria
Labrenzia sp. OB1 [JSEP]
47272
47348
+
Asp
GTC
[ENA]
¡û
>W1710643333
JSEP01000024
Alphaproteobacteria
Labrenzia sp. OB1 [JSEP]
47405
47481
+
Asp
GTC
[ENA]
¡û
>W1710704820
LCWX01000239
Alphaproteobacteria
Pseudovibrio sp. POLY-S9 [LCWX]
103621
103545
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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