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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.298558 (18 seq.)
>C171098246
CP019697
Betaproteobacteria
Paenalcaligenes hominis 15S00501 [CP019697]
2398666
2398590
-
Pro
TGG
-
¡û
>WENV180391124
OBPM01014874
[OBPM] marine metagenome; ENVO:00002010
551
475
-
Pro
TGG
[ENA]
¢þ
>WENV181384155
OFRH01025992
[OFRH] wastewater metagenome; Exp Tend NO 100WW
580
656
+
Pro
TGG
[ENA]
¢þ
>WENV181857519
OGWO01010230
[OGWO] freshwater metagenome; freshwater
149
225
+
Pro
TGG
[ENA]
¢þ
>WENV183727830
PJTP01000879
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
1385
1461
+
Pro
TGG
[ENA]
¢þ
>WENV170655523
JTFN01041120
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
311
235
-
Pro
TGG
[ENA]
¢þ
>WENV170656179
JTFO01003215
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
9297
9221
-
Pro
TGG
[ENA]
¢þ
>WENV170657359
JTFO01135043
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
431
507
+
Pro
TGG
[ENA]
¢þ
>WENV170691034
LFRM01376324
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
108
184
+
Pro
TGG
[ENA]
¢þ
>C181053258
CP021641
Betaproteobacteria
Alcaligenes faecalis JQ135 [CP021641]
931159
931083
-
Pro
TGG
-
¡û
>C191085294
CP032153
Betaproteobacteria
Alcaligenes aquatilis QD168 [CP032153]
1171979
1171903
-
Pro
TGG
-
¡û
>C191085295
CP032153
Betaproteobacteria
Alcaligenes aquatilis QD168 [CP032153]
1171691
1171615
-
Pro
TGG
-
¡û
>C191091167
CP032521
Betaproteobacteria
Alcaligenes faecalis J481 [CP032521]
3446712
3446636
-
Pro
TGG
-
¡û
>W1910888841
NESD01000004
Betaproteobacteria
Limnohabitans sp. Jir61 [NESD]
37904
37828
-
Pro
TGG
[ENA]
¡û
>W1910889268
NESO01000002
Betaproteobacteria
Limnohabitans sp. Rim8 [NESO]
255798
255722
-
Pro
TGG
[ENA]
¡û
>W1910889331
NESP01000001
Betaproteobacteria
Limnohabitans curvus MWH-C5 [NESP]
72179
72103
-
Pro
TGG
[ENA]
¡û
>W1810305827
PTQX01000002
Betaproteobacteria
Limnohabitans sp. TS-CS-82 [PTQX]
233774
233850
+
Pro
TGG
[ENA]
¡û
>WENV056988
AACY023278373
Marine microbial communities from Global Ocean Sampling (GOS)
176
98
-
Pro
TGG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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