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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301083 (88 seq.)
>A171003613
CP004144
Euryarchaeota
Methanosarcina mazei Tuc01 [CP004144]
247574
247501
-
His
GTG
-
¡û
>A171004378
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
1904465
1904392
-
His
GTG
-
¡û
>A171004509
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
60908
60981
+
His
GTG
-
¡û
>A171004609
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
845987
845914
-
His
GTG
-
¡û
>A171004797
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
3237302
3237229
-
His
GTG
-
¡û
>A171004850
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
3200235
3200162
-
His
GTG
-
¡û
>A171004907
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
3507845
3507772
-
His
GTG
-
¡û
>A171004936
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
1290315
1290388
+
His
GTG
-
¡û
>A171004988
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
1228601
1228674
+
His
GTG
-
¡û
>A171005040
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
1284825
1284898
+
His
GTG
-
¡û
>A171005091
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
1301976
1302049
+
His
GTG
-
¡û
>A171005154
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
2984453
2984526
+
His
GTG
-
¡û
>A171005250
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
1538120
1538193
+
His
GTG
-
¡û
>A171005331
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
3231587
3231514
-
His
GTG
-
¡û
>A171005398
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
1373593
1373666
+
His
GTG
-
¡û
>A171005453
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
1345155
1345228
+
His
GTG
-
¡û
>A171005592
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
3174492
3174419
-
His
GTG
-
¡û
>A171005641
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
3114871
3114798
-
His
GTG
-
¡û
>WENV180311589
OBJT01395251
[OBJT] soil metagenome; soil
86
159
+
His
GTG
[ENA]
¢þ
>WENV180345657
OBLN01001944
[OBLN] sediment metagenome; sediment
4528
4601
+
His
GTG
[ENA]
¢þ
>WENV170008109
AMZC01001876
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
2629
2704
+
His
GTG
[ENA]
¢þ
>At1420
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
3563933
3563861
-
His
GTG
[Ensembl]
¡û
>At1527
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
302611
302539
-
His
GTG
[Ensembl]
¡û
>WENV170686601
LFRM01153609
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
43907
43832
-
His
GTG
[ENA]
¢þ
>WENV170720399
LSQX01151826
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1961
1886
-
His
GTG
[ENA]
¢þ
>WENV170726282
LSQX01373848
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3540
3467
-
His
GTG
[ENA]
¢þ
>W1910230906
FPAO01000007
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
150063
150136
+
His
GTG
[ENA]
¡û
>W1910569266
JJOR01000158
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
9622
9695
+
His
GTG
[ENA]
¡û
>W1910569313
JJOS01000094
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
34714
34641
-
His
GTG
[ENA]
¡û
>W1910569376
JJOT01000132
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
18264
18337
+
His
GTG
[ENA]
¡û
>W1910569389
JJOU01000065
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
9688
9615
-
His
GTG
[ENA]
¡û
>W1910569709
JJPA01000154
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
4547
4620
+
His
GTG
[ENA]
¡û
>W1910569746
JJPB01000068
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
4011
3938
-
His
GTG
[ENA]
¡û
>W1910569802
JJPC01000036
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
66149
66222
+
His
GTG
[ENA]
¡û
>W1910569841
JJPD01000015
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
6743
6816
+
His
GTG
[ENA]
¡û
>W1910569891
JJPE01000007
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
7215
7288
+
His
GTG
[ENA]
¡û
>W1910569985
JJPF01000139
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
84221
84294
+
His
GTG
[ENA]
¡û
>W1910570016
JJPG01000092
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
84055
84128
+
His
GTG
[ENA]
¡û
>W1910570063
JJPH01000053
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
7215
7288
+
His
GTG
[ENA]
¡û
>W1910570124
JJPI01000080
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
64615
64542
-
His
GTG
[ENA]
¡û
>W1910570143
JJPJ01000008
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
8674
8747
+
His
GTG
[ENA]
¡û
>W1910570227
JJPK01000091
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
48057
48130
+
His
GTG
[ENA]
¡û
>W1910570263
JJPL01000080
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
7215
7288
+
His
GTG
[ENA]
¡û
>W1910570307
JJPM01000087
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
6746
6819
+
His
GTG
[ENA]
¡û
>W1910570350
JJPN01000010
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
47442
47515
+
His
GTG
[ENA]
¡û
>W1910570417
JJPO01000082
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
47987
48060
+
His
GTG
[ENA]
¡û
>W1910570455
JJPP01000032
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
9479
9552
+
His
GTG
[ENA]
¡û
>W1910570498
JJPQ01000002
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
2541
2468
-
His
GTG
[ENA]
¡û
>W1910570579
JJPR01000097
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
8209
8282
+
His
GTG
[ENA]
¡û
>W1910570645
JJPS01000215
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
5985
5912
-
His
GTG
[ENA]
¡û
>W1910570654
JJPT01000024
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
59515
59442
-
His
GTG
[ENA]
¡û
>W1910570722
JJPU01000108
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
8708
8781
+
His
GTG
[ENA]
¡û
>W1910570768
JJPV01000036
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
164807
164880
+
His
GTG
[ENA]
¡û
>W1910570824
JJPW01000048
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
47622
47695
+
His
GTG
[ENA]
¡û
>W1910570899
JJPX01000186
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
6744
6817
+
His
GTG
[ENA]
¡û
>W1910570945
JJPY01000110
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
47484
47557
+
His
GTG
[ENA]
¡û
>W1910570960
JJPZ01000026
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
47461
47534
+
His
GTG
[ENA]
¡û
>W1910571028
JJQA01000085
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
58647
58574
-
His
GTG
[ENA]
¡û
>W1910571054
JJQB01000011
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
36913
36840
-
His
GTG
[ENA]
¡û
>W1910571113
JJQC01000042
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
60288
60215
-
His
GTG
[ENA]
¡û
>W1910571176
JJQD01000103
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
2862
2935
+
His
GTG
[ENA]
¡û
>W1910571229
JJQE01000135
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
7215
7288
+
His
GTG
[ENA]
¡û
>W1910571275
JJQF01000053
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
30337
30264
-
His
GTG
[ENA]
¡û
>W1910571348
JJQG01000148
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
47845
47918
+
His
GTG
[ENA]
¡û
>W1910571382
JJQH01000113
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
70855
70782
-
His
GTG
[ENA]
¡û
>W1910571422
JJQI01000031
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
16950
16877
-
His
GTG
[ENA]
¡û
>W1910571466
JJQJ01000074
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
9513
9586
+
His
GTG
[ENA]
¡û
>W1910571525
JJQK01000063
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
4077
4004
-
His
GTG
[ENA]
¡û
>W1910571655
JJQM01000097
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
48119
48192
+
His
GTG
[ENA]
¡û
>W1910571707
JJQN01000100
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
8182
8255
+
His
GTG
[ENA]
¡û
>W1910571752
JJQO01000083
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
40538
40611
+
His
GTG
[ENA]
¡û
>W1910571818
JJQP01000149
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
9479
9552
+
His
GTG
[ENA]
¡û
>W1910571861
JJQQ01000039
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
9656
9729
+
His
GTG
[ENA]
¡û
>W1910571946
JJQR01000151
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
40504
40577
+
His
GTG
[ENA]
¡û
>W1910571958
JJQS01000027
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
9479
9552
+
His
GTG
[ENA]
¡û
>W1910572009
JJQT01000030
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
9513
9586
+
His
GTG
[ENA]
¡û
>W1910572092
JJQU01000169
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
9479
9552
+
His
GTG
[ENA]
¡û
>W1910572112
JJQV01000031
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
144741
144814
+
His
GTG
[ENA]
¡û
>W1910572155
JJQW01000011
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
48098
48171
+
His
GTG
[ENA]
¡û
>W1910572225
JJQX01000131
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
9452
9525
+
His
GTG
[ENA]
¡û
>W1910572337
JJQZ01000126
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
72118
72045
-
His
GTG
[ENA]
¡û
>W1910572380
JJRA01000097
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
9616
9689
+
His
GTG
[ENA]
¡û
>W1910572435
JJRB01000119
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
56713
56786
+
His
GTG
[ENA]
¡û
>W1910575064
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
3684302
3684229
-
His
GTG
[ENA]
¡û
>W1910635283
LMVP01000555
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
15972
15899
-
His
GTG
[ENA]
¡û
>W1910655405
LZPK01000344
Euryarchaeota
Methanosarcina sp. A14 [LZPK]
5872
5799
-
His
GTG
[ENA]
¡û
>W1610605104
LFRP01000018
Euryarchaeota
Methanosarcina sp. DTU009 [LFRP]
43907
43832
-
Pseudo
GTG
[ENA]
¡û
>W1610670238
LKAZ01000027
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
22925
22850
-
Pseudo
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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