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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301138 (31 seq.)
>W1710785423
LJHV01000014
Alphaproteobacteria
Porphyrobacter sp. AAP60 [LJHV]
22222
22146
-
Ile
GAT
[ENA]
¡û
>W1711284900
LZRP01000012
Alphaproteobacteria
Erythrobacter sp. QSSC1-22B [LZRP]
13084
13008
-
Ile
GAT
[ENA]
¡û
>PL171001291
CP017076
Alphaproteobacteria
Novosphingobium resinovorum SA1 plasmid:pSA1
1468818
1468894
+
Ile
GAT
[ENA]
¡û
>PL171001294
CP017076
Alphaproteobacteria
Novosphingobium resinovorum SA1 plasmid:pSA1
952103
952027
-
Ile
GAT
[ENA]
¡û
>C171056577
CP017075
Alphaproteobacteria
Novosphingobium resinovorum SA1 [CP017075]
3124004
3124080
+
Ile
GAT
-
¡û
>WENV180082429
MPMC02222099
[MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter
219
295
+
Ile
GAT
[ENA]
¢þ
>WENV170714373
LNFM01070085
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1298
1374
+
Ile
GAT
[ENA]
¢þ
>W141484941
JFYZ01000008
Alphaproteobacteria
Novosphingobium resinovorum [JFYZ]
184
108
-
Ile
GAT
[ENA]
¡û
>C181192033
CP030352
Alphaproteobacteria
Novosphingobium sp. P6W [CP030352, CP030353]
1171535
1171611
+
Ile
GAT
-
¡û
>C181192076
CP030352
Alphaproteobacteria
Novosphingobium sp. P6W [CP030352, CP030353]
34116
34040
-
Ile
GAT
-
¡û
>C181192079
CP030353
Alphaproteobacteria
Novosphingobium sp. P6W [CP030352, CP030353]
1438937
1438861
-
Ile
GAT
-
¡û
>C181192082
CP030353
Alphaproteobacteria
Novosphingobium sp. P6W [CP030352, CP030353]
1258683
1258607
-
Ile
GAT
-
¡û
>C181192085
CP030353
Alphaproteobacteria
Novosphingobium sp. P6W [CP030352, CP030353]
536502
536426
-
Ile
GAT
-
¡û
>W1911798293
QYOS01000024
Alphaproteobacteria
Aurantiacibacter odishensis KCTC 23981 [QYOS]
212428
212504
+
Ile
GAT
[ENA]
¡û
>W1810195485
PKRO01000072
Alphaproteobacteria
Porphyrobacter sp. TH134 [PKRO]
3727
3651
-
Ile
GAT
[ENA]
¡û
>W1810779205
QQNB01000008
Alphaproteobacteria
Sphingomonas aracearum WZY 27 [QQNB]
3762
3686
-
Ile
GAT
[ENA]
¡û
>SRA1016381
SRR023846.472863
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
151
227
+
Ile
GAT
[SRA]
>W1510012872
BBNP01000097
Alphaproteobacteria
Novosphingobium sp. MBES04 [BBNP]
1685
1761
+
Ile
GAT
[ENA]
¡û
>W1510757037
JACU01000005
Alphaproteobacteria
Novosphingobium barchaimii LL02 [JACU]
3851
3775
-
Ile
GAT
[ENA]
¡û
>W1510757047
JACU01000008
Alphaproteobacteria
Novosphingobium barchaimii LL02 [JACU]
449762
449838
+
Ile
GAT
[ENA]
¡û
>W1510757054
JACU01000018
Alphaproteobacteria
Novosphingobium barchaimii LL02 [JACU]
107949
108025
+
Ile
GAT
[ENA]
¡û
>W1510757055
JACU01000018
Alphaproteobacteria
Novosphingobium barchaimii LL02 [JACU]
80
4
-
Ile
GAT
[ENA]
¡û
>W1511398332
JTDN01000001
Alphaproteobacteria
Croceibacterium mercuriale Coronado [JTDN]
2009
2085
+
Ile
GAT
[ENA]
¡û
>WENV043458
AACY022325127
Marine microbial communities from Global Ocean Sampling (GOS)
535
613
+
Ile
GAT
[ENA]
>W1511519419
JXZE01000007
Alphaproteobacteria
Novosphingobium sp. P6W [JXZE]
176571
176647
+
Ile
GAT
[ENA]
¡û
>W1511519422
JXZE01000008
Alphaproteobacteria
Novosphingobium sp. P6W [JXZE]
9329
9253
-
Ile
GAT
[ENA]
¡û
>C161093698
CP016033
Alphaproteobacteria
Erythrobacter neustonensis DSM 9434 [CP016033]
465448
465372
-
Ile
GAT
[Ensembl]
¡û
>C161093704
CP016033
Alphaproteobacteria
Erythrobacter neustonensis DSM 9434 [CP016033]
196197
196121
-
Ile
GAT
[Ensembl]
¡û
>W121119222
ALVC01000093
Alphaproteobacteria
Sphingomonas sp. LH128 [ALVC]
1776
1852
+
Ile
GAT
[ENA]
¡û
>W1610649229
LJHV01000014
Alphaproteobacteria
Porphyrobacter sp. AAP60 [LJHV]
22222
22146
-
Ile
GAT
[ENA]
¡û
>W1611042685
LZRP01000012
Alphaproteobacteria
Erythrobacter sp. QSSC1-22B [LZRP]
13084
13008
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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