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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.303829 (20 seq.)
>C171101477
CP019948
Alphaproteobacteria
Methylocystis bryophila S285 [CP019948]
2858941
2859017
+
Asp
GTC
-
¡û
>W131166834
ARCT01000002
Alphaproteobacteria
Methylocystis rosea SV97 [ARCT]
1363236
1363312
+
Asp
GTC
[ENA]
¡û
>W08008832
ABLP01000001
Alphaproteobacteria
Methylocella silvestris BL2 [ABLP]
96915
96842
-
Asp
GTC
[ENA]
¡û
>W141188902
AYNA01000084
Alphaproteobacteria
Methylocystis sp. SB2 [AYNA]
5723
5799
+
Asp
GTC
[ENA]
¡û
>WENV183669250
ORJL010822064
[ORJL] groundwater metagenome; groundwater
580
504
-
Asp
GTC
[ENA]
¢þ
>WENV183675943
ORJL011571365
[ORJL] groundwater metagenome; groundwater
5170
5246
+
Asp
GTC
[ENA]
¢þ
>WENV170004111
AGTN01563449
[AGTN] bioreactor metagenome; poplar biomass
213
137
-
Asp
GTC
[ENA]
¢þ
>WENV170714427
LNFM01073002
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1101
1177
+
Asp
GTC
[ENA]
¢þ
>C191028892
CP024846
Alphaproteobacteria
Beijerinckiaceae bacterium MG08 [CP024846]
590439
590363
-
Asp
GTC
-
¡û
>C191118894
CP034086
Alphaproteobacteria
Methylocystis rosea GW6 [CP034086]
2205277
2205353
+
Asp
GTC
-
¡û
>C191220348
LR536450
Alphaproteobacteria
Methylocella tundrae [LR536450]
2210401
2210325
-
Asp
GTC
-
¡û
>C09107902
CP001280
Alphaproteobacteria
Methylocella silvestris BL2 [CP001280]
3216176
3216252
+
Asp
GTC
[Ensembl]
¡û
>W1910914014
NHSJ01000107
Alphaproteobacteria
Rhodoblastus sphagnicola DSM 16996 [NHSJ]
50318
50242
-
Asp
GTC
[ENA]
¡û
>W1911747261
QWDD01000001
Alphaproteobacteria
Methylocystis hirsuta CSC1 [QWDD]
1642589
1642513
-
Asp
GTC
[ENA]
¡û
>W1810068790
PDZR01000007
Alphaproteobacteria
Methylocella silvestris TVC [PDZR]
137684
137760
+
Asp
GTC
[ENA]
¡û
>SRA1005384
SRR006907.230203
metagenomic water samples (SRP000427)
90
14
-
Asp
GTC
[SRA]
>SRA1005407
SRR006907.253475
metagenomic water samples (SRP000427)
91
15
-
Asp
GTC
[SRA]
>W1810397225
PYDU01000051
Alphaproteobacteria
Methylocystis sp. MitZ-2018 [PYDU]
5758
5834
+
Asp
GTC
[ENA]
¡û
>W1810720676
QNRK01000023
Alphaproteobacteria
Roseiarcus fermentans DSM 24875 [QNRK]
54764
54840
+
Asp
GTC
[ENA]
¡û
>C131019930
HE956757
Alphaproteobacteria
Methylocystis sp. SC2 [HE956757]
3448219
3448143
-
Asp
GTC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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