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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.337593 (47 seq.)
>W1711411354
MGTA01000021
Unclassified
Deltaproteobacteria bacterium RIFOXYD12_FULL_50_9 [MGTA]
14219
14294
+
Val
TAC
[ENA]
¡û
>W1711411517
MGTE01000062
Unclassified
Deltaproteobacteria bacterium RIFOXYD12_FULL_57_12 [MGTE]
28243
28318
+
Val
TAC
[ENA]
¡û
>C007519
CP000112
Thermodesulfobacteriota
Oleidesulfovibrio alaskensis G20 [CP000112]
677828
677903
+
Val
TAC
[Ensembl]
¡û
>WENV180316868
OBKJ01000460
[OBKJ] metagenome; hydrothermal vent
666
591
-
Val
TAC
[ENA]
¢þ
>WENV180371651
OBOI01006885
[OBOI] sediment metagenome; sediment
1869
1944
+
Val
TAC
[ENA]
¢þ
>WENV180581728
OCMK01055499
[OCMK] metagenome; diffuse fluid
47
122
+
Val
TAC
[ENA]
¢þ
>WENV180582197
OCMO01009406
[OCMO] metagenome; diffuse fluid
121
46
-
Val
TAC
[ENA]
¢þ
>WENV181207099
OFAY01000550
[OFAY] metagenome; hydrothermal vent
285
210
-
Val
TAC
[ENA]
¢þ
>WENV181207883
OFBA01001869
[OFBA] metagenome; hydrothermal vent
285
210
-
Val
TAC
[ENA]
¢þ
>WENV181208201
OFBB01000428
[OFBB] metagenome; hydrothermal vent
4096
4021
-
Val
TAC
[ENA]
¢þ
>WENV181208655
OFBC01001058
[OFBC] metagenome; hydrothermal vent
1167
1092
-
Val
TAC
[ENA]
¢þ
>WENV181224211
OFDE01000989
[OFDE] metagenome; hydrothermal vent
1515
1590
+
Val
TAC
[ENA]
¢þ
>WENV181224692
OFDG01001358
[OFDG] metagenome; hydrothermal vent
704
629
-
Val
TAC
[ENA]
¢þ
>WENV181225422
OFDI01001225
[OFDI] metagenome; hydrothermal vent
1062
987
-
Val
TAC
[ENA]
¢þ
>W141169791
AXWQ01000007
Thermodesulfobacteriota
Oleidesulfovibrio alaskensis DSM 16109 [AXWQ]
331040
331115
+
Val
TAC
[ENA]
¡û
>WENV181842716
OGVT01014476
[OGVT] freshwater metagenome; freshwater
124
49
-
Val
TAC
[ENA]
¢þ
>W141277853
JAEX01000002
Thermodesulfobacteriota
Desulfocurvus vexinensis DSM 17965 [JAEX]
110965
111040
+
Val
TAC
[ENA]
¡û
>WENV183705417
PDWI01001522
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
45859
45784
-
Val
TAC
[ENA]
¢þ
>WENV183706010
PDWI01002914
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
98
23
-
Val
TAC
[ENA]
¢þ
>WENV183708616
PDWI01018026
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
99
24
-
Val
TAC
[ENA]
¢þ
>WENV183709121
PDWI01024103
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
5709
5784
+
Val
TAC
[ENA]
¢þ
>WENV183715510
PDWI01244579
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
99
24
-
Val
TAC
[ENA]
¢þ
>WENV183716871
PDWJ01000233
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
4995
5070
+
Val
TAC
[ENA]
¢þ
>WENV183718763
PDWJ01006422
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1797
1872
+
Val
TAC
[ENA]
¢þ
>WENV183720670
PDWJ01041167
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2319
2394
+
Val
TAC
[ENA]
¢þ
>WENV183721600
PDWJ01076947
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
228
153
-
Val
TAC
[ENA]
¢þ
>WENV183722010
PDWJ01099827
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1203
1278
+
Val
TAC
[ENA]
¢þ
>WENV170007801
AMWB02158523
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
55503
55578
+
Val
TAC
[ENA]
¢þ
>WENV170612186
FUWD012527490
[FUWD] metagenome; unknown
210
285
+
Val
TAC
[ENA]
¢þ
>WENV170642164
JFJP01039360
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
3815
3740
-
Val
TAC
[ENA]
¢þ
>WENV170655921
JTFN01095778
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
86
11
-
Val
TAC
[ENA]
¢þ
>WENV170656783
JTFO01043329
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
235
310
+
Val
TAC
[ENA]
¢þ
>WENV170660581
JXWT01144387
[JXWT] soil metagenome; rice field; elevated CO2 plus elevated temperature
199
124
-
Val
TAC
[ENA]
¢þ
>WENV170691568
LFRM01403103
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
517
442
-
Val
TAC
[ENA]
¢þ
>W09100689
AABN02000005
Thermodesulfobacteriota
Oleidesulfovibrio alaskensis G20 [AABN]
232704
232629
-
Val
TAC
[ENA]
¡û
>W09108766
ABTO01000019
Thermodesulfobacteriota
Desulfohalobium retbaense DSM 5692 [ABTO]
47283
47208
-
Val
TAC
[ENA]
¡û
>C191000269
AP017378
Thermodesulfobacteriota
Desulfovibrio ferrophilus IS5 [AP017378]
1550452
1550377
-
Val
TAC
-
¡û
>W141701593
JMKT01000012
Thermodesulfobacteriota
Desulfonatronovibrio hydrogenovorans DSM 9292 [JMKT]
175333
175258
-
Val
TAC
[ENA]
¡û
>SRA1033260
SRR035088.209728
454 Sequencing (SRP001809)
210
285
+
Val
TAC
[SRA]
>SRA1038533
SRR035090.322459
454 Sequencing (SRP001811)
110
185
+
Val
TAC
[SRA]
>SRA1049085
SRR035095.17175
454 Sequencing (SRP001816)
54
129
+
Val
TAC
[SRA]
>C10105395
CP001734
Thermodesulfobacteriota
Desulfohalobium retbaense DSM 5692 [CP001734]
2132544
2132619
+
Val
TAC
[Ensembl]
¡û
>C161069063
CP014230
Thermodesulfobacteriota
Desulfomicrobium orale DSM 12838 [CP014230]
357276
357201
-
Val
TAC
[Ensembl]
¡û
>W1610082355
BDFE01000017
Thermodesulfobacteriota
Desulfoplanes formicivorans [BDFE]
261541
261616
+
Val
TAC
[ENA]
¡û
>C131010882
CP003985
Thermodesulfobacteriota
Desulfocapsa sulfexigens DSM 10523 [CP003985]
3090200
3090275
+
Val
TAC
[Ensembl]
¡û
>WENV078110
AAFY01022051
Fossil microbial community from Whale Fall (Santa Cruz Basin)
689
614
-
Val
TAC
[ENA]
>W1710081355
BDFE01000017
Thermodesulfobacteriota
Desulfoplanes formicivorans [BDFE]
261541
261616
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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