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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338524 (67 seq.)
>W1711075392
LSKJ01000444
Alphaproteobacteria
Rhodospirillaceae bacterium CCH5-H10 [LSKJ]
56
130
+
Val
CAC
[ENA]
¡û
>W1711386262
MEFC01000035
Alphaproteobacteria
Rhodospirillales bacterium SCN 65-16 [MEFC]
6243
6317
+
Val
CAC
[ENA]
¡û
>W131109441
APHV01000115
Alphaproteobacteria
Azospirillum brasilense FP2 [APHV]
55246
55320
+
Val
CAC
[ENA]
¡û
>W131109442
APHV01000115
Alphaproteobacteria
Azospirillum brasilense FP2 [APHV]
55453
55527
+
Val
CAC
[ENA]
¡û
>WENV180034110
FTKM01680085
[FTKM] metagenome; soil
162895
162967
+
Val
CAC
[ENA]
¢þ
>WENV180258837
OBEQ011047403
[OBEQ] groundwater metagenome; groundwater
186
260
+
Val
CAC
[ENA]
¢þ
>WENV180265161
OBEQ011636185
[OBEQ] groundwater metagenome; groundwater
1319
1245
-
Val
CAC
[ENA]
¢þ
>WENV180265565
OBEQ011670450
[OBEQ] groundwater metagenome; groundwater
429
355
-
Val
CAC
[ENA]
¢þ
>WENV180343343
OBLK01005316
[OBLK] soil metagenome; Clay
897
971
+
Val
CAC
[ENA]
¢þ
>WENV180344610
OBLL01064166
[OBLL] soil metagenome; soil
136
210
+
Val
CAC
[ENA]
¢þ
>WENV180690295
OCZS010002218
[OCZS] soil metagenome; soil
2324
2250
-
Val
CAC
[ENA]
¢þ
>W141244515
CAKO01000006
Alphaproteobacteria
Reyranella massiliensis 521 [CAKO]
1131
1057
-
Val
CAC
[ENA]
¡û
>WENV183668083
ORJL010710072
[ORJL] groundwater metagenome; groundwater
2554
2628
+
Val
CAC
[ENA]
¢þ
>WENV183672151
ORJL011140866
[ORJL] groundwater metagenome; groundwater
25822
25748
-
Val
CAC
[ENA]
¢þ
>WENV183678692
ORJL011912095
[ORJL] groundwater metagenome; groundwater
1002
1076
+
Val
CAC
[ENA]
¢þ
>WENV183727359
PJTO01033798
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
282
356
+
Val
CAC
[ENA]
¢þ
>WENV170707616
LNAP01027412
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
895
969
+
Val
CAC
[ENA]
¢þ
>WENV170710719
LNFM01002467
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
10520
10594
+
Val
CAC
[ENA]
¢þ
>WENV170710741
LNFM01002526
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
11553
11627
+
Val
CAC
[ENA]
¢þ
>WENV170710798
LNFM01002674
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
12623
12549
-
Val
CAC
[ENA]
¢þ
>WENV170712086
LNFM01009710
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
11022
10948
-
Val
CAC
[ENA]
¢þ
>WENV170712886
LNFM01019540
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2770
2696
-
Val
CAC
[ENA]
¢þ
>WENV170713353
LNFM01029180
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
19
93
+
Val
CAC
[ENA]
¢þ
>WENV170713623
LNFM01036391
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3962
3888
-
Val
CAC
[ENA]
¢þ
>C181063150
CP022364
Alphaproteobacteria
Azospirillum sp. TSH58 [CP022364]
2866162
2866236
+
Val
CAC
-
¡û
>C181063151
CP022364
Alphaproteobacteria
Azospirillum sp. TSH58 [CP022364]
2866369
2866443
+
Val
CAC
-
¡û
>W141520249
JGVN01000001
Alphaproteobacteria
Azospirillum argentinense brasilense [JGVN]
1475982
1476056
+
Val
CAC
[ENA]
¡û
>W141520250
JGVN01000001
Alphaproteobacteria
Azospirillum argentinense brasilense [JGVN]
1476189
1476263
+
Val
CAC
[ENA]
¡û
>C191087931
CP032321
Alphaproteobacteria
Azospirillum argentinense MTCC4035 [CP032321]
738280
738206
-
Val
CAC
-
¡û
>C191087932
CP032321
Alphaproteobacteria
Azospirillum argentinense MTCC4035 [CP032321]
738073
737999
-
Val
CAC
-
¡û
>C191088051
CP032339
Alphaproteobacteria
Azospirillum brasilense MTCC4038 [CP032339]
584315
584241
-
Val
CAC
-
¡û
>C191088052
CP032339
Alphaproteobacteria
Azospirillum brasilense MTCC4038 [CP032339]
584108
584034
-
Val
CAC
-
¡û
>C191088097
CP032345
Alphaproteobacteria
Azospirillum brasilense MTCC4039 [CP032345]
396177
396103
-
Val
CAC
-
¡û
>C191088098
CP032345
Alphaproteobacteria
Azospirillum brasilense MTCC4039 [CP032345]
395970
395896
-
Val
CAC
-
¡û
>W1910613029
LGQV01000014
Alphaproteobacteria
Azospirillum sp. TSH58 [LGQV]
80013
79939
-
Val
CAC
[ENA]
¡û
>W1910613041
LGQV01000034
Alphaproteobacteria
Azospirillum sp. TSH58 [LGQV]
149213
149287
+
Val
CAC
[ENA]
¡û
>W1910613304
LGQZ01000146
Alphaproteobacteria
Azospirillum sp. TSO22-1 [LGQZ]
718
644
-
Val
CAC
[ENA]
¡û
>W1910698369
MEMN01000207
Alphaproteobacteria
Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_66_14 [MEMN]
11483
11409
-
Val
CAC
[ENA]
¡û
>W1911138078
NOWT01000003
Alphaproteobacteria
Azospirillum brasilense 2A1 [NOWT]
282333
282259
-
Val
CAC
[ENA]
¡û
>W1911138079
NOWT01000003
Alphaproteobacteria
Azospirillum brasilense 2A1 [NOWT]
282126
282052
-
Val
CAC
[ENA]
¡û
>W1911497393
OCNJ01000006
Alphaproteobacteria
Caenispirillum bisanense USBA 140 [OCNJ]
142518
142592
+
Val
CAC
[ENA]
¡û
>W1911702297
QOCQ01000007
Alphaproteobacteria
Rhodospirillaceae bacterium SYSU D60007 [QOCQ]
200667
200741
+
Val
CAC
[ENA]
¡û
>W1911768774
QXHE01000035
Alphaproteobacteria
Azospirillum brasilense SR80 [QXHE]
19271
19197
-
Val
CAC
[ENA]
¡û
>W1911768775
QXHE01000035
Alphaproteobacteria
Azospirillum brasilense SR80 [QXHE]
19064
18990
-
Val
CAC
[ENA]
¡û
>W1810222276
POQV01000015
Alphaproteobacteria
Azospirillum brasilense Ab-V5 [POQV]
32268
32194
-
Val
CAC
[ENA]
¡û
>W1810222277
POQV01000015
Alphaproteobacteria
Azospirillum brasilense Ab-V5 [POQV]
32061
31987
-
Val
CAC
[ENA]
¡û
>W1810223561
POTD01000016
Alphaproteobacteria
Azospirillum brasilense Ab-V6 [POTD]
32268
32194
-
Val
CAC
[ENA]
¡û
>W1810223562
POTD01000016
Alphaproteobacteria
Azospirillum brasilense Ab-V6 [POTD]
32061
31987
-
Val
CAC
[ENA]
¡û
>W1810226064
POWG01000001
Alphaproteobacteria
Azospirillum argentinense REC3 [POWG]
180260
180334
+
Val
CAC
[ENA]
¡û
>W1810226065
POWG01000001
Alphaproteobacteria
Azospirillum argentinense REC3 [POWG]
180467
180541
+
Val
CAC
[ENA]
¡û
>W1810692547
QLKQ01000002
Alphaproteobacteria
Azospirillum brasilense HAMBI_3172 [QLKQ]
133064
132990
-
Val
CAC
[ENA]
¡û
>W1810692548
QLKQ01000002
Alphaproteobacteria
Azospirillum brasilense HAMBI_3172 [QLKQ]
132858
132784
-
Val
CAC
[ENA]
¡û
>C151034750
CP007793
Alphaproteobacteria
Azospirillum argentinense Az39 [CP007793]
1165208
1165282
+
Val
CAC
[Ensembl]
¡û
>C151034751
CP007793
Alphaproteobacteria
Azospirillum argentinense Az39 [CP007793]
1165415
1165489
+
Val
CAC
[Ensembl]
¡û
>C121017707
HE577327
Alphaproteobacteria
Azospirillum baldaniorum Sp245 [HE577327]
2033754
2033828
+
Val
CAC
[Ensembl]
¡û
>C121017708
HE577327
Alphaproteobacteria
Azospirillum baldaniorum Sp245 [HE577327]
2033961
2034035
+
Val
CAC
[Ensembl]
¡û
>C161047384
CP012914
Alphaproteobacteria
Azospirillum brasilense Sp 7 [CP012914]
1868952
1868878
-
Val
CAC
[Ensembl]
¡û
>C161047385
CP012914
Alphaproteobacteria
Azospirillum brasilense Sp 7 [CP012914]
1868745
1868671
-
Val
CAC
[Ensembl]
¡û
>W1610026869
AVFK01000002
Alphaproteobacteria
Skermanella aerolata KACC 11604 [AVFK]
136227
136153
-
Val
CAC
[ENA]
¡û
>W1610914697
LSKJ01000444
Alphaproteobacteria
Rhodospirillaceae bacterium CCH5-H10 [LSKJ]
56
130
+
Val
CAC
[ENA]
¡û
>W1710023034
AVFK01000002
Alphaproteobacteria
Skermanella aerolata KACC 11604 [AVFK]
136227
136153
-
Val
CAC
[ENA]
¡û
>W1710548243
FODP01000021
Alphaproteobacteria
Rhodospirillales bacterium URHD0017 [FODP]
116969
116895
-
Val
CAC
[ENA]
¡û
>W1710574046
FOXZ01000001
Alphaproteobacteria
Nitratireductor indicus [FOXZ]
662904
662830
-
Val
CAC
[ENA]
¡û
>W1710626675
JPIR01000017
Alphaproteobacteria
Azospirillum brasilense [JPIR]
137137
137063
-
Val
CAC
[ENA]
¡û
>W1710626676
JPIR01000017
Alphaproteobacteria
Azospirillum brasilense [JPIR]
136930
136856
-
Val
CAC
[ENA]
¡û
>W1710626736
JPIS01000013
Alphaproteobacteria
Azospirillum brasilense [JPIS]
137252
137178
-
Val
CAC
[ENA]
¡û
>W1710626737
JPIS01000013
Alphaproteobacteria
Azospirillum brasilense [JPIS]
137045
136971
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK