This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339817 (65 seq.)
>A171001585
CP002062
Euryarchaeota
Halalkalicoccus jeotgali B3 [CP002062]
2794600
2794528
-
Ala
CGC
-
¡û
>A171002717
CP003050
Euryarchaeota
Halovivax ruber XH-70 [CP003050]
2437217
2437146
-
Ala
CGC
-
¡û
>A171003038
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
658876
658947
+
Ala
CGC
-
¡û
>A171003494
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
2046910
2046838
-
Ala
CGC
-
¡û
>A171003747
CP005962
Euryarchaeota
Salinarchaeum sp. Harcht-Bsk1 [CP005962]
2151269
2151197
-
Ala
CGC
-
¡û
>A171004149
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
2376356
2376285
-
Ala
CGC
-
¡û
>A171004392
CP008874
Euryarchaeota
Halanaeroarchaeum sulfurireducens HSR2 [CP008874]
326428
326499
+
Ala
CGC
-
¡û
>A171006150
CP011564
Euryarchaeota
Halanaeroarchaeum sulfurireducens M27-SA2 [CP011564]
326221
326292
+
Ala
CGC
-
¡û
>A171007008
CP019893
Euryarchaeota
Natrarchaeobaculum aegyptiacum JW/NM-HA 15 [CP019893]
3700413
3700484
+
Ala
CGC
-
¡û
>A171007431
LN831302
Euryarchaeota
Halobacterium hubeiense JI20-1 [LN831302]
263253
263325
+
Ala
CGC
-
¡û
>WENV180318265
OBKM01000229
[OBKM] metagenome; water
26223
26295
+
Ala
CGC
[ENA]
¢þ
>At0816
AE004437
Euryarchaeota
Halobacterium salinarum NRC-1; ATCC 700922 [AE004437]
1926731
1926802
+
Ala
CGC
[Ensembl]
¡û
>At0839
AE004437
Euryarchaeota
Halobacterium salinarum NRC-1; ATCC 700922 [AE004437]
1984312
1984241
-
Ala
CGC
[Ensembl]
¡û
>WENV170680178
LFCJ01005234
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
2189
2260
+
Ala
CGC
[ENA]
¢þ
>WENV170680340
LFCJ01008992
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
7019
6948
-
Ala
CGC
[ENA]
¢þ
>WENV170680354
LFCJ01009601
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
4641
4567
-
Ala
CGC
[ENA]
¢þ
>WENV170681621
LFFM01001693
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
799
728
-
Ala
CGC
[ENA]
¢þ
>WENV170703770
LKMJ01016542
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
5749
5820
+
Ala
CGC
[ENA]
¢þ
>W1910006648
BBJN01000009
Euryarchaeota
Halolamina rubra CBA1107 [BBJN]
10647
10575
-
Ala
CGC
[ENA]
¡û
>W1910193809
CVUA01000001
Euryarchaeota
Halolamina sediminis halo-7 halo7 [CVUA]
561571
561499
-
Ala
CGC
[ENA]
¡û
>W1910226895
FNFE01000001
Euryarchaeota
Natronorubrum texcoconense B4,CECT 8067,JCM 17497 [FNFE]
280925
280997
+
Ala
CGC
[ENA]
¡û
>W1910227055
FNIA01000011
Euryarchaeota
Haloarchaeobius iranensis EB21,IBRC-M 10013,KCTC 4048 [FNIA]
992
921
-
Ala
CGC
[ENA]
¡û
>W1910228593
FNVN01000001
Euryarchaeota
Halobellus limi CGMCC 1.10331 [FNVN]
1074117
1074045
-
Ala
CGC
[ENA]
¡û
>W1910229592
FNYR01000037
Euryarchaeota
Halohasta litchfieldiae DSM 22187 [FNYR]
14008
13937
-
Ala
CGC
[ENA]
¡û
>W1910229707
FOCX01000016
Euryarchaeota
Halorientalis persicus IBRC-M 10043 [FOCX]
83888
83959
+
Ala
CGC
[ENA]
¡û
>W1910230013
FOJA01000001
Euryarchaeota
Halobacterium jilantaiense CGMCC 1.5337 [FOJA]
1462735
1462806
+
Ala
CGC
[ENA]
¡û
>W1910230034
FOJA01000001
Euryarchaeota
Halobacterium jilantaiense CGMCC 1.5337 [FOJA]
1551115
1551043
-
Ala
CGC
[ENA]
¡û
>W1910230337
FOOQ01000001
Euryarchaeota
Halopelagius inordinatus CGMCC 1.7739 [FOOQ]
313673
313744
+
Ala
CGC
[ENA]
¡û
>W1910230622
FOXI01000005
Euryarchaeota
Halolamina pelagica CGMCC 1.10329 [FOXI]
105289
105217
-
Ala
CGC
[ENA]
¡û
>W1910230827
FOZS01000001
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
525904
525975
+
Ala
CGC
[ENA]
¡û
>W1910281620
FQWV01000001
Euryarchaeota
Halobaculum gomorrense DSM 9297 [FQWV]
291855
291783
-
Ala
CGC
[ENA]
¡û
>W1910568513
JDTG01000014
Euryarchaeota
Natrinema thermotolerans A29 [JDTG]
392186
392257
+
Ala
CGC
[ENA]
¡û
>W1910569077
JHUT02000007
Euryarchaeota
Natrinema mahii H13 [JHUT]
150809
150881
+
Ala
CGC
[ENA]
¡û
>W1910572570
JMIP02000017
Euryarchaeota
Halostagnicola sp. A56 [JMIP]
303021
302949
-
Ala
CGC
[ENA]
¡û
>W1910826103
MWPH01000002
Euryarchaeota
Natronolimnobius baerhuensis CGMCC 1.3597 [MWPH]
784622
784550
-
Ala
CGC
[ENA]
¡û
>W1910828019
MWUK01000003
Euryarchaeota
Halolamina sp. CBA1230 [MWUK]
2511975
2512046
+
Ala
CGC
[ENA]
¡û
>W1911696734
QMIM01000019
Euryarchaeota
Halorubrum sp. 48-1-W [QMIM]
79394
79323
-
Ala
CGC
[ENA]
¡û
>C151003941
CP002988
Euryarchaeota
halophilic archaeon DL31 [CP002988]
205032
204960
-
Ala
CGC
[Ensembl]
¡û
>W1610004130
AGIN01000006
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AGIN]
94942
94871
-
Ala
CGC
[ENA]
¡û
>W1610011855
AOHV01000027
Euryarchaeota
Halalkalicoccus jeotgali B3 [AOHV]
165835
165763
-
Ala
CGC
[ENA]
¡û
>W1610011914
AOHW01000032
Euryarchaeota
Natronorubrum tibetense GA33 [AOHW]
395
324
-
Ala
CGC
[ENA]
¡û
>W1610011981
AOHY01000008
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
107125
107051
-
Ala
CGC
[ENA]
¡û
>W1610012065
AOIA01000021
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
12065
11994
-
Ala
CGC
[ENA]
¡û
>W1610012107
AOIB01000003
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
21640
21569
-
Ala
CGC
[ENA]
¡û
>W1610012202
AOID01000026
Euryarchaeota
Natrinema versiforme JCM 10478 [AOID]
98031
98103
+
Ala
CGC
[ENA]
¡û
>W1610012650
AOIQ01000019
Euryarchaeota
Halovivax asiaticus JCM 14624 [AOIQ]
43504
43578
+
Ala
CGC
[ENA]
¡û
>W1610014601
AOMD01000030
Euryarchaeota
Halococcus saccharolyticus DSM 5350 [AOMD]
313561
313489
-
Ala
CGC
[ENA]
¡û
>W1610014644
AOME01000076
Euryarchaeota
Halococcus salifodinae DSM 8989 [AOME]
120166
120094
-
Ala
CGC
[ENA]
¡û
>W1610019029
ARPH01000005
Euryarchaeota
Natronorubrum tibetense GA33 [ARPH]
652890
652819
-
Ala
CGC
[ENA]
¡û
>W1610029950
AXZD01000012
Euryarchaeota
Halalkalicoccus jeotgali B3 [AXZD]
358016
357944
-
Ala
CGC
[ENA]
¡û
>W1610040554
BAFM01000013
Euryarchaeota
Halococcus agarilyticus 197A [BAFM]
123726
123655
-
Ala
CGC
[ENA]
¡û
>W1610041343
BANO01000074
Euryarchaeota
Halarchaeum acidiphilum MH1-52-1 [BANO]
4908
4837
-
Ala
CGC
[ENA]
¡û
>W1610041524
BATA01000006
Euryarchaeota
Halarchaeum acidiphilum MH1-52-1 JCM 16109 [BATA]
14847
14776
-
Ala
CGC
[ENA]
¡û
>W1610046867
BBCV01000066
Euryarchaeota
Natronolimnobius baerhuensis JCM 12253 [BBCV]
10141
10215
+
Ala
CGC
[ENA]
¡û
>W1610061851
BCMZ01000001
Euryarchaeota
Halobacterium sp. CBA1132 [BCMZ]
182918
182990
+
Ala
CGC
[ENA]
¡û
>W1610085080
CEML01000002
Euryarchaeota
Halobacterium hubeiense JI20-4 [CEML]
44998
45070
+
Ala
CGC
[ENA]
¡û
>W1610085116
CEMN01000001
Euryarchaeota
Halobacterium hubeiense JI20-3 [CEMN]
2419421
2419349
-
Ala
CGC
[ENA]
¡û
>W1610085155
CEMO01000001
Euryarchaeota
Halobacterium hubeiense JI20-2 [CEMO]
2462768
2462696
-
Ala
CGC
[ENA]
¡û
>W1610085194
CEMP01000001
Euryarchaeota
Halobacterium hubeiense JI20-6 [CEMP]
2504656
2504584
-
Ala
CGC
[ENA]
¡û
>W1610085215
CEMQ01000001
Euryarchaeota
Halobacterium hubeiense JI20-7 [CEMQ]
53813
53885
+
Ala
CGC
[ENA]
¡û
>W1610085279
CEMR01000002
Euryarchaeota
Halobacterium hubeiense JI20-5 [CEMR]
53824
53896
+
Ala
CGC
[ENA]
¡û
>W1610085297
CEMZ01000001
Euryarchaeota
Halobacterium hubeiense JI20-8 [CEMZ]
53817
53889
+
Ala
CGC
[ENA]
¡û
>W1610617550
LGUC01000001
Euryarchaeota
Halolamina pelagica CDK2 [LGUC]
915655
915727
+
Ala
CGC
[ENA]
¡û
>W1610682656
LKNG01000043
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g8 [LKNG]
799
728
-
Ala
CGC
[ENA]
¡û
>W1610925027
LTAZ01000001
Euryarchaeota
Halalkalicoccus paucihalophilus DSM 24557 [LTAZ]
542840
542768
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK