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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.340310 (256 seq.)
>W1710785697
LJIC01000006
Alphaproteobacteria
Rhodopseudomonas sp. AAP120 [LJIC]
167
241
+
Val
CAC
[ENA]
¡û
>W1710802969
LJYF01000026
Alphaproteobacteria
Bradyrhizobium yuanmingense [LJYF]
628182
628108
-
Val
CAC
[ENA]
¡û
>W1710803021
LJYG01000080
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
7946
8020
+
Val
CAC
[ENA]
¡û
>W1710861429
LMDP01000002
Alphaproteobacteria
Afipia sp. Root123D2 [LMDP]
775621
775695
+
Val
CAC
[ENA]
¡û
>W1710877744
LMQJ01000015
Alphaproteobacteria
Bradyrhizobium sp. Leaf396 [LMQJ]
5976
6050
+
Val
CAC
[ENA]
¡û
>W1711067427
LSEF01000123
Alphaproteobacteria
Bradyrhizobium neotropicale [LSEF]
8011
8085
+
Val
CAC
[ENA]
¡û
>W1711072991
LSIC01000081
Alphaproteobacteria
Bradyrhizobium sp. CCH5-F6 [LSIC]
4771
4845
+
Val
CAC
[ENA]
¡û
>W1711073380
LSIM01000148
Alphaproteobacteria
Bradyrhizobium sp. CCH4-A6 [LSIM]
4263
4189
-
Val
CAC
[ENA]
¡û
>W1711073408
LSIN01000052
Alphaproteobacteria
Bradyrhizobium sp. CCH10-C7 [LSIN]
4243
4169
-
Val
CAC
[ENA]
¡û
>W1711124777
LUKO01000012
Alphaproteobacteria
Bradyrhizobium liaoningense [LUKO]
823
749
-
Val
CAC
[ENA]
¡û
>W1711129592
LUUB01000061
Alphaproteobacteria
Bradyrhizobium centrolobii BR 10245 [LUUB]
5085
5159
+
Val
CAC
[ENA]
¡û
>W1711138890
LVEM01000004
Alphaproteobacteria
Bradyrhizobium stylosanthis [LVEM]
1047672
1047746
+
Val
CAC
[ENA]
¡û
>W1711169205
LVYV01000053
Alphaproteobacteria
Tardiphaga robiniae [LVYV]
122754
122828
+
Val
CAC
[ENA]
¡û
>W1711180132
LWIG01000035
Alphaproteobacteria
Bradyrhizobium sacchari BR10280 [LWIG]
11173
11099
-
Val
CAC
[ENA]
¡û
>W1711501135
MKRG01000050
Alphaproteobacteria
Afipia sp. 62-7 [MKRG]
17090
17164
+
Val
CAC
[ENA]
¡û
>W1711501353
MKRN01000033
Alphaproteobacteria
Nitrobacter sp. 62-13 [MKRN]
10413
10339
-
Val
CAC
[ENA]
¡û
>W1711502271
MKSM01000140
Alphaproteobacteria
Nitrobacter sp. 62-23 [MKSM]
11630
11704
+
Val
CAC
[ENA]
¡û
>W1711504238
MKUJ01000003
Alphaproteobacteria
Afipia sp. 64-13 [MKUJ]
43706
43780
+
Val
CAC
[ENA]
¡û
>W1711505896
MKVX01000023
Alphaproteobacteria
Rhizobiales bacterium 62-47 [MKVX]
305208
305282
+
Val
CAC
[ENA]
¡û
>W1711783524
MVOD01000019
Alphaproteobacteria
Rhodopseudomonas palustris [MVOD]
65110
65184
+
Val
CAC
[ENA]
¡û
>W1711795360
MWPQ01000019
Alphaproteobacteria
Nitrobacter vulgaris [MWPQ]
18338
18264
-
Val
CAC
[ENA]
¡û
>W1711928278
NAEX01000148
Alphaproteobacteria
Bradyrhizobium canariense [NAEX]
43422
43348
-
Val
CAC
[ENA]
¡û
>W1711928324
NAEY01000123
Alphaproteobacteria
Bradyrhizobium canariense [NAEY]
43422
43348
-
Val
CAC
[ENA]
¡û
>W1711928366
NAEZ01000116
Alphaproteobacteria
Bradyrhizobium canariense [NAEZ]
28240
28166
-
Val
CAC
[ENA]
¡û
>W1711928412
NAFA01000152
Alphaproteobacteria
Bradyrhizobium canariense [NAFA]
28240
28166
-
Val
CAC
[ENA]
¡û
>W1711928465
NAFB01000131
Alphaproteobacteria
Bradyrhizobium canariense [NAFB]
43240
43166
-
Val
CAC
[ENA]
¡û
>W1711928504
NAFC01000136
Alphaproteobacteria
Bradyrhizobium canariense [NAFC]
52719
52645
-
Val
CAC
[ENA]
¡û
>W1711928550
NAFD01000139
Alphaproteobacteria
Bradyrhizobium canariense [NAFD]
4796
4870
+
Val
CAC
[ENA]
¡û
>W1711928598
NAFE01000174
Alphaproteobacteria
Bradyrhizobium canariense [NAFE]
4796
4870
+
Val
CAC
[ENA]
¡û
>W1711928646
NAFF01000049
Alphaproteobacteria
Bradyrhizobium canariense [NAFF]
4796
4870
+
Val
CAC
[ENA]
¡û
>W1711928694
NAFG01000132
Alphaproteobacteria
Bradyrhizobium canariense [NAFG]
4796
4870
+
Val
CAC
[ENA]
¡û
>W1711928745
NAFH01000127
Alphaproteobacteria
Bradyrhizobium canariense [NAFH]
4796
4870
+
Val
CAC
[ENA]
¡û
>W1711928791
NAFI01000131
Alphaproteobacteria
Bradyrhizobium canariense [NAFI]
4796
4870
+
Val
CAC
[ENA]
¡û
>W1711928840
NAFJ01000103
Alphaproteobacteria
Bradyrhizobium canariense [NAFJ]
4879
4953
+
Val
CAC
[ENA]
¡û
>W1711928886
NAFK01000122
Alphaproteobacteria
Bradyrhizobium canariense [NAFK]
4879
4953
+
Val
CAC
[ENA]
¡û
>W1711928931
NAFL01000200
Alphaproteobacteria
Bradyrhizobium japonicum [NAFL]
5395
5469
+
Val
CAC
[ENA]
¡û
>W1712049619
NFUH01000276
Alphaproteobacteria
Bradyrhizobium guangdongense [NFUH]
40273
40199
-
Val
CAC
[ENA]
¡û
>C171021124
CP013127
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 122 [CP013127]
2401986
2401912
-
Val
CAC
-
¡û
>C171064681
CP017637
Alphaproteobacteria
Bradyrhizobium japonicum J5 [CP017637]
8508893
8508967
+
Val
CAC
-
¡û
>C171131974
LT859959
Alphaproteobacteria
Bradyrhizobium sp. ORS 285 [LT859959]
991007
990933
-
Val
CAC
-
¡û
>W131164964
ARBF01000031
Alphaproteobacteria
Bradyrhizobium sp. WSM2793 WSM2793 [ARBF]
5287
5361
+
Val
CAC
[ENA]
¡û
>W131170258
ARFJ01000052
Alphaproteobacteria
Bradyrhizobium japonicum USDA 124 [ARFJ]
23987
23913
-
Val
CAC
[ENA]
¡û
>W131217331
ATWP01000016
Alphaproteobacteria
Bradyrhizobium japonicum is5 [ATWP]
102808
102734
-
Val
CAC
[ENA]
¡û
>W131226903
AUES01000022
Alphaproteobacteria
Bradyrhizobium sp. URHA0002 [AUES]
5421
5495
+
Val
CAC
[ENA]
¡û
>W131227301
AUFA01000047
Alphaproteobacteria
Bradyrhizobium sp. Cp5.3 [AUFA]
5239
5313
+
Val
CAC
[ENA]
¡û
>W131228702
AUGD01000018
Alphaproteobacteria
Bradyrhizobium japonicum in8p8 [AUGD]
102585
102511
-
Val
CAC
[ENA]
¡û
>W131167487
ARDH01000048
Alphaproteobacteria
Bradyrhizobium sp. WSM4349 WSM4349 [ARDH]
5374
5448
+
Val
CAC
[ENA]
¡û
>C003082
BA000040
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 110 USDA110 [BA000040]
2362416
2362342
-
Val
CAC
[Ensembl]
¡û
>C004055
CP000494
Alphaproteobacteria
Bradyrhizobium sp. BTAi1 [CP000494]
6851026
6851100
+
Val
CAC
[Ensembl]
¡û
>C004121
CU234118
Alphaproteobacteria
Bradyrhizobium sp. ORS 278 ORS278 [CU234118]
1575094
1575020
-
Val
CAC
[Ensembl]
¡û
>C014932
CP000319
Alphaproteobacteria
Nitrobacter hamburgensis X14 [CP000319]
3722103
3722177
+
Val
CAC
[Ensembl]
¡û
>C015370
CP000115
Alphaproteobacteria
Nitrobacter winogradskyi Nb-255 [CP000115]
3259630
3259704
+
Val
CAC
[Ensembl]
¡û
>C018850
CP000463
Alphaproteobacteria
Rhodopseudomonas palustris [CP000463]
4799089
4799163
+
Val
CAC
[Ensembl]
¡û
>C018899
CP000301
Alphaproteobacteria
Rhodopseudomonas palustris [CP000301]
4734382
4734456
+
Val
CAC
[Ensembl]
¡û
>C018942
CP000283
Alphaproteobacteria
Rhodopseudomonas palustris BisB5 [CP000283]
4111391
4111465
+
Val
CAC
[Ensembl]
¡û
>C019017
BX571963
Alphaproteobacteria
Rhodopseudomonas palustris [BX571963]
1802563
1802489
-
Val
CAC
[Ensembl]
¡û
>C019048
CP000250
Alphaproteobacteria
Rhodopseudomonas palustris HaA2 [CP000250]
4478622
4478696
+
Val
CAC
[Ensembl]
¡û
>w012979
AAMY01000002
Alphaproteobacteria
Nitrobacter sp. Nb-311A [AAMY]
25132
25206
+
Val
CAC
[ENA]
¡û
>W141001287
ADOU01000044
Alphaproteobacteria
Bradyrhizobium diazoefficiens SEMIA 5080 [ADOU]
4663
4737
+
Val
CAC
[ENA]
¡û
>W141007448
AGWX01000004
Alphaproteobacteria
Afipia broomeae ATCC 49717 [AGWX]
721727
721801
+
Val
CAC
[ENA]
¡û
>W141007492
AGWY01000008
Alphaproteobacteria
Afipia clevelandensis ATCC 49720 [AGWY]
461285
461359
+
Val
CAC
[ENA]
¡û
>W141007530
AGWZ01000001
Alphaproteobacteria
Afipia felis ATCC 53690 [AGWZ]
1890755
1890829
+
Val
CAC
[ENA]
¡û
>WENV180397765
OBPZ01004419
[OBPZ] marine metagenome; ENVO:00002010
1205
1131
-
Val
CAC
[ENA]
¢þ
>W141041863
AMCQ01001800
Alphaproteobacteria
Bradyrhizobium sp. CCGE-LA001 [AMCQ]
1146
1072
-
Val
CAC
[ENA]
¡û
>w001284
AAAF01000010
Alphaproteobacteria
Rhodopseudomonas palustris [AAAF]
262728
262802
+
Val
CAC
[ENA]
¡û
>W141063409
APHQ01000014
Alphaproteobacteria
Afipia sp. OHSU_II-uncloned [APHQ]
52060
51986
-
Val
CAC
[ENA]
¡û
>W141063728
APJE01000027
Alphaproteobacteria
Afipia sp. OHSU_I-C6 [APJE]
35771
35697
-
Val
CAC
[ENA]
¡û
>W141063764
APJF01000009
Alphaproteobacteria
Afipia sp. OHSU_I-C4 [APJF]
60686
60760
+
Val
CAC
[ENA]
¡û
>W141063795
APJG01000011
Alphaproteobacteria
Afipia sp. OHSU_I-uncloned [APJG]
61019
61093
+
Val
CAC
[ENA]
¡û
>W141063832
APJH01000004
Alphaproteobacteria
Afipia sp. OHSU_II-C2 [APJH]
59844
59770
-
Val
CAC
[ENA]
¡û
>W141063916
APJI01000030
Alphaproteobacteria
Afipia sp. OHSU_II-C1 [APJI]
52349
52275
-
Val
CAC
[ENA]
¡û
>W141093622
AVBK01000033
Alphaproteobacteria
Afipia sp. NBIMC_P1-C1 [AVBK]
23781
23855
+
Val
CAC
[ENA]
¡û
>W141093635
AVBL01000008
Alphaproteobacteria
Afipia sp. NBIMC_P1-C2 [AVBL]
33538
33464
-
Val
CAC
[ENA]
¡û
>W141093704
AVBM01000018
Alphaproteobacteria
Afipia sp. NBIMC_P1-C3 [AVBM]
77831
77905
+
Val
CAC
[ENA]
¡û
>WENV181166887
OEIU01003818
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
7061
7135
+
Val
CAC
[ENA]
¢þ
>WENV181167113
OEIU01009094
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1578
1652
+
Val
CAC
[ENA]
¢þ
>WENV181167582
OEIU01045650
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
711
637
-
Val
CAC
[ENA]
¢þ
>WENV181311697
OFJB01008592
[OFJB] sludge metagenome; sludge
1877
1803
-
Val
CAC
[ENA]
¢þ
>WENV181402739
OFTY01033747
[OFTY] sludge metagenome; sludge
384
458
+
Val
CAC
[ENA]
¢þ
>W141149748
AWZU01000005
Alphaproteobacteria
Bradyrhizobium sp. ARR65 [AWZU]
250074
250000
-
Val
CAC
[ENA]
¡û
>W141150061
AXAB01000087
Alphaproteobacteria
Bradyrhizobium sp. WSM2254 [AXAB]
4968
5042
+
Val
CAC
[ENA]
¡û
>W141150148
AXAD01000020
Alphaproteobacteria
Bradyrhizobium arachidis USDA 3384 [AXAD]
156960
156886
-
Val
CAC
[ENA]
¡û
>W141150247
AXAF01000032
Alphaproteobacteria
Bradyrhizobium ottawaense USDA 4 [AXAF]
64289
64215
-
Val
CAC
[ENA]
¡û
>W141150296
AXAG01000034
Alphaproteobacteria
Bradyrhizobium japonicum USDA 38 [AXAG]
5552
5626
+
Val
CAC
[ENA]
¡û
>W141150354
AXAI01000003
Alphaproteobacteria
Bradyrhizobium sp. Tv2a-2 [AXAI]
468064
467990
-
Val
CAC
[ENA]
¡û
>W141151025
AXAS01000118
Alphaproteobacteria
Bradyrhizobium sp. Ec3.3 [AXAS]
5905
5831
-
Val
CAC
[ENA]
¡û
>W141151065
AXAT01000263
Alphaproteobacteria
Bradyrhizobium japonicum USDA 135 [AXAT]
2708
2634
-
Val
CAC
[ENA]
¡û
>W141151161
AXAV01000024
Alphaproteobacteria
Bradyrhizobium japonicum USDA 6 [AXAV]
4827
4901
+
Val
CAC
[ENA]
¡û
>W141151263
AXAX01000043
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 122 [AXAX]
5301
5375
+
Val
CAC
[ENA]
¡û
>W141151287
AXAY01000009
Alphaproteobacteria
Bradyrhizobium sp. WSM3983 [AXAY]
312741
312667
-
Val
CAC
[ENA]
¡û
>W141151348
AXAZ01000066
Alphaproteobacteria
Bradyrhizobium sp. WSM1743 [AXAZ]
42393
42319
-
Val
CAC
[ENA]
¡û
>W141151502
AXBC01000009
Alphaproteobacteria
Bradyrhizobium genosp. SA-4 SA-4 str. CB756 [AXBC]
277242
277168
-
Val
CAC
[ENA]
¡û
>W141168826
AXVG01000007
Alphaproteobacteria
Bradyrhizobium japonicum 22 [AXVG]
141442
141368
-
Val
CAC
[ENA]
¡û
>W141169210
AXVP01000067
Alphaproteobacteria
Bradyrhizobium japonicum USDA 123 [AXVP]
5762
5836
+
Val
CAC
[ENA]
¡û
>W08007845
ABKN01000001
Alphaproteobacteria
Afipia carboxidovorans OM5 [ABKN]
3087143
3087217
+
Val
CAC
[ENA]
¡û
>W141194169
AYSU01000034
Alphaproteobacteria
Rhodopseudomonas palustris JSC-3b [AYSU]
17745
17671
-
Val
CAC
[ENA]
¡û
>W141220423
AZXU01000002
Alphaproteobacteria
Bradyrhizobium sp. WSM1417 [AZXU]
1473333
1473259
-
Val
CAC
[ENA]
¡û
>W141233863
BAWE01000002
Alphaproteobacteria
Bradyrhizobium sp. DOA9 [BAWE]
177258
177332
+
Val
CAC
[ENA]
¡û
>WENV182406767
OIFA01003181
[OIFA] human gut metagenome; stool
123
197
+
Val
CAC
[ENA]
¢þ
>WENV182409098
OIFG01001626
[OIFG] human gut metagenome; stool
1169
1243
+
Val
CAC
[ENA]
¢þ
>WENV182411596
OIFP01004942
[OIFP] human gut metagenome; stool
499
573
+
Val
CAC
[ENA]
¢þ
>WENV182411938
OIFQ01002597
[OIFQ] human gut metagenome; stool
331
405
+
Val
CAC
[ENA]
¢þ
>W141240105
CAFK01000332
Alphaproteobacteria
Bradyrhizobium sp. STM 3843 [CAFK]
8259
8185
-
Val
CAC
[ENA]
¡û
>W141243619
CAJQ02000044
Alphaproteobacteria
Afipia birgiae 34632 [CAJQ]
227056
227130
+
Val
CAC
[ENA]
¡û
>W141261731
CCAZ010000208
Alphaproteobacteria
Afipia felis [CCAZ]
4939
5013
+
Val
CAC
[ENA]
¡û
>W141275928
JADK01000003
Alphaproteobacteria
Bradyrhizobium sp. URHA0013 [JADK]
5763
5837
+
Val
CAC
[ENA]
¡û
>WENV182954979
OKWB01001454
[OKWB] human gut metagenome; stool
1304
1230
-
Val
CAC
[ENA]
¢þ
>WENV182962898
OKWO01005535
[OKWO] human gut metagenome; stool
647
573
-
Val
CAC
[ENA]
¢þ
>WENV182962976
OKWP01000057
[OKWP] human gut metagenome; stool
113593
113519
-
Val
CAC
[ENA]
¢þ
>WENV182966360
OKWV01001306
[OKWV] human gut metagenome; stool
426
500
+
Val
CAC
[ENA]
¢þ
>WENV182966591
OKWW01004266
[OKWW] human gut metagenome; stool
274
200
-
Val
CAC
[ENA]
¢þ
>WENV183636480
OOKD01007177
[OOKD] human gut metagenome; Skin biopsy
560
486
-
Val
CAC
[ENA]
¢þ
>WENV183728011
PJTP01016723
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
257
331
+
Val
CAC
[ENA]
¢þ
>WENV183729180
PJTQ01009147
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
362
288
-
Val
CAC
[ENA]
¢þ
>WENV183736622
PJUC01025823
[PJUC] soil metagenome; Soil enriched on filter paper
110
36
-
Val
CAC
[ENA]
¢þ
>WENV183740454
PJUF01002329
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
2076
2002
-
Val
CAC
[ENA]
¢þ
>WENV183745085
PJUL01002116
[PJUL] feces metagenome; Chicken feces enriched on filter paper
3225
3151
-
Val
CAC
[ENA]
¢þ
>WENV170653184
JRYI01013612
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
931
857
-
Val
CAC
[ENA]
¢þ
>WENV170707254
LNAP01016186
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
5208
5134
-
Val
CAC
[ENA]
¢þ
>WENV170707564
LNAP01025511
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
278
352
+
Val
CAC
[ENA]
¢þ
>WENV170708042
LNAP01046028
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1554
1480
-
Val
CAC
[ENA]
¢þ
>W09102994
AAIS01000001
Alphaproteobacteria
Nitrobacter hamburgensis X14 [AAIS]
38722
38648
-
Val
CAC
[ENA]
¡û
>W09103829
AAKZ01000009
Alphaproteobacteria
Rhodopseudomonas palustris BisB5 [AAKZ]
194099
194173
+
Val
CAC
[ENA]
¡û
>W09103876
AALA01000012
Alphaproteobacteria
Rhodopseudomonas palustris BisA53 [AALA]
163921
163995
+
Val
CAC
[ENA]
¡û
>W09104108
AALJ01000002
Alphaproteobacteria
Bradyrhizobium sp. BTAi1 [AALJ]
937275
937349
+
Val
CAC
[ENA]
¡û
>W09104357
AALQ01000002
Alphaproteobacteria
Rhodopseudomonas palustris HaA2 [AALQ]
649987
650061
+
Val
CAC
[ENA]
¡û
>W09104442
AALR01000029
Alphaproteobacteria
Rhodopseudomonas palustris BisB18 [AALR]
24375
24301
-
Val
CAC
[ENA]
¡û
>W09107616
ABJR01000012
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [ABJR]
17385
17311
-
Val
CAC
[ENA]
¡û
>WENV170961932
MLJW01008018
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
874
800
-
Val
CAC
[ENA]
¢þ
>WENV170974905
MTKY01080809
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1852
1778
-
Val
CAC
[ENA]
¢þ
>C181041882
CP019966
Alphaproteobacteria
Rhodopseudomonas palustris PS3 [CP019966]
1740400
1740326
-
Val
CAC
-
¡û
>C181041930
CP019967
Alphaproteobacteria
Rhodopseudomonas palustris YSC3 [CP019967]
1730597
1730523
-
Val
CAC
-
¡û
>C181178129
CP029425
Alphaproteobacteria
Bradyrhizobium ottawaense OO99 [CP029425]
462347
462421
+
Val
CAC
-
¡û
>C181178220
CP029426
Alphaproteobacteria
Bradyrhizobium amphicarpaeae 39S1MB [CP029426]
1082472
1082398
-
Val
CAC
-
¡û
>C181178266
CP029427
Alphaproteobacteria
Bradyrhizobium symbiodeficiens 85S1MB [CP029427]
797018
796944
-
Val
CAC
-
¡û
>C181181585
CP029603
Alphaproteobacteria
Bradyrhizobium diazoefficiens XF7 [CP029603]
2597580
2597506
-
Val
CAC
-
¡û
>C181203878
LS398110
Alphaproteobacteria
Bradyrhizobium vignae [LS398110]
1357291
1357217
-
Val
CAC
-
¡û
>C191019717
CP022219
Alphaproteobacteria
Bradyrhizobium guangxiense CCBAU 53363 [CP022219]
916111
916037
-
Val
CAC
-
¡û
>C191019743
CP022221
Alphaproteobacteria
Bradyrhizobium zhanjiangense CCBAU 51778 [CP022221]
7810365
7810439
+
Val
CAC
-
¡û
>C191071675
CP030051
Alphaproteobacteria
Bradyrhizobium guangdongense CCBAU 51649 [CP030051]
6315041
6315115
+
Val
CAC
-
¡û
>C191071725
CP030053
Alphaproteobacteria
Bradyrhizobium guangzhouense CCBAU 51670 [CP030053]
6038150
6038224
+
Val
CAC
-
¡û
>C191092052
CP032617
Alphaproteobacteria
Bradyrhizobium diazoefficiens 110spc4 [CP032617]
2297760
2297686
-
Val
CAC
-
¡û
>C191186648
CP041090
Alphaproteobacteria
Bradyrhizobium symbiodeficiens 65S1MB [CP041090]
7085403
7085329
-
Val
CAC
-
¡û
>W1910182840
BJNF01000040
Alphaproteobacteria
Nitrobacter winogradskyi NBRC 14297 [BJNF]
11494
11420
-
Val
CAC
[ENA]
¡û
>W1910183100
BJNK01000064
Alphaproteobacteria
Bradyrhizobium japonicum NBRC 14783 [BJNK]
28237
28163
-
Val
CAC
[ENA]
¡û
>W1910548979
FZOX01000007
Alphaproteobacteria
Tardiphaga sp. OK246 [FZOX]
250211
250285
+
Val
CAC
[ENA]
¡û
>W1910568878
JHAA01000002
Alphaproteobacteria
Rhodopseudomonas palustris PSBS [JHAA]
1310104
1310178
+
Val
CAC
[ENA]
¡û
>W1910598251
LAXE01000001
Alphaproteobacteria
Bradyrhizobium sp. SUTN9-2 [LAXE]
7510244
7510318
+
Val
CAC
[ENA]
¡û
>W1910598949
LBJC01000025
Alphaproteobacteria
Bradyrhizobium nanningense CCBAU 53390 [LBJC]
155517
155443
-
Val
CAC
[ENA]
¡û
>W1910599020
LBJM01000203
Alphaproteobacteria
Bradyrhizobium zhanjiangense CCBAU 51787 [LBJM]
30588
30514
-
Val
CAC
[ENA]
¡û
>W1910599045
LBJQ01000083
Alphaproteobacteria
Bradyrhizobium nanningense CCBAU 51757 [LBJQ]
63156
63230
+
Val
CAC
[ENA]
¡û
>W1910611568
LFJC01000003
Alphaproteobacteria
Bradyrhizobium nitroreducens TSA1 [LFJC]
4508143
4508069
-
Val
CAC
[ENA]
¡û
>W1910840282
MZXW01000039
Alphaproteobacteria
Bradyrhizobium betae Opo-243 [MZXW]
4785
4859
+
Val
CAC
[ENA]
¡û
>C09108144
CP001196
Alphaproteobacteria
Afipia carboxidovorans OM5 OM5; ATCC 49405 [CP001196]
3086829
3086903
+
Val
CAC
-
¡û
>W1911219168
NRSI01000018
Alphaproteobacteria
Rhodopseudomonas palustris DSM 126 [NRSI]
96456
96530
+
Val
CAC
[ENA]
¡û
>W1911409811
NWTE01000032
Alphaproteobacteria
Bradyrhizobium diazoefficiens Y21 [NWTE]
4729
4803
+
Val
CAC
[ENA]
¡û
>W1911409844
NWTF01000014
Alphaproteobacteria
Bradyrhizobium ottawaense L2 [NWTF]
4750
4824
+
Val
CAC
[ENA]
¡û
>W1911409987
NWTI01000001
Alphaproteobacteria
Bradyrhizobium sp. Y36 [NWTI]
695118
695044
-
Val
CAC
[ENA]
¡û
>W1911629611
PSRT01000090
Alphaproteobacteria
Bradyrhizobium genosp. SA-3 SA-3 Rp7b [PSRT]
4686
4760
+
Val
CAC
[ENA]
¡û
>W1911760594
QWVU01000109
Alphaproteobacteria
Rhodopseudomonas palustris R1 [QWVU]
2887
2813
-
Val
CAC
[ENA]
¡û
>W1911809202
QYYC01000051
Alphaproteobacteria
Rhodopseudomonas palustris 2.1.37 [QYYC]
809756
809682
-
Val
CAC
[ENA]
¡û
>W1911809246
QYYD01000055
Alphaproteobacteria
Rhodopseudomonas palustris 2.1.18 [QYYD]
475
401
-
Val
CAC
[ENA]
¡û
>W1911817894
QZMV01000052
Alphaproteobacteria
Bradyrhizobium sp. LVM 105 [QZMV]
3139
3065
-
Val
CAC
[ENA]
¡û
>W1810089627
PGEV01000001
Alphaproteobacteria
Afipia broomeae GAS525 [PGEV]
4648842
4648916
+
Val
CAC
[ENA]
¡û
>W1810104436
PGVG01000038
Alphaproteobacteria
Bradyrhizobium forestalis INPA54B [PGVG]
4808
4882
+
Val
CAC
[ENA]
¡û
>W1810289890
PTFE01000161
Alphaproteobacteria
Bradyrhizobium sp. AC87j1 [PTFE]
4802
4876
+
Val
CAC
[ENA]
¡û
>W1810400146
PYFW01000002
Alphaproteobacteria
Bradyrhizobium sp. MOS003 [PYFW]
4782
4856
+
Val
CAC
[ENA]
¡û
>W1810400222
PYFX01000016
Alphaproteobacteria
Bradyrhizobium sp. MOS002 [PYFX]
119532
119458
-
Val
CAC
[ENA]
¡û
>W1810576942
QENW01000002
Alphaproteobacteria
Tardiphaga sp. OV697 [QENW]
936882
936956
+
Val
CAC
[ENA]
¡û
>W1810672329
QJTI01000032
Alphaproteobacteria
Rhodopseudomonas faecalis JCM 11668 [QJTI]
21860
21786
-
Val
CAC
[ENA]
¡û
>W1810679419
QKQS01000006
Alphaproteobacteria
Rhodopseudomonas palustris XCP [QKQS]
304326
304400
+
Val
CAC
[ENA]
¡û
>W1810784396
QRAQ01000004
Alphaproteobacteria
Tardiphaga sp. CF115 [QRAQ]
17619
17693
+
Val
CAC
[ENA]
¡û
>W1810787532
QRDT01000042
Alphaproteobacteria
Rhodopseudomonas pentothenatexigens JA575 [QRDT]
4837
4911
+
Val
CAC
[ENA]
¡û
>W1810884429
QUMP01000042
Alphaproteobacteria
Rhodopseudomonas thermotolerans JA576,NBRC 108863,KCTC 15144 [QUMP]
4837
4911
+
Val
CAC
[ENA]
¡û
>C151066545
CP010313
Alphaproteobacteria
Bradyrhizobium japonicum E109 [CP010313]
7951240
7951314
+
Val
CAC
[Ensembl]
¡û
>W10112833
ADFI01000023
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
12332
12258
-
Val
CAC
[ENA]
¡û
>W10119575
ADVZ01000003
Alphaproteobacteria
Afipia sp. 1NLS2 [ADVZ]
390598
390524
-
Val
CAC
[ENA]
¡û
>C10110779
CP001096
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [CP001096]
1946136
1946062
-
Val
CAC
[Ensembl]
¡û
>C11116294
CP002821
Alphaproteobacteria
Afipia carboxidovorans OM4 [CP002821]
1037517
1037443
-
Val
CAC
[Ensembl]
¡û
>W1510973748
JGCL01000021
Alphaproteobacteria
Bradyrhizobium japonicum FN1 [JGCL]
212026
211952
-
Val
CAC
[ENA]
¡û
>W11116060
ADFI01000023
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
12332
12258
-
Val
CAC
[ENA]
¡û
>C11118760
CP002418
Alphaproteobacteria
Rhodopseudomonas palustris [CP002418]
4186126
4186200
+
Val
CAC
[Ensembl]
¡û
>W1511353656
JRPN01000067
Alphaproteobacteria
Bradyrhizobium japonicum Is-34 [JRPN]
8963
8889
-
Val
CAC
[ENA]
¡û
>W11125841
ADVZ01000003
Alphaproteobacteria
Afipia sp. 1NLS2 [ADVZ]
390598
390524
-
Val
CAC
[ENA]
¡û
>W1511517253
JXXE01000172
Alphaproteobacteria
Rhodopseudomonas palustris BAL398 [JXXE]
787
713
-
Val
CAC
[ENA]
¡û
>W1511533286
JYMR01000050
Alphaproteobacteria
Bradyrhizobium sp. LTSP849 [JYMR]
234503
234429
-
Val
CAC
[ENA]
¡û
>W1511533308
JYMS01000026
Alphaproteobacteria
Bradyrhizobium sp. LTSP857 [JYMS]
8091
8165
+
Val
CAC
[ENA]
¡û
>W1511591979
LBIA01000001
Alphaproteobacteria
Afipia massiliensis LC387 [LBIA]
1496607
1496681
+
Val
CAC
[ENA]
¡û
>W1511625921
LCZM01000017
Alphaproteobacteria
Rhodopseudomonas palustris 42OL [LCZM]
4743
4817
+
Val
CAC
[ENA]
¡û
>W1511706721
LGUJ01000062
Alphaproteobacteria
Bradyrhizobium diazoefficiens Is-1 [LGUJ]
4687
4761
+
Val
CAC
[ENA]
¡û
>W11168467
AFOF01000037
Alphaproteobacteria
Bradyrhizobiaceae bacterium SG-6C [AFOF]
122545
122619
+
Val
CAC
[ENA]
¡û
>C121000475
AP012206
Alphaproteobacteria
Bradyrhizobium japonicum USDA 6 [AP012206]
7919767
7919841
+
Val
CAC
[Ensembl]
¡û
>C121000726
AP012279
Alphaproteobacteria
Bradyrhizobium cosmicum S23321 [AP012279]
6038597
6038671
+
Val
CAC
[Ensembl]
¡û
>C121003014
CP002826
Alphaproteobacteria
Afipia carboxidovorans OM5 [CP002826]
1037605
1037531
-
Val
CAC
-
¡û
>C161001048
AP014685
Alphaproteobacteria
Bradyrhizobium diazoefficiens NK6 [AP014685]
5898614
5898540
-
Val
CAC
-
¡û
>C161017419
CP007569
Alphaproteobacteria
Bradyrhizobium japonicum SEMIA 5079 [CP007569]
448274
448200
-
Val
CAC
[Ensembl]
¡û
>C161034260
CP011360
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 110 [CP011360]
1681804
1681730
-
Val
CAC
-
¡û
>C161062550
CP013949
Alphaproteobacteria
Bradyrhizobium sp. CCGE-LA001 [CP013949]
1587295
1587221
-
Val
CAC
[Ensembl]
¡û
>C161107830
LN901633
Alphaproteobacteria
Bradyrhizobium sp. [LN901633]
2902753
2902827
+
Val
CAC
-
¡û
>C161107931
LN907826
Alphaproteobacteria
Bradyrhizobium sp. [LN907826]
8229084
8229158
+
Val
CAC
-
¡û
>W121036219
AHLW01000001
Alphaproteobacteria
Bradyrhizobium sp. WSM471 [AHLW]
1971916
1971842
-
Val
CAC
[ENA]
¡û
>W121036445
AHMB01000049
Alphaproteobacteria
Bradyrhizobium sp. WSM1253 [AHMB]
170980
170906
-
Val
CAC
[ENA]
¡û
>W121065297
AJPX01000380
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15354 [AJPX]
5184
5258
+
Val
CAC
[ENA]
¡û
>W121065369
AJPY01000807
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15517 [AJPY]
421
347
-
Val
CAC
[ENA]
¡û
>W121065417
AJPZ01000495
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15618 [AJPZ]
1601
1675
+
Val
CAC
[ENA]
¡û
>W121065464
AJQA01000399
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 25435 [AJQA]
24733
24659
-
Val
CAC
[ENA]
¡û
>W121065513
AJQB01000837
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 83623 [AJQB]
5221
5295
+
Val
CAC
[ENA]
¡û
>W121065547
AJQC01000499
Alphaproteobacteria
Bradyrhizobium liaoningense CCBAU 05525 [AJQC]
558
484
-
Val
CAC
[ENA]
¡û
>W121065602
AJQD01000706
Alphaproteobacteria
Bradyrhizobium liaoningense CCBAU 83689 [AJQD]
5406
5480
+
Val
CAC
[ENA]
¡û
>W121065652
AJQE01000394
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 43298 [AJQE]
4706
4780
+
Val
CAC
[ENA]
¡û
>W121065688
AJQF01000400
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 15544 [AJQF]
48983
48909
-
Val
CAC
[ENA]
¡û
>W121065711
AJQG01000091
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 15615 [AJQG]
4681
4755
+
Val
CAC
[ENA]
¡û
>W121065792
AJQH01000360
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 15635 [AJQH]
4706
4780
+
Val
CAC
[ENA]
¡û
>W121065840
AJQI01000427
Alphaproteobacteria
Bradyrhizobium diazoefficiens CCBAU 41267 [AJQI]
10331
10257
-
Val
CAC
[ENA]
¡û
>W121065848
AJQJ01000077
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 05623 [AJQJ]
294
368
+
Val
CAC
[ENA]
¡û
>W121065932
AJQK01000275
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 25021 [AJQK]
316
390
+
Val
CAC
[ENA]
¡û
>W121065962
AJQL01000266
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 35157 [AJQL]
8678
8604
-
Val
CAC
[ENA]
¡û
>W121085087
AKIY01000222
Alphaproteobacteria
Bradyrhizobium sp. YR681 [AKIY]
4690
4764
+
Val
CAC
[ENA]
¡û
>W121127079
CAFH01000128
Alphaproteobacteria
Bradyrhizobium sp. ORS 285 [CAFH]
5665
5739
+
Val
CAC
[ENA]
¡û
>W121127118
CAFI01000085
Alphaproteobacteria
Bradyrhizobium sp. ORS 375 [CAFI]
40769
40695
-
Val
CAC
[ENA]
¡û
>W121127190
CAFJ01000727
Alphaproteobacteria
Bradyrhizobium sp. STM 3809 [CAFJ]
4989
5063
+
Val
CAC
[ENA]
¡û
>C131000840
AP012603
Alphaproteobacteria
Bradyrhizobium oligotrophicum S58 [AP012603]
1950358
1950284
-
Val
CAC
[Ensembl]
¡û
>W1610514420
FMAE01000003
Alphaproteobacteria
Bradyrhizobium yuanmingense [FMAE]
799201
799127
-
Val
CAC
[ENA]
¡û
>W1610514609
FMAI01000008
Alphaproteobacteria
Bradyrhizobium shewense err11 [FMAI]
4998
5072
+
Val
CAC
[ENA]
¡û
>W1610549141
JXDL01000001
Alphaproteobacteria
Bradyrhizobium sp. AT1 [JXDL]
3750378
3750452
+
Val
CAC
[ENA]
¡û
>W1610550327
JXJM01000001
Alphaproteobacteria
Bradyrhizobium sp. DOA1 [JXJM]
1037737
1037663
-
Val
CAC
[ENA]
¡û
>W1610649503
LJIC01000006
Alphaproteobacteria
Rhodopseudomonas sp. AAP120 [LJIC]
167
241
+
Val
CAC
[ENA]
¡û
>W1610666826
LJYF01000026
Alphaproteobacteria
Bradyrhizobium yuanmingense [LJYF]
628182
628108
-
Val
CAC
[ENA]
¡û
>W1610666878
LJYG01000080
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
7946
8020
+
Val
CAC
[ENA]
¡û
>W1610723775
LMDP01000002
Alphaproteobacteria
Afipia sp. Root123D2 [LMDP]
775621
775695
+
Val
CAC
[ENA]
¡û
>W1610740090
LMQJ01000015
Alphaproteobacteria
Bradyrhizobium sp. Leaf396 [LMQJ]
5976
6050
+
Val
CAC
[ENA]
¡û
>W1610907997
LSEF01000123
Alphaproteobacteria
Bradyrhizobium neotropicale [LSEF]
8011
8085
+
Val
CAC
[ENA]
¡û
>W1610912251
LSIC01000081
Alphaproteobacteria
Bradyrhizobium sp. CCH5-F6 [LSIC]
4771
4845
+
Val
CAC
[ENA]
¡û
>W1610912685
LSIM01000148
Alphaproteobacteria
Bradyrhizobium sp. CCH4-A6 [LSIM]
4263
4189
-
Val
CAC
[ENA]
¡û
>W1610912713
LSIN01000052
Alphaproteobacteria
Bradyrhizobium sp. CCH10-C7 [LSIN]
4243
4169
-
Val
CAC
[ENA]
¡û
>W1610935749
LUKO01000012
Alphaproteobacteria
Bradyrhizobium liaoningense [LUKO]
823
749
-
Val
CAC
[ENA]
¡û
>W1610940665
LUUB01000061
Alphaproteobacteria
Bradyrhizobium centrolobii BR 10245 [LUUB]
5085
5159
+
Val
CAC
[ENA]
¡û
>W1610949898
LVEM01000004
Alphaproteobacteria
Bradyrhizobium stylosanthis [LVEM]
1047672
1047746
+
Val
CAC
[ENA]
¡û
>W1610979000
LVYV01000053
Alphaproteobacteria
Tardiphaga robiniae [LVYV]
122754
122828
+
Val
CAC
[ENA]
¡û
>W1710500110
FMAE01000003
Alphaproteobacteria
Bradyrhizobium yuanmingense [FMAE]
799201
799127
-
Val
CAC
[ENA]
¡û
>W1710500299
FMAI01000008
Alphaproteobacteria
Bradyrhizobium shewense err11 [FMAI]
4998
5072
+
Val
CAC
[ENA]
¡û
>W1710516775
FNCU01000035
Alphaproteobacteria
Bradyrhizobium sp. Rc2d [FNCU]
4982
5056
+
Val
CAC
[ENA]
¡û
>W1710536615
FNTI01000001
Alphaproteobacteria
Bradyrhizobium lablabi [FNTI]
2241111
2241185
+
Val
CAC
[ENA]
¡û
>W1710540683
FNWZ01000005
Alphaproteobacteria
Tardiphaga sp. OK245 [FNWZ]
622355
622429
+
Val
CAC
[ENA]
¡û
>W1710546040
FOBX01000024
Alphaproteobacteria
Bradyrhizobium sp. OK095 [FOBX]
5521
5595
+
Val
CAC
[ENA]
¡û
>W1710548405
FODT01000003
Alphaproteobacteria
Rhodopseudomonas pseudopalustris [FODT]
488698
488772
+
Val
CAC
[ENA]
¡û
>W1710564281
FOQJ01000009
Alphaproteobacteria
Bradyrhizobium sp. cf659 [FOQJ]
297834
297760
-
Val
CAC
[ENA]
¡û
>W1710564431
FOQM01000018
Alphaproteobacteria
Bradyrhizobium sp. Gha [FOQM]
148347
148273
-
Val
CAC
[ENA]
¡û
>W1710568442
FOTP01000007
Alphaproteobacteria
Bradyrhizobium sp. NFR13 [FOTP]
17885
17959
+
Val
CAC
[ENA]
¡û
>W1710569824
FOUS01000012
Alphaproteobacteria
Bradyrhizobium sp. Rc3b [FOUS]
280434
280360
-
Val
CAC
[ENA]
¡û
>W1710571318
FOVU01000012
Alphaproteobacteria
Bradyrhizobium sp. Ghvi [FOVU]
5234
5308
+
Val
CAC
[ENA]
¡û
>W1710578541
FPBQ01000057
Alphaproteobacteria
Bradyrhizobium arachidis [FPBQ]
5338
5412
+
Val
CAC
[ENA]
¡û
>W1710652715
JXDL01000001
Alphaproteobacteria
Bradyrhizobium sp. AT1 [JXDL]
3750378
3750452
+
Val
CAC
[ENA]
¡û
>W1710659053
JXJM01000001
Alphaproteobacteria
Bradyrhizobium sp. DOA1 [JXJM]
1037737
1037663
-
Val
CAC
[ENA]
¡û
>W1710735649
LGHL01000115
Alphaproteobacteria
Bradyrhizobium sp. NAS80.1 [LGHL]
30376
30302
-
Val
CAC
[ENA]
¡û
>W1710735676
LGHM01000018
Alphaproteobacteria
Bradyrhizobium sp. AS23.2 [LGHM]
67895
67821
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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