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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.343491 (23 seq.)
>W1711249817
LYMA02000050
Alphaproteobacteria
Orientia tsutsugamushi [LYMA]
30010
29936
-
Thr
TGT
[ENA]
¡û
>W1711249840
LYMB01000158
Alphaproteobacteria
Orientia tsutsugamushi [LYMB]
1379
1453
+
Thr
TGT
[ENA]
¡û
>C015520
AM494475
Alphaproteobacteria
Orientia tsutsugamushi str. Boryong [AM494475]
535707
535633
-
Thr
TGT
[Ensembl]
¡û
>WENV181853696
OGWJ01000001
[OGWJ] freshwater metagenome; freshwater
15360
15434
+
Thr
TGT
[ENA]
¢þ
>C08007115
AP008981
Alphaproteobacteria
Orientia tsutsugamushi str. Ikeda [AP008981]
827639
827713
+
Thr
TGT
[Ensembl]
¡û
>WENV170998047
MWWI01003006
[MWWI] soil metagenome; FI-1 sample; Antarctic (ecotone) soil
1317
1391
+
Thr
TGT
[ENA]
¢þ
>C181203886
LS398547
Alphaproteobacteria
Orientia tsutsugamushi [LS398547]
1040817
1040891
+
Thr
TGT
-
¡û
>C181203917
LS398548
Alphaproteobacteria
Orientia tsutsugamushi [LS398548]
845023
845097
+
Thr
TGT
-
¡û
>C181203983
LS398550
Alphaproteobacteria
Orientia tsutsugamushi [LS398550]
1853002
1853076
+
Thr
TGT
-
¡û
>C181204020
LS398551
Alphaproteobacteria
Orientia tsutsugamushi str. Gilliam [LS398551]
2108516
2108590
+
Thr
TGT
-
¡û
>C181204041
LS398552
Alphaproteobacteria
Orientia tsutsugamushi [LS398552]
763341
763415
+
Thr
TGT
-
¡û
>W1911544936
OUNA01000006
Alphaproteobacteria
Orientia tsutsugamushi [OUNA]
140792
140718
-
Thr
TGT
[ENA]
¡û
>W1511574103
LANM01000001
Alphaproteobacteria
Orientia tsutsugamushi str. Karp [LANM]
30612
30686
+
Thr
TGT
[ENA]
¡û
>W1511574150
LANN01000020
Alphaproteobacteria
Orientia tsutsugamushi str. Kato PP [LANN]
2164
2238
+
Thr
TGT
[ENA]
¡û
>W1511574182
LANO01000031
Alphaproteobacteria
Orientia tsutsugamushi str. Gilliam [LANO]
692
766
+
Thr
TGT
[ENA]
¡û
>W1511574208
LANP01000014
Alphaproteobacteria
Candidatus Orientia mediorientalis str. Fuller [LANP]
9036
8962
-
Thr
TGT
[ENA]
¡û
>W1511574509
LANY01000001
Alphaproteobacteria
Orientia tsutsugamushi str. TA763 [LANY]
47291
47217
-
Thr
TGT
[ENA]
¡û
>W1511574541
LANZ01000003
Alphaproteobacteria
Orientia tsutsugamushi str. UT76 [LANZ]
34860
34786
-
Thr
TGT
[ENA]
¡û
>W1511574558
LANZ01000030
Alphaproteobacteria
Orientia tsutsugamushi str. UT76 [LANZ]
4473
4399
-
Thr
TGT
[ENA]
¡û
>W1511574592
LAOA01000002
Alphaproteobacteria
Orientia tsutsugamushi str. TA716 [LAOA]
8321
8247
-
Thr
TGT
[ENA]
¡û
>W1511575145
LAOR01000007
Alphaproteobacteria
Orientia tsutsugamushi str. UT144 [LAOR]
6050
6124
+
Thr
TGT
[ENA]
¡û
>W1611016791
LYMA01000050
Alphaproteobacteria
Orientia tsutsugamushi [LYMA]
30010
29936
-
Thr
TGT
[ENA]
¡û
>W1611016814
LYMB01000158
Alphaproteobacteria
Orientia tsutsugamushi [LYMB]
1379
1453
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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