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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.350801 (38 seq.)
>W1711091072
LTBC01000001
Bacillota
Moorella mulderi DSM 14980 [LTBC]
243532
243606
+
Glu
TTC
[ENA]
¡û
>W1711352266
MDDB01000003
Bacillota
Moorella thermoacetica [MDDB]
79834
79908
+
Glu
TTC
[ENA]
¡û
>W1711352275
MDDB01000003
Bacillota
Moorella thermoacetica [MDDB]
388517
388591
+
Glu
TTC
[ENA]
¡û
>W1711352321
MDDC01000006
Bacillota
Moorella thermoacetica [MDDC]
132785
132859
+
Glu
TTC
[ENA]
¡û
>W1711352331
MDDC01000009
Bacillota
Moorella thermoacetica [MDDC]
48082
48008
-
Glu
TTC
[ENA]
¡û
>W1711352389
MDDD01000012
Bacillota
Moorella thermoacetica [MDDD]
9371
9297
-
Glu
TTC
[ENA]
¡û
>W1711352392
MDDD01000013
Bacillota
Moorella thermoacetica [MDDD]
29976
29902
-
Glu
TTC
[ENA]
¡û
>W1711352420
MDDE01000002
Bacillota
Moorella thermoacetica [MDDE]
80454
80380
-
Glu
TTC
[ENA]
¡û
>W1711352450
MDDE01000014
Bacillota
Moorella thermoacetica [MDDE]
60570
60644
+
Glu
TTC
[ENA]
¡û
>W1711428514
MIHH01000001
Bacillota
Moorella thermoacetica [MIHH]
34009
34083
+
Glu
TTC
[ENA]
¡û
>W1711428523
MIHH01000001
Bacillota
Moorella thermoacetica [MIHH]
341453
341527
+
Glu
TTC
[ENA]
¡û
>W1711428579
MIIF01000004
Bacillota
Moorella thermoacetica [MIIF]
140657
140583
-
Glu
TTC
[ENA]
¡û
>W1711428590
MIIF01000006
Bacillota
Moorella thermoacetica [MIIF]
71155
71229
+
Glu
TTC
[ENA]
¡û
>C171055167
CP017019
Bacillota
Moorella thermoacetica DSM 103132 [CP017019]
99085
99159
+
Glu
TTC
-
¡û
>C171055198
CP017019
Bacillota
Moorella thermoacetica DSM 103132 [CP017019]
2771863
2771937
+
Glu
TTC
-
¡û
>C171058940
CP017237
Bacillota
Moorella thermoacetica DSM 103284 [CP017237]
96340
96414
+
Glu
TTC
-
¡û
>C171058964
CP017237
Bacillota
Moorella thermoacetica DSM 103284 [CP017237]
2358818
2358892
+
Glu
TTC
-
¡û
>C014157
CP000232
Bacillota
Moorella thermoacetica [CP000232]
99530
99604
+
Glu
TTC
[Ensembl]
¡û
>C014183
CP000232
Bacillota
Moorella thermoacetica [CP000232]
2419632
2419706
+
Glu
TTC
[Ensembl]
¡û
>W141229787
BARR01000020
Bacillota
Moorella thermoacetica Y72 [BARR]
342
416
+
Glu
TTC
[ENA]
¡û
>W141229800
BARR01000026
Bacillota
Moorella thermoacetica Y72 [BARR]
144
218
+
Glu
TTC
[ENA]
¡û
>WENV170686546
LFRM01150432
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
297
223
-
Glu
TTC
[ENA]
¢þ
>C191073413
CP031054
Bacillota
Moorella thermoacetica 39073-HH [CP031054]
99082
99156
+
Glu
TTC
-
¡û
>C191073440
CP031054
Bacillota
Moorella thermoacetica 39073-HH [CP031054]
2436060
2436134
+
Glu
TTC
-
¡û
>W09100914
AADT03000001
Bacillota
Moorella thermoacetica ATCC 39073 [AADT]
143495
143569
+
Glu
TTC
[ENA]
¡û
>W09100940
AADT03000022
Bacillota
Moorella thermoacetica ATCC 39073 [AADT]
33825
33751
-
Glu
TTC
[ENA]
¡û
>W1910180042
BJKN01000001
Bacillota
Moorella sp. E308F [BJKN]
500576
500650
+
Glu
TTC
[ENA]
¡û
>W1910180123
BJKO01000001
Bacillota
Moorella sp. E306M [BJKO]
1447316
1447242
-
Glu
TTC
[ENA]
¡û
>W1810010457
BFFN01000018
Bacillota
Moorella sp. Hama-1 [BFFN]
59184
59110
-
Glu
TTC
[ENA]
¡û
>W1810010461
BFFN01000026
Bacillota
Moorella sp. Hama-1 [BFFN]
24412
24486
+
Glu
TTC
[ENA]
¡û
>W1810367307
PVXL01000067
Bacillota
Moorella stamsii DSM 26271 [PVXL]
1681
1755
+
Glu
TTC
[ENA]
¡û
>W1810367344
PVXM01000028
Bacillota
Moorella humiferrea DSM 23265 [PVXM]
26177
26103
-
Glu
TTC
[ENA]
¡û
>C151094343
CP012369
Bacillota
Moorella thermoacetica DSM 521 [CP012369]
99181
99255
+
Glu
TTC
-
¡û
>C151094368
CP012369
Bacillota
Moorella thermoacetica DSM 521 [CP012369]
2318063
2318137
+
Glu
TTC
-
¡û
>C151094393
CP012370
Bacillota
Moorella thermoacetica DSM 2955 [CP012370]
99180
99254
+
Glu
TTC
-
¡û
>C151094419
CP012370
Bacillota
Moorella thermoacetica DSM 2955 [CP012370]
2413848
2413922
+
Glu
TTC
-
¡û
>W1510100284
CELZ01000057
Bacillota
Moorella glycerini NMP [CELZ]
115662
115588
-
Glu
TTC
[ENA]
¡û
>W1610925271
LTBC01000001
Bacillota
Moorella mulderi DSM 14980 [LTBC]
243532
243606
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK