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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.355696 (99 seq.)
>A171001201
CP001868
Euryarchaeota
Haloferax mediterranei ATCC 33500 CGMCC 1.2087 [CP001868]
310580
310507
-
Asp
GTC
-
¡û
>A171001202
CP001868
Euryarchaeota
Haloferax mediterranei ATCC 33500 CGMCC 1.2087 [CP001868]
310478
310405
-
Asp
GTC
-
¡û
>A171001316
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
2195989
2195917
-
Asp
GTC
-
¡û
>A171001317
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
2195383
2195310
-
Asp
GTC
-
¡û
>A171001424
CP001956
Euryarchaeota
Haloferax volcanii DS2 [CP001956]
311827
311754
-
Asp
GTC
-
¡û
>A171001425
CP001956
Euryarchaeota
Haloferax volcanii DS2 [CP001956]
311725
311653
-
Asp
GTC
-
¡û
>A171002476
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
971811
971738
-
Asp
GTC
-
¡û
>A171002477
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
971552
971480
-
Asp
GTC
-
¡û
>A171002478
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
968670
968598
-
Asp
GTC
-
¡û
>WENV170008739
APHM01003503
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
1181
1109
-
Asp
GTC
[ENA]
¢þ
>WENV170008808
APHM01007583
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
488
414
-
Asp
GTC
[ENA]
¢þ
>WENV170009049
APHM01020900
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
2260
2333
+
Asp
GTC
[ENA]
¢þ
>At1712
CR936257
Euryarchaeota
Natronomonas pharaonis DSM 2160 Gabara [CR936257]
437996
437924
-
Asp
GTC
[Ensembl]
¡û
>WENV170661114
JXWU01108157
[JXWU] soil metagenome; rice field; organic control Plot
482
554
+
Asp
GTC
[ENA]
¢þ
>WENV170701961
LKMJ01000154
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
13327
13255
-
Asp
GTC
[ENA]
¢þ
>WENV170702153
LKMJ01000688
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
19745
19817
+
Asp
GTC
[ENA]
¢þ
>WENV170702227
LKMJ01000931
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
9080
9007
-
Asp
GTC
[ENA]
¢þ
>WENV170702330
LKMJ01001319
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
18283
18211
-
Asp
GTC
[ENA]
¢þ
>WENV170702403
LKMJ01001749
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
19402
19474
+
Asp
GTC
[ENA]
¢þ
>WENV170702934
LKMJ01004946
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
55
127
+
Asp
GTC
[ENA]
¢þ
>WENV170703164
LKMJ01007379
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1807
1881
+
Asp
GTC
[ENA]
¢þ
>WENV170703418
LKMJ01011238
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1992
1919
-
Asp
GTC
[ENA]
¢þ
>WENV170703645
LKMJ01014942
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4181
4254
+
Asp
GTC
[ENA]
¢þ
>W1910011013
BDJH01000002
Euryarchaeota
Salella cibi CBA1134 [BDJH]
1613219
1613292
+
Asp
GTC
[ENA]
¡û
>W1910186233
CCDK010000002
Euryarchaeota
Haloferax prahovense Arc-Hr [CCDK]
909799
909726
-
Asp
GTC
[ENA]
¡û
>W1910186234
CCDK010000002
Euryarchaeota
Haloferax prahovense Arc-Hr [CCDK]
909697
909625
-
Asp
GTC
[ENA]
¡û
>W1910193547
CSTE01000002
Euryarchaeota
Haloferax massiliensis Arc-Hr [CSTE]
1747547
1747620
+
Asp
GTC
[ENA]
¡û
>W1910193548
CSTE01000002
Euryarchaeota
Haloferax massiliensis Arc-Hr [CSTE]
1747649
1747722
+
Asp
GTC
[ENA]
¡û
>W1910227053
FNIA01000011
Euryarchaeota
Haloarchaeobius iranensis EB21,IBRC-M 10013,KCTC 4048 [FNIA]
27387
27315
-
Asp
GTC
[ENA]
¡û
>W1910227054
FNIA01000011
Euryarchaeota
Haloarchaeobius iranensis EB21,IBRC-M 10013,KCTC 4048 [FNIA]
26537
26465
-
Asp
GTC
[ENA]
¡û
>W1910227109
FNKQ01000003
Euryarchaeota
Halopelagius longus CGMCC 1.12397 [FNKQ]
459985
460058
+
Asp
GTC
[ENA]
¡û
>W1910227110
FNKQ01000003
Euryarchaeota
Halopelagius longus CGMCC 1.12397 [FNKQ]
460362
460435
+
Asp
GTC
[ENA]
¡û
>W1910228428
FNPB01000005
Euryarchaeota
Halobellus clavatus CGMCC 1.10118 [FNPB]
80508
80580
+
Asp
GTC
[ENA]
¡û
>W1910228429
FNPB01000005
Euryarchaeota
Halobellus clavatus CGMCC 1.10118 [FNPB]
80600
80674
+
Asp
GTC
[ENA]
¡û
>W1910229812
FOFD01000003
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
571428
571355
-
Asp
GTC
[ENA]
¡û
>W1910229813
FOFD01000003
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
571090
571017
-
Asp
GTC
[ENA]
¡û
>W1910229915
FOIC01000011
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
28530
28603
+
Asp
GTC
[ENA]
¡û
>W1910230262
FOKW01000013
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
66834
66906
+
Asp
GTC
[ENA]
¡û
>W1910230354
FOOQ01000001
Euryarchaeota
Halopelagius inordinatus CGMCC 1.7739 [FOOQ]
294558
294486
-
Asp
GTC
[ENA]
¡û
>W1910230355
FOOQ01000001
Euryarchaeota
Halopelagius inordinatus CGMCC 1.7739 [FOOQ]
291946
291873
-
Asp
GTC
[ENA]
¡û
>W1910230504
FOTC01000003
Euryarchaeota
Halogranum rubrum CGMCC 1.7738 [FOTC]
57990
57918
-
Asp
GTC
[ENA]
¡û
>W1910230505
FOTC01000003
Euryarchaeota
Halogranum rubrum CGMCC 1.7738 [FOTC]
57147
57074
-
Asp
GTC
[ENA]
¡û
>W1910230506
FOTC01000003
Euryarchaeota
Halogranum rubrum CGMCC 1.7738 [FOTC]
57027
56953
-
Asp
GTC
[ENA]
¡û
>W1910646125
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
3003701
3003774
+
Asp
GTC
[ENA]
¡û
>W1910646126
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
3004149
3004222
+
Asp
GTC
[ENA]
¡û
>W1911493138
OBEJ01000001
Euryarchaeota
Natronoarchaeum philippinense DSM 27208 [OBEJ]
1093553
1093480
-
Asp
GTC
[ENA]
¡û
>W1911493139
OBEJ01000001
Euryarchaeota
Natronoarchaeum philippinense DSM 27208 [OBEJ]
1092013
1091941
-
Asp
GTC
[ENA]
¡û
>W1911630019
PSYX01000001
Euryarchaeota
Haloferax sp. Atlit-10N [PSYX]
60583
60510
-
Asp
GTC
[ENA]
¡û
>W1911630020
PSYX01000001
Euryarchaeota
Haloferax sp. Atlit-10N [PSYX]
60481
60409
-
Asp
GTC
[ENA]
¡û
>W1911630071
PSYY01000001
Euryarchaeota
Haloferax sp. Atlit-4N [PSYY]
374489
374416
-
Asp
GTC
[ENA]
¡û
>W1911630072
PSYY01000001
Euryarchaeota
Haloferax sp. Atlit-4N [PSYY]
374386
374314
-
Asp
GTC
[ENA]
¡û
>W1911655729
QEQJ01000001
Euryarchaeota
Haloferax sp. Atlit-6N [QEQJ]
1374004
1374077
+
Asp
GTC
[ENA]
¡û
>W1911655730
QEQJ01000001
Euryarchaeota
Haloferax sp. Atlit-6N [QEQJ]
1374107
1374179
+
Asp
GTC
[ENA]
¡û
>W1911696814
QNGA01000001
Euryarchaeota
halophilic archaeon H22 [QNGA]
599253
599181
-
Asp
GTC
[ENA]
¡û
>W1911709500
QPLO01000001
Euryarchaeota
Haloferax sp. Atlit-109R [QPLO]
385716
385643
-
Asp
GTC
[ENA]
¡û
>W1911709501
QPLO01000001
Euryarchaeota
Haloferax sp. Atlit-109R [QPLO]
385614
385542
-
Asp
GTC
[ENA]
¡û
>W1911709871
QPMJ01000001
Euryarchaeota
Halorussus rarus TBN4 [QPMJ]
4829
4756
-
Asp
GTC
[ENA]
¡û
>W1911709872
QPMJ01000001
Euryarchaeota
Halorussus rarus TBN4 [QPMJ]
4389
4317
-
Asp
GTC
[ENA]
¡û
>W1911749384
QWGG01000001
Euryarchaeota
Halosimplex salinum YPL4 [QWGG]
47224
47297
+
Asp
GTC
[ENA]
¡û
>W1911749407
QWGG01000003
Euryarchaeota
Halosimplex salinum YPL4 [QWGG]
230125
230050
-
Asp
GTC
[ENA]
¡û
>W1911769962
QXIJ01000002
Euryarchaeota
Halobellus sp. Atlit-38R [QXIJ]
39394
39467
+
Asp
GTC
[ENA]
¡û
>W1911769963
QXIJ01000002
Euryarchaeota
Halobellus sp. Atlit-38R [QXIJ]
39489
39562
+
Asp
GTC
[ENA]
¡û
>W1610003645
AGCY01000437
Euryarchaeota
halophilic archaeon J07HX64 [AGCY]
2260
2333
+
Asp
GTC
[ENA]
¡û
>W1610005888
ALJD01000004
Euryarchaeota
Halogranum salarium B-1 [ALJD]
16254
16182
-
Asp
GTC
[ENA]
¡û
>W1610005889
ALJD01000004
Euryarchaeota
Halogranum salarium B-1 [ALJD]
15270
15197
-
Asp
GTC
[ENA]
¡û
>W1610005890
ALJD01000004
Euryarchaeota
Halogranum salarium B-1 [ALJD]
15150
15075
-
Asp
GTC
[ENA]
¡û
>W1610011532
ANPG01000576
Euryarchaeota
Haloferax sp. BAB-2207 BAB2207 [ANPG]
849
776
-
Asp
GTC
[ENA]
¡û
>W1610011726
AOHS01000034
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
40379
40451
+
Asp
GTC
[ENA]
¡û
>W1610011727
AOHS01000034
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
40985
41058
+
Asp
GTC
[ENA]
¡û
>W1610012483
AOIM01000035
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
111486
111414
-
Asp
GTC
[ENA]
¡û
>W1610012484
AOIM01000035
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
110783
110711
-
Asp
GTC
[ENA]
¡û
>W1610012575
AOIO01000039
Euryarchaeota
Natrialba asiatica DSM 12278 [AOIO]
43022
43094
+
Asp
GTC
[ENA]
¡û
>W1610012806
AOIU01000013
Euryarchaeota
Halosimplex carlsbadense 2002/9/1 [AOIU]
259801
259874
+
Asp
GTC
[ENA]
¡û
>W1610012831
AOIU01000036
Euryarchaeota
Halosimplex carlsbadense 2002/9/1 [AOIU]
213787
213860
+
Asp
GTC
[ENA]
¡û
>W1610013470
AOLD01000031
Euryarchaeota
Haloferax sp. ATCC BAA-646 [AOLD]
182142
182215
+
Asp
GTC
[ENA]
¡û
>W1610013471
AOLD01000031
Euryarchaeota
Haloferax sp. ATCC BAA-646 [AOLD]
182244
182317
+
Asp
GTC
[ENA]
¡û
>W1610013540
AOLE01000023
Euryarchaeota
Haloferax sp. ATCC BAA-645 [AOLE]
182128
182201
+
Asp
GTC
[ENA]
¡û
>W1610013541
AOLE01000023
Euryarchaeota
Haloferax sp. ATCC BAA-645 [AOLE]
182230
182303
+
Asp
GTC
[ENA]
¡û
>W1610013736
AOLI01000025
Euryarchaeota
Haloferax larsenii JCM 13917 [AOLI]
69073
69000
-
Asp
GTC
[ENA]
¡û
>W1610013737
AOLI01000025
Euryarchaeota
Haloferax larsenii JCM 13917 [AOLI]
68971
68899
-
Asp
GTC
[ENA]
¡û
>W1610013755
AOLJ01000011
Euryarchaeota
Haloferax gibbonsii ATCC 33959 [AOLJ]
571101
571174
+
Asp
GTC
[ENA]
¡û
>W1610013756
AOLJ01000011
Euryarchaeota
Haloferax gibbonsii ATCC 33959 [AOLJ]
571204
571276
+
Asp
GTC
[ENA]
¡û
>W1610013815
AOLK01000011
Euryarchaeota
Haloferax elongans ATCC BAA-1513 [AOLK]
303805
303732
-
Asp
GTC
[ENA]
¡û
>W1610013816
AOLK01000011
Euryarchaeota
Haloferax elongans ATCC BAA-1513 [AOLK]
303703
303630
-
Asp
GTC
[ENA]
¡û
>W1610013932
AOLM01000018
Euryarchaeota
Haloferax sulfurifontis ATCC BAA-897 [AOLM]
220476
220549
+
Asp
GTC
[ENA]
¡û
>W1610013933
AOLM01000018
Euryarchaeota
Haloferax sulfurifontis ATCC BAA-897 [AOLM]
220578
220651
+
Asp
GTC
[ENA]
¡û
>W1610013971
AOLN01000011
Euryarchaeota
Haloferax mucosum ATCC BAA-1512 [AOLN]
150122
150195
+
Asp
GTC
[ENA]
¡û
>W1610013972
AOLN01000011
Euryarchaeota
Haloferax mucosum ATCC BAA-1512 [AOLN]
150224
150297
+
Asp
GTC
[ENA]
¡û
>W1610014415
AOLZ01000029
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
78010
78082
+
Asp
GTC
[ENA]
¡û
>W1610082976
CBMA010000024
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
20295
20222
-
Asp
GTC
[ENA]
¡û
>W1610082977
CBMA010000024
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
17602
17529
-
Asp
GTC
[ENA]
¡û
>W1610682528
LKNC01000002
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g1 [LKNC]
114
42
-
Asp
GTC
[ENA]
¡û
>W1610682647
LKNG01000007
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g8 [LKNG]
18317
18245
-
Asp
GTC
[ENA]
¡û
>W1610784290
LOEP01000016
Euryarchaeota
Haloferax sp. Q22 [LOEP]
191058
191131
+
Asp
GTC
[ENA]
¡û
>W1610784291
LOEP01000016
Euryarchaeota
Haloferax sp. Q22 [LOEP]
191160
191233
+
Asp
GTC
[ENA]
¡û
>W1610799834
LOPV01000094
Euryarchaeota
Haloferax profundi SB29 [LOPV]
8154
8227
+
Asp
GTC
[ENA]
¡û
>W1610799890
LOPW01000056
Euryarchaeota
Haloferax marisrubri SB3 [LOPW]
50817
50890
+
Asp
GTC
[ENA]
¡û
>W1610799891
LOPW01000056
Euryarchaeota
Haloferax marisrubri SB3 [LOPW]
50919
50991
+
Asp
GTC
[ENA]
¡û
>W1630000503
AOIO01000039
Euryarchaeota
Natrialba asiatica DSM 12278 [AOIO]
42402
42474
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK