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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.366782 (99 seq.)
>W1710861435
LMDP01000002
Alphaproteobacteria
Afipia sp. Root123D2 [LMDP]
755909
755834
-
Met
CAT
[ENA]
¡û
>W1710872704
LMME01000018
Alphaproteobacteria
Methylobacterium sp. Leaf85 [LMME]
9960
9885
-
Met
CAT
[ENA]
¡û
>W1710873208
LMMP01000051
Alphaproteobacteria
Methylobacterium sp. Leaf91 [LMMP]
2733
2658
-
Met
CAT
[ENA]
¡û
>W1710873533
LMMW01000002
Alphaproteobacteria
Methylobacterium sp. Leaf100 [LMMW]
19107
19032
-
Met
CAT
[ENA]
¡û
>W1710873613
LMMX01000037
Alphaproteobacteria
Methylobacterium sp. Leaf102 [LMMX]
356779
356854
+
Met
CAT
[ENA]
¡û
>W1710873693
LMMZ01000023
Alphaproteobacteria
Methylobacterium sp. Leaf104 [LMMZ]
443946
443871
-
Met
CAT
[ENA]
¡û
>W1710873881
LMND01000010
Alphaproteobacteria
Methylobacterium sp. Leaf108 [LMND]
78222
78147
-
Met
CAT
[ENA]
¡û
>W1710873911
LMNE01000002
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
118031
118106
+
Met
CAT
[ENA]
¡û
>W1710874029
LMNG01000030
Alphaproteobacteria
Methylobacterium sp. Leaf112 [LMNG]
408291
408366
+
Met
CAT
[ENA]
¡û
>W1710874167
LMNJ01000034
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
136784
136859
+
Met
CAT
[ENA]
¡û
>W1710874263
LMNL01000034
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
801978
802053
+
Met
CAT
[ENA]
¡û
>W1710874336
LMNN01000006
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
54435
54360
-
Met
CAT
[ENA]
¡û
>W1710874441
LMNP01000027
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
42710
42635
-
Met
CAT
[ENA]
¡û
>W1710874589
LMNS01000038
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
505678
505603
-
Met
CAT
[ENA]
¡û
>W1710874645
LMNU01000006
Alphaproteobacteria
Methylobacterium sp. Leaf125 [LMNU]
26017
25942
-
Met
CAT
[ENA]
¡û
>W1710878720
LMRE01000023
Alphaproteobacteria
Methylobacterium sp. Leaf469 [LMRE]
409174
409249
+
Met
CAT
[ENA]
¡û
>W1710893531
LNEV01000017
Alphaproteobacteria
Rhizobiales bacterium Ga0077545 [LNEV]
89800
89875
+
Met
CAT
[ENA]
¡û
>W1711073379
LSIM01000148
Alphaproteobacteria
Bradyrhizobium sp. CCH4-A6 [LSIM]
31121
31196
+
Met
CAT
[ENA]
¡û
>W1711073765
LSIX01000337
Alphaproteobacteria
Methylobacterium sp. CCH5-D2 [LSIX]
2226
2151
-
Met
CAT
[ENA]
¡û
>W1711169204
LVYV01000053
Alphaproteobacteria
Tardiphaga robiniae [LVYV]
50026
50101
+
Met
CAT
[ENA]
¡û
>W1711501149
MKRG01000081
Alphaproteobacteria
Afipia sp. 62-7 [MKRG]
8198
8273
+
Met
CAT
[ENA]
¡û
>W1711504237
MKUJ01000003
Alphaproteobacteria
Afipia sp. 64-13 [MKUJ]
12251
12326
+
Met
CAT
[ENA]
¡û
>W1711783529
MVOD01000019
Alphaproteobacteria
Rhodopseudomonas palustris [MVOD]
42843
42768
-
Met
CAT
[ENA]
¡û
>PL171000295
CP001007
Alphaproteobacteria
Methylobacterium radiotolerans JCM 2831 plasmid:pMRAD06
1453
1378
-
Met
CAT
[ENA]
¡û
>W131051726
AMXU01000032
Alphaproteobacteria
Methylobacterium sp. MB200 [AMXU]
31403
31478
+
Met
CAT
[ENA]
¡û
>W131159748
AQVT01000001
Alphaproteobacteria
Methylobacterium sp. 88A [AQVT]
2373028
2373103
+
Met
CAT
[ENA]
¡û
>C018985
BX571963
Alphaproteobacteria
Rhodopseudomonas palustris [BX571963]
1824830
1824905
+
Met
CAT
[Ensembl]
¡û
>C171064809
CP017640
Alphaproteobacteria
Methylobacterium sp. C1 [CP017640]
1857791
1857716
-
Met
CAT
-
¡û
>C171092148
CP019322
Alphaproteobacteria
Methylorubrum extorquens PSBB040 [CP019322]
3136610
3136685
+
Met
CAT
-
¡û
>C171115201
CP021054
Alphaproteobacteria
Methylorubrum zatmanii PSBB041 [CP021054]
5550842
5550767
-
Met
CAT
-
¡û
>W141007455
AGWX01000004
Alphaproteobacteria
Afipia broomeae ATCC 49717 [AGWX]
696366
696291
-
Met
CAT
[ENA]
¡û
>W141063766
APJF01000009
Alphaproteobacteria
Afipia sp. OHSU_I-C4 [APJF]
35187
35112
-
Met
CAT
[ENA]
¡û
>W141063797
APJG01000011
Alphaproteobacteria
Afipia sp. OHSU_I-uncloned [APJG]
35520
35445
-
Met
CAT
[ENA]
¡û
>W141063831
APJH01000004
Alphaproteobacteria
Afipia sp. OHSU_II-C2 [APJH]
85343
85418
+
Met
CAT
[ENA]
¡û
>W141063915
APJI01000030
Alphaproteobacteria
Afipia sp. OHSU_II-C1 [APJI]
77848
77923
+
Met
CAT
[ENA]
¡û
>W141093634
AVBL01000008
Alphaproteobacteria
Afipia sp. NBIMC_P1-C2 [AVBL]
58900
58975
+
Met
CAT
[ENA]
¡û
>W141093705
AVBM01000018
Alphaproteobacteria
Afipia sp. NBIMC_P1-C3 [AVBM]
52469
52394
-
Met
CAT
[ENA]
¡û
>W141103918
AVNX01000060
Alphaproteobacteria
Methylobacterium sp. L2-4 [AVNX]
10953
10878
-
Met
CAT
[ENA]
¡û
>W141103921
AVNX01000082
Alphaproteobacteria
Methylobacterium sp. L2-4 [AVNX]
3359
3284
-
Met
CAT
[ENA]
¡û
>W141194121
AYSU01000001
Alphaproteobacteria
Rhodopseudomonas palustris JSC-3b [AYSU]
17960
18035
+
Met
CAT
[ENA]
¡û
>W141222918
BACU01000642
Alphaproteobacteria
Azospirillum sp. B4 [BACU]
2670
2595
-
Met
CAT
[ENA]
¡û
>W141223377
BADE01000782
Alphaproteobacteria
Methylobacterium sp. B34 [BADE]
6429
6504
+
Met
CAT
[ENA]
¡û
>C08006509
CP000908
Alphaproteobacteria
Methylorubrum extorquens PA1 [CP000908]
3965467
3965395
-
Met
CAT
[Ensembl]
¡û
>W141277791
JAEV01000007
Alphaproteobacteria
Methylobacterium sp. 10 [JAEV]
439610
439535
-
Met
CAT
[ENA]
¡û
>WENV183636469
OOKD01004968
[OOKD] human gut metagenome; Skin biopsy
1037
962
-
Ile2
CAT
[ENA]
¢þ
>WENV170551246
CXWJ01002081
[CXWJ] wastewater metagenome; activated sludge
1241
1166
-
Met
CAT
[ENA]
¢þ
>WENV170577827
FSSH01001731
[FSSH] freshwater metagenome; drinking water
11842
11767
-
Met
CAT
[ENA]
¢þ
>C181155074
CP027526
Alphaproteobacteria
Magnetospirillum gryphiswaldense MSR-1 [CP027526]
3520728
3520803
+
Met
CAT
-
¡û
>C181155124
CP027527
Alphaproteobacteria
Magnetospirillum gryphiswaldense R3/S1 [CP027527]
3520728
3520803
+
Met
CAT
-
¡û
>C181175655
CP029173
Alphaproteobacteria
Methylobacterium sp. DM1 [CP029173]
4284617
4284542
-
Met
CAT
-
¡û
>W1910568879
JHAA01000002
Alphaproteobacteria
Rhodopseudomonas palustris PSBS [JHAA]
1278592
1278517
-
Met
CAT
[ENA]
¡û
>C09107438
CP001298
Alphaproteobacteria
Methylorubrum extorquens CM4 [CP001298]
4051502
4051427
-
Met
CAT
[Ensembl]
¡û
>W1911708564
QOWC01000061
Alphaproteobacteria
Methylobacterium crusticola MIMD6 [QOWC]
12668
12743
+
Met
CAT
[ENA]
¡û
>W1911760584
QWVU01000055
Alphaproteobacteria
Rhodopseudomonas palustris R1 [QWVU]
13617
13542
-
Met
CAT
[ENA]
¡û
>W1810079105
PEKQ01001124
Alphaproteobacteria
Methylobacterium radiotolerans KUT39 [PEKQ]
864
789
-
Met
CAT
[ENA]
¡û
>W1810487227
QAYK01000015
Alphaproteobacteria
Methylobacterium sp. GV104 [QAYK]
9283
9208
-
Met
CAT
[ENA]
¡û
>W1810573761
QEKZ01000005
Alphaproteobacteria
Methylobacterium organophilum DSM 760 [QEKZ]
7081
7008
-
Met
CAT
[ENA]
¡û
>W1810576941
QENW01000002
Alphaproteobacteria
Tardiphaga sp. OV697 [QENW]
911126
911201
+
Met
CAT
[ENA]
¡û
>W1810672331
QJTI01000035
Alphaproteobacteria
Rhodopseudomonas faecalis JCM 11668 [QJTI]
16875
16950
+
Met
CAT
[ENA]
¡û
>W1810784400
QRAQ01000006
Alphaproteobacteria
Tardiphaga sp. CF115 [QRAQ]
7585
7510
-
Met
CAT
[ENA]
¡û
>SRA1015778
SRR023846.195744
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
181
256
+
Met
CAT
[SRA]
>SRA1015901
SRR023846.249003
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
181
256
+
Met
CAT
[SRA]
>SRA1016006
SRR023846.306440
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
137
62
-
Met
CAT
[SRA]
>SRA1016079
SRR023846.339621
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
88
163
+
Met
CAT
[SRA]
>SRA1016351
SRR023846.461284
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
62
137
+
Met
CAT
[SRA]
>SRA1016465
SRR023846.511842
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
62
137
+
Met
CAT
[SRA]
>SRA1016515
SRR023846.540050
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
62
137
+
Met
CAT
[SRA]
>W10119574
ADVZ01000003
Alphaproteobacteria
Afipia sp. 1NLS2 [ADVZ]
408618
408693
+
Met
CAT
[ENA]
¡û
>C11116293
CP002821
Alphaproteobacteria
Afipia carboxidovorans OM4 [CP002821]
1056089
1056014
-
Met
CAT
[Ensembl]
¡û
>W11125840
ADVZ01000003
Alphaproteobacteria
Afipia sp. 1NLS2 [ADVZ]
408618
408693
+
Met
CAT
[ENA]
¡û
>W1511563271
LABX01000290
Alphaproteobacteria
Methylobacterium aquaticum DSM 16371 [LABX]
8836
8761
-
Met
CAT
[ENA]
¡û
>W1511563291
LABY01000034
Alphaproteobacteria
Methylobacterium variabile DSM 16961 [LABY]
18534
18609
+
Met
CAT
[ENA]
¡û
>W11168468
AFOF01000037
Alphaproteobacteria
Bradyrhizobiaceae bacterium SG-6C [AFOF]
97574
97499
-
Met
CAT
[ENA]
¡û
>W121081105
AKFK01000013
Alphaproteobacteria
Methylobacterium sp. GXF4 [AKFK]
31156
31081
-
Met
CAT
[ENA]
¡û
>W121081125
AKFK01000055
Alphaproteobacteria
Methylobacterium sp. GXF4 [AKFK]
95075
95000
-
Met
CAT
[ENA]
¡û
>W1610590547
LDRN01000031
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
37364
37439
+
Met
CAT
[ENA]
¡û
>W1610723781
LMDP01000002
Alphaproteobacteria
Afipia sp. Root123D2 [LMDP]
755909
755834
-
Met
CAT
[ENA]
¡û
>W1610735050
LMME01000018
Alphaproteobacteria
Methylobacterium sp. Leaf85 [LMME]
9960
9885
-
Met
CAT
[ENA]
¡û
>W1610735879
LMMW01000002
Alphaproteobacteria
Methylobacterium sp. Leaf100 [LMMW]
19107
19032
-
Met
CAT
[ENA]
¡û
>W1610735959
LMMX01000037
Alphaproteobacteria
Methylobacterium sp. Leaf102 [LMMX]
356779
356854
+
Met
CAT
[ENA]
¡û
>W1610736227
LMND01000010
Alphaproteobacteria
Methylobacterium sp. Leaf108 [LMND]
78222
78147
-
Met
CAT
[ENA]
¡û
>W1610736257
LMNE01000002
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
118031
118106
+
Met
CAT
[ENA]
¡û
>W1610736375
LMNG01000030
Alphaproteobacteria
Methylobacterium sp. Leaf112 [LMNG]
408291
408366
+
Met
CAT
[ENA]
¡û
>W1610736513
LMNJ01000034
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
136784
136859
+
Met
CAT
[ENA]
¡û
>W1610736609
LMNL01000034
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
801978
802053
+
Met
CAT
[ENA]
¡û
>W1610736682
LMNN01000006
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
54435
54360
-
Met
CAT
[ENA]
¡û
>W1610736787
LMNP01000027
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
42710
42635
-
Met
CAT
[ENA]
¡û
>W1610736935
LMNS01000038
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
505678
505603
-
Met
CAT
[ENA]
¡û
>W1610753797
LNEV01000017
Alphaproteobacteria
Rhizobiales bacterium Ga0077545 [LNEV]
89800
89875
+
Met
CAT
[ENA]
¡û
>W1610912684
LSIM01000148
Alphaproteobacteria
Bradyrhizobium sp. CCH4-A6 [LSIM]
31121
31196
+
Met
CAT
[ENA]
¡û
>W1610913070
LSIX01000337
Alphaproteobacteria
Methylobacterium sp. CCH5-D2 [LSIX]
2226
2151
-
Met
CAT
[ENA]
¡û
>W1610978999
LVYV01000053
Alphaproteobacteria
Tardiphaga robiniae [LVYV]
50026
50101
+
Met
CAT
[ENA]
¡û
>W1710539433
FNVI01000040
Alphaproteobacteria
Methylobacterium sp. 190mf [FNVI]
25295
25220
-
Met
CAT
[ENA]
¡û
>W1710539435
FNVI01000053
Alphaproteobacteria
Methylobacterium sp. 190mf [FNVI]
10107
10182
+
Met
CAT
[ENA]
¡û
>W1710540272
FNWP01000030
Alphaproteobacteria
Methylobacterium sp. 275MFSha3.1 [FNWP]
55878
55953
+
Met
CAT
[ENA]
¡û
>W1710567574
FOSV01000050
Alphaproteobacteria
Methylorubrum salsuginis [FOSV]
1827
1752
-
Met
CAT
[ENA]
¡û
>W1710568448
FOTP01000009
Alphaproteobacteria
Bradyrhizobium sp. NFR13 [FOTP]
13424
13349
-
Met
CAT
[ENA]
¡û
>W1710582170
FPKU01000001
Alphaproteobacteria
Devosia enhydra [FPKU]
762366
762291
-
Met
CAT
[ENA]
¡û
>W1710709827
LDRN01000031
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
37364
37439
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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