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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.371140 (32 seq.)
>W1710978631
LPMZ01000058
Betaproteobacteria
Burkholderia ubonensis [LPMZ]
53599
53671
+
Glu
TTC
[ENA]
¡û
>W131046062
AMSB01000002
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os34 [AMSB]
299132
299057
-
Glu
TTC
[ENA]
¡û
>W131046063
AMSB01000002
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os34 [AMSB]
299001
298926
-
Glu
TTC
[ENA]
¡û
>W131046065
AMSB01000002
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os34 [AMSB]
298559
298484
-
Glu
TTC
[ENA]
¡û
>W1711430739
MIJG01000008
Betaproteobacteria
Herbaspirillum camelliae WT00C [MIJG]
1355125
1355050
-
Glu
TTC
[ENA]
¡û
>W1711430740
MIJG01000008
Betaproteobacteria
Herbaspirillum camelliae WT00C [MIJG]
1354993
1354918
-
Glu
TTC
[ENA]
¡û
>W1711430742
MIJG01000008
Betaproteobacteria
Herbaspirillum camelliae WT00C [MIJG]
1354550
1354475
-
Glu
TTC
[ENA]
¡û
>W141223515
BADI01001173
Betaproteobacteria
Herbaspirillum sp. B65 [BADI]
393
468
+
Glu
TTC
[ENA]
¡û
>WENV183730252
PJTR01007408
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
736
661
-
Glu
TTC
[ENA]
¢þ
>WENV183730253
PJTR01007408
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
604
529
-
Glu
TTC
[ENA]
¢þ
>WENV183736632
PJUC01027401
[PJUC] soil metagenome; Soil enriched on filter paper
59
134
+
Glu
TTC
[ENA]
¢þ
>WENV183738432
PJUD01204974
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
139
64
-
Glu
TTC
[ENA]
¢þ
>ENV08001396
ABMY01000188
fish metagenome; microbial fraction from gut contents of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish were sick at time of sampling
87
12
-
Glu
TTC
[ENA]
¡û
>C181053492
CP021652
Betaproteobacteria
Ralstonia solanacearum RS 488 [CP021652]
1708181
1708256
+
Glu
TTC
-
¡û
>C181053495
CP021652
Betaproteobacteria
Ralstonia solanacearum RS 488 [CP021652]
1708671
1708746
+
Glu
TTC
-
¡û
>C191124262
CP034395
Betaproteobacteria
Herbaspirillum seropedicae AU13965 [CP034395]
3353607
3353532
-
Glu
TTC
-
¡û
>C191124264
CP034395
Betaproteobacteria
Herbaspirillum seropedicae AU13965 [CP034395]
3353273
3353198
-
Glu
TTC
-
¡û
>C191156651
CP037993
Betaproteobacteria
Herbaspirillum huttiense NFYY 53159 [CP037993]
3528046
3527971
-
Glu
TTC
-
¡û
>C191156652
CP037993
Betaproteobacteria
Herbaspirillum huttiense NFYY 53159 [CP037993]
3527914
3527839
-
Glu
TTC
-
¡û
>C191156654
CP037993
Betaproteobacteria
Herbaspirillum huttiense NFYY 53159 [CP037993]
3527611
3527536
-
Glu
TTC
-
¡û
>W1910578302
JWJC01000014
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os44 [JWJC]
258678
258603
-
Glu
TTC
[ENA]
¡û
>W1910578303
JWJC01000014
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os44 [JWJC]
258547
258472
-
Glu
TTC
[ENA]
¡û
>W1910578305
JWJC01000014
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os44 [JWJC]
258104
258029
-
Glu
TTC
[ENA]
¡û
>W1810194066
PKOI01000022
Betaproteobacteria
Herbaspirillum sp. BH-1 [PKOI]
70192
70267
+
Glu
TTC
[ENA]
¡û
>W1810194068
PKOI01000022
Betaproteobacteria
Herbaspirillum sp. BH-1 [PKOI]
70526
70601
+
Glu
TTC
[ENA]
¡û
>C151087596
CP011930
Betaproteobacteria
Herbaspirillum seropedicae Z67 [CP011930]
3535499
3535424
-
Glu
TTC
[Ensembl]
¡û
>C151087597
CP011930
Betaproteobacteria
Herbaspirillum seropedicae Z67 [CP011930]
3535367
3535292
-
Glu
TTC
[Ensembl]
¡û
>C151087599
CP011930
Betaproteobacteria
Herbaspirillum seropedicae Z67 [CP011930]
3535063
3534988
-
Glu
TTC
[Ensembl]
¡û
>C161060469
CP013737
Betaproteobacteria
Herbaspirillum rubrisubalbicans M1 [CP013737]
3619947
3619872
-
Glu
TTC
[Ensembl]
¡û
>C161060470
CP013737
Betaproteobacteria
Herbaspirillum rubrisubalbicans M1 [CP013737]
3619816
3619741
-
Glu
TTC
[Ensembl]
¡û
>C161060472
CP013737
Betaproteobacteria
Herbaspirillum rubrisubalbicans M1 [CP013737]
3619513
3619438
-
Glu
TTC
[Ensembl]
¡û
>W1610834845
LPMZ01000058
Betaproteobacteria
Burkholderia ubonensis [LPMZ]
53599
53671
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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