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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400773 (102 seq.)
>A171004357
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
3692661
3692732
+
Thr
GGT
-
¡û
>A171004527
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
2786229
2786157
-
Thr
GGT
-
¡û
>A171004577
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
1245377
1245449
+
Thr
GGT
-
¡û
>A171004630
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
2670697
2670768
+
Thr
GGT
-
¡û
>A171004686
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
3456805
3456734
-
Thr
GGT
-
¡û
>A171004762
CP009505
Euryarchaeota
Methanosarcina sp. MTP4 [CP009505]
709330
709259
-
Thr
GGT
-
¡û
>A171004787
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
4369037
4369108
+
Thr
GGT
-
¡û
>A171004840
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
4295298
4295369
+
Thr
GGT
-
¡û
>A171004896
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
4752707
4752778
+
Thr
GGT
-
¡û
>A171004972
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
677269
677197
-
Thr
GGT
-
¡û
>A171005024
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
647673
647601
-
Thr
GGT
-
¡û
>A171005076
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
674914
674842
-
Thr
GGT
-
¡û
>A171005128
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
651351
651280
-
Thr
GGT
-
¡û
>A171005181
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
680062
679991
-
Thr
GGT
-
¡û
>A171005287
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
762562
762491
-
Thr
GGT
-
¡û
>A171005326
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
3491702
3491631
-
Thr
GGT
-
¡û
>A171005440
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
1127215
1127144
-
Thr
GGT
-
¡û
>A171005497
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
1106454
1106383
-
Thr
GGT
-
¡û
>A171005512
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
1043369
1043440
+
Thr
GGT
-
¡û
>A171005578
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
3704182
3704253
+
Thr
GGT
-
¡û
>A171005627
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
3622240
3622311
+
Thr
GGT
-
¡û
>WENV170008130
AMZC01002563
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
1185
1257
+
Thr
GGT
[ENA]
¢þ
>At1427
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
5114096
5114025
-
Thr
GGT
[Ensembl]
¡û
>At1469
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
147670
147599
-
Thr
GGT
[Ensembl]
¡û
>At1509
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
912808
912879
+
Thr
GGT
[Ensembl]
¡û
>WENV170687869
LFRM01214605
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
18870
18942
+
Thr
GGT
[ENA]
¢þ
>WENV170784351
MCHG01000978
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
734
663
-
Thr
GGT
[ENA]
¢þ
>W1910230882
FPAO01000003
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
104225
104297
+
Thr
GGT
[ENA]
¡û
>W1910569236
JJOR01000065
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
18892
18964
+
Thr
GGT
[ENA]
¡û
>W1910569295
JJOS01000050
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
18913
18985
+
Thr
GGT
[ENA]
¡û
>W1910569369
JJOT01000098
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
61917
61989
+
Thr
GGT
[ENA]
¡û
>W1910569384
JJOU01000021
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
1637
1566
-
Thr
GGT
[ENA]
¡û
>W1910569429
JJOV01000001
Euryarchaeota
Methanosarcina sp. 2.H.A.1B.4 [JJOV]
17792
17863
+
Thr
GGT
[ENA]
¡û
>W1910569521
JJOW01000273
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.15 [JJOW]
4851
4922
+
Thr
GGT
[ENA]
¡û
>W1910569548
JJOX01000065
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.3 [JJOX]
16022
15951
-
Thr
GGT
[ENA]
¡û
>W1910569589
JJOY01000005
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.6 [JJOY]
17115
17044
-
Thr
GGT
[ENA]
¡û
>W1910569645
JJOZ01000017
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.8 [JJOZ]
176443
176514
+
Thr
GGT
[ENA]
¡û
>W1910569707
JJPA01000148
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
2067
1995
-
Thr
GGT
[ENA]
¡û
>W1910569740
JJPB01000027
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
1451
1380
-
Thr
GGT
[ENA]
¡û
>W1910569786
JJPC01000013
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
2073
2001
-
Thr
GGT
[ENA]
¡û
>W1910569857
JJPD01000112
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
9429
9358
-
Thr
GGT
[ENA]
¡û
>W1910569906
JJPE01000061
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
1603
1532
-
Thr
GGT
[ENA]
¡û
>W1910569982
JJPF01000121
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
9429
9358
-
Thr
GGT
[ENA]
¡û
>W1910569993
JJPG01000006
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
9439
9368
-
Thr
GGT
[ENA]
¡û
>W1910570090
JJPH01000142
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
9432
9361
-
Thr
GGT
[ENA]
¡û
>W1910570130
JJPI01000104
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
18891
18963
+
Thr
GGT
[ENA]
¡û
>W1910570147
JJPJ01000030
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
495
423
-
Thr
GGT
[ENA]
¡û
>W1910570197
JJPK01000013
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
2335
2263
-
Thr
GGT
[ENA]
¡û
>W1910570251
JJPL01000044
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
2068
1996
-
Thr
GGT
[ENA]
¡û
>W1910570305
JJPM01000062
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
2859
2787
-
Thr
GGT
[ENA]
¡û
>W1910570396
JJPN01000180
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
73420
73491
+
Thr
GGT
[ENA]
¡û
>W1910570442
JJPO01000145
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
62982
63054
+
Thr
GGT
[ENA]
¡û
>W1910570469
JJPP01000057
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
18913
18985
+
Thr
GGT
[ENA]
¡û
>W1910570521
JJPQ01000081
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
1502
1431
-
Thr
GGT
[ENA]
¡û
>W1910570559
JJPR01000029
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
2065
1993
-
Thr
GGT
[ENA]
¡û
>W1910570630
JJPS01000168
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
393
465
+
Thr
GGT
[ENA]
¡û
>W1910570666
JJPT01000045
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
18913
18985
+
Thr
GGT
[ENA]
¡û
>W1910570732
JJPU01000141
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
18914
18986
+
Thr
GGT
[ENA]
¡û
>W1910570789
JJPV01000110
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
18913
18985
+
Thr
GGT
[ENA]
¡û
>W1910570840
JJPW01000086
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
18914
18986
+
Thr
GGT
[ENA]
¡û
>W1910570889
JJPX01000142
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
2065
1993
-
Thr
GGT
[ENA]
¡û
>W1910570909
JJPY01000022
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
9437
9366
-
Thr
GGT
[ENA]
¡û
>W1910570971
JJPZ01000044
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
47106
47177
+
Thr
GGT
[ENA]
¡û
>W1910571050
JJQA01000122
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
21911
21839
-
Thr
GGT
[ENA]
¡û
>W1910571092
JJQB01000117
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
3008
2936
-
Thr
GGT
[ENA]
¡û
>W1910571120
JJQC01000070
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
84043
84115
+
Thr
GGT
[ENA]
¡û
>W1910571200
JJQD01000218
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
13815
13887
+
Thr
GGT
[ENA]
¡û
>W1910571224
JJQE01000097
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
9510
9439
-
Thr
GGT
[ENA]
¡û
>W1910571303
JJQF01000140
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
2072
2000
-
Thr
GGT
[ENA]
¡û
>W1910571306
JJQG01000015
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
18914
18986
+
Thr
GGT
[ENA]
¡û
>W1910571387
JJQH01000148
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
18914
18986
+
Thr
GGT
[ENA]
¡û
>W1910571457
JJQI01000119
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
2065
1993
-
Thr
GGT
[ENA]
¡û
>W1910571490
JJQJ01000147
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
19280
19352
+
Thr
GGT
[ENA]
¡û
>W1910571537
JJQK01000180
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
592
664
+
Thr
GGT
[ENA]
¡û
>W1910571571
JJQL01000015
Euryarchaeota
Methanosarcina sp. 1.H.A.2.2 [JJQL]
14914
14985
+
Thr
GGT
[ENA]
¡û
>W1910571657
JJQM01000098
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
18914
18986
+
Thr
GGT
[ENA]
¡û
>W1910571704
JJQN01000077
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
61602
61674
+
Thr
GGT
[ENA]
¡û
>W1910571796
JJQO01000371
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
2077
2005
-
Thr
GGT
[ENA]
¡û
>W1910571849
JJQP01000333
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
1392
1464
+
Thr
GGT
[ENA]
¡û
>W1910571869
JJQQ01000065
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
18913
18985
+
Thr
GGT
[ENA]
¡û
>W1910571927
JJQR01000082
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
72949
73021
+
Thr
GGT
[ENA]
¡û
>W1910571960
JJQS01000034
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
18914
18986
+
Thr
GGT
[ENA]
¡û
>W1910572046
JJQT01000239
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
18914
18986
+
Thr
GGT
[ENA]
¡û
>W1910572083
JJQU01000130
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
34333
34405
+
Thr
GGT
[ENA]
¡û
>W1910572130
JJQV01000073
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
18914
18986
+
Thr
GGT
[ENA]
¡û
>W1910572175
JJQW01000087
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
18900
18972
+
Thr
GGT
[ENA]
¡û
>W1910572205
JJQX01000012
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
19768
19840
+
Thr
GGT
[ENA]
¡û
>W1910572286
JJQY01000147
Euryarchaeota
Methanosarcina sp. 1.H.T.1A.1 [JJQY]
102451
102522
+
Thr
GGT
[ENA]
¡û
>W1910572296
JJQZ01000015
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
18914
18986
+
Thr
GGT
[ENA]
¡û
>W1910572355
JJRA01000028
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
18914
18986
+
Thr
GGT
[ENA]
¡û
>W1910572404
JJRB01000037
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
18914
18986
+
Thr
GGT
[ENA]
¡û
>W1910575034
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
220126
220198
+
Thr
GGT
[ENA]
¡û
>W1910635230
LMVP01000001
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
65237
65308
+
Thr
GGT
[ENA]
¡û
>W1910655395
LZPK01000161
Euryarchaeota
Methanosarcina sp. A14 [LZPK]
10988
10917
-
Thr
GGT
[ENA]
¡û
>W1910694814
MDTP02000285
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
732
661
-
Thr
GGT
[ENA]
¡û
>W1610000043
AAAR03000017
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
4671
4600
-
Thr
GGT
[ENA]
¡û
>W1610045119
BBBC01000077
Euryarchaeota
Methanosarcina mazei JCM 9314 [BBBC]
18934
19006
+
Thr
GGT
[ENA]
¡û
>W1610046885
BBCW01000009
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
107462
107533
+
Thr
GGT
[ENA]
¡û
>W1610048594
BBEF01000005
Euryarchaeota
Methanosarcina barkeri JCM 10043 [BBEF]
13485
13556
+
Thr
GGT
[ENA]
¡û
>W1610605105
LFRP01000025
Euryarchaeota
Methanosarcina sp. DTU009 [LFRP]
18870
18942
+
Thr
GGT
[ENA]
¡û
>W1610670264
LKAZ01000053
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
54835
54906
+
Thr
GGT
[ENA]
¡û
>W1610919902
LSRV01000013
Euryarchaeota
Methanolobus sp. T82-4 [LSRV]
5895
5824
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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