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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400784 (97 seq.)
>A171004371
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
2597880
2597807
-
Gly
TCC
-
¡û
>A171004528
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
2762697
2762624
-
Gly
TCC
-
¡û
>A171004578
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
1267893
1267966
+
Gly
TCC
-
¡û
>A171004655
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
720844
720771
-
Gly
TCC
-
¡û
>A171004707
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
689898
689825
-
Gly
TCC
-
¡û
>A171004763
CP009505
Euryarchaeota
Methanosarcina sp. MTP4 [CP009505]
655477
655404
-
Gly
TCC
-
¡û
>A171004788
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
4407754
4407827
+
Gly
TCC
-
¡û
>A171004841
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
4333985
4334058
+
Gly
TCC
-
¡û
>A171004897
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
4791221
4791294
+
Gly
TCC
-
¡û
>A171004973
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
645420
645347
-
Gly
TCC
-
¡û
>A171005025
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
618993
618920
-
Gly
TCC
-
¡û
>A171005077
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
624327
624254
-
Gly
TCC
-
¡û
>A171005129
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
617163
617090
-
Gly
TCC
-
¡û
>A171005182
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
650020
649947
-
Gly
TCC
-
¡û
>A171005288
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
720363
720290
-
Gly
TCC
-
¡û
>A171005314
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
3837944
3838017
+
Gly
TCC
-
¡û
>A171005421
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
3824349
3824276
-
Gly
TCC
-
¡û
>A171005551
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
724241
724168
-
Gly
TCC
-
¡û
>A171005563
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
753302
753375
+
Gly
TCC
-
¡û
>A171005648
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
2332449
2332376
-
Gly
TCC
-
¡û
>WENV180346440
OBLN01097962
[OBLN] sediment metagenome; sediment
190
119
-
Gly
TCC
[ENA]
¢þ
>WENV170008258
AMZC01006369
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
256
183
-
Gly
TCC
[ENA]
¢þ
>At1426
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
5064835
5064764
-
Gly
TCC
[Ensembl]
¡û
>At1434
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
466799
466870
+
Gly
TCC
[Ensembl]
¡û
>At1510
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
945297
945368
+
Gly
TCC
[Ensembl]
¡û
>WENV170687870
LFRM01214605
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
41386
41459
+
Gly
TCC
[ENA]
¢þ
>WENV170784212
MCHG01000126
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
18441
18512
+
Gly
TCC
[ENA]
¢þ
>W1910230883
FPAO01000003
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
126741
126814
+
Gly
TCC
[ENA]
¡û
>W1910569255
JJOR01000130
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
4078
4151
+
Gly
TCC
[ENA]
¡û
>W1910569303
JJOS01000066
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
4097
4170
+
Gly
TCC
[ENA]
¡û
>W1910569340
JJOT01000022
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
46124
46051
-
Gly
TCC
[ENA]
¡û
>W1910569381
JJOU01000020
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
19049
19122
+
Gly
TCC
[ENA]
¡û
>W1910569471
JJOV01000087
Euryarchaeota
Methanosarcina sp. 2.H.A.1B.4 [JJOV]
21291
21218
-
Gly
TCC
[ENA]
¡û
>W1910569484
JJOW01000092
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.15 [JJOW]
13727
13800
+
Gly
TCC
[ENA]
¡û
>W1910569575
JJOX01000091
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.3 [JJOX]
13727
13800
+
Gly
TCC
[ENA]
¡û
>W1910569651
JJOZ01000033
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.8 [JJOZ]
13727
13800
+
Gly
TCC
[ENA]
¡û
>W1910569730
JJPA01000250
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
4096
4169
+
Gly
TCC
[ENA]
¡û
>W1910569780
JJPB01000133
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
16434
16361
-
Gly
TCC
[ENA]
¡û
>W1910569821
JJPC01000117
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
4190
4263
+
Gly
TCC
[ENA]
¡û
>W1910569849
JJPD01000080
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
16422
16349
-
Gly
TCC
[ENA]
¡û
>W1910569915
JJPE01000094
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
16422
16349
-
Gly
TCC
[ENA]
¡û
>W1910569956
JJPF01000044
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
18830
18903
+
Gly
TCC
[ENA]
¡û
>W1910569991
JJPG01000004
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
16418
16345
-
Gly
TCC
[ENA]
¡û
>W1910570056
JJPH01000039
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
16421
16348
-
Gly
TCC
[ENA]
¡û
>W1910570093
JJPI01000012
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
3973
4046
+
Gly
TCC
[ENA]
¡û
>W1910570176
JJPJ01000074
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
3786
3859
+
Gly
TCC
[ENA]
¡û
>W1910570193
JJPK01000008
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
20610
20683
+
Gly
TCC
[ENA]
¡û
>W1910570278
JJPL01000130
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
4189
4262
+
Gly
TCC
[ENA]
¡û
>W1910570322
JJPM01000180
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
17260
17187
-
Gly
TCC
[ENA]
¡û
>W1910570392
JJPN01000156
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
19049
19122
+
Gly
TCC
[ENA]
¡û
>W1910570444
JJPO01000149
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
93454
93381
-
Gly
TCC
[ENA]
¡û
>W1910570448
JJPP01000015
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
4100
4173
+
Gly
TCC
[ENA]
¡û
>W1910570515
JJPQ01000047
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
16422
16349
-
Gly
TCC
[ENA]
¡û
>W1910570552
JJPR01000022
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
16509
16436
-
Gly
TCC
[ENA]
¡û
>W1910570622
JJPS01000117
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
13890
13963
+
Gly
TCC
[ENA]
¡û
>W1910570669
JJPT01000078
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
4783
4856
+
Gly
TCC
[ENA]
¡û
>W1910570739
JJPU01000168
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
13890
13963
+
Gly
TCC
[ENA]
¡û
>W1910570772
JJPV01000051
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
20427
20500
+
Gly
TCC
[ENA]
¡û
>W1910570828
JJPW01000053
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
3886
3959
+
Gly
TCC
[ENA]
¡û
>W1910570894
JJPX01000172
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
3982
4055
+
Gly
TCC
[ENA]
¡û
>W1910570930
JJPY01000067
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
16435
16362
-
Gly
TCC
[ENA]
¡û
>W1910570951
JJPZ01000007
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
19009
19082
+
Gly
TCC
[ENA]
¡û
>W1910571019
JJQA01000076
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
4010
4083
+
Gly
TCC
[ENA]
¡û
>W1910571069
JJQB01000040
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
6206
6279
+
Gly
TCC
[ENA]
¡û
>W1910571147
JJQC01000166
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
4005
4078
+
Gly
TCC
[ENA]
¡û
>W1910571156
JJQD01000024
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
4086
4159
+
Gly
TCC
[ENA]
¡û
>W1910571217
JJQE01000081
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
18830
18903
+
Gly
TCC
[ENA]
¡û
>W1910571256
JJQF01000032
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
4008
4081
+
Gly
TCC
[ENA]
¡û
>W1910571313
JJQG01000062
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
4220
4293
+
Gly
TCC
[ENA]
¡û
>W1910571396
JJQH01000190
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
4132
4205
+
Gly
TCC
[ENA]
¡û
>W1910571419
JJQI01000026
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
323182
323109
-
Gly
TCC
[ENA]
¡û
>W1910571471
JJQJ01000087
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
4100
4173
+
Gly
TCC
[ENA]
¡û
>W1910571521
JJQK01000054
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
3886
3959
+
Gly
TCC
[ENA]
¡û
>W1910571572
JJQL01000015
Euryarchaeota
Methanosarcina sp. 1.H.A.2.2 [JJQL]
65452
65525
+
Gly
TCC
[ENA]
¡û
>W1910571676
JJQM01000170
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
4078
4151
+
Gly
TCC
[ENA]
¡û
>W1910571721
JJQN01000132
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
3915
3988
+
Gly
TCC
[ENA]
¡û
>W1910571755
JJQO01000088
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
4085
4158
+
Gly
TCC
[ENA]
¡û
>W1910571821
JJQP01000160
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
431
504
+
Gly
TCC
[ENA]
¡û
>W1910571880
JJQQ01000104
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
25898
25825
-
Gly
TCC
[ENA]
¡û
>W1910571931
JJQR01000097
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
4087
4160
+
Gly
TCC
[ENA]
¡û
>W1910571975
JJQS01000061
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
4220
4293
+
Gly
TCC
[ENA]
¡û
>W1910572085
JJQU01000138
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
4035
4108
+
Gly
TCC
[ENA]
¡û
>W1910572142
JJQV01000104
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
104212
104139
-
Gly
TCC
[ENA]
¡û
>W1910572161
JJQW01000029
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
4150
4223
+
Gly
TCC
[ENA]
¡û
>W1910572222
JJQX01000094
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
22849
22776
-
Gly
TCC
[ENA]
¡û
>W1910572287
JJQY01000147
Euryarchaeota
Methanosarcina sp. 1.H.T.1A.1 [JJQY]
133231
133304
+
Gly
TCC
[ENA]
¡û
>W1910572387
JJRA01000121
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
56146
56073
-
Gly
TCC
[ENA]
¡û
>W1910572423
JJRB01000084
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
104233
104160
-
Gly
TCC
[ENA]
¡û
>W1910575035
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
254687
254760
+
Gly
TCC
[ENA]
¡û
>W1910635258
LMVP01000445
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
5450
5377
-
Gly
TCC
[ENA]
¡û
>W1910655370
LZPK01000006
Euryarchaeota
Methanosarcina sp. A14 [LZPK]
30673
30746
+
Gly
TCC
[ENA]
¡û
>W1910694775
MDTP02000052
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
49640
49711
+
Gly
TCC
[ENA]
¡û
>W1610000018
AAAR03000003
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
99983
99910
-
Gly
TCC
[ENA]
¡û
>W1610045108
BBBC01000046
Euryarchaeota
Methanosarcina mazei JCM 9314 [BBBC]
3878
3951
+
Gly
TCC
[ENA]
¡û
>W1610046894
BBCW01000025
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
425
498
+
Gly
TCC
[ENA]
¡û
>W1610605106
LFRP01000025
Euryarchaeota
Methanosarcina sp. DTU009 [LFRP]
41386
41459
+
Gly
TCC
[ENA]
¡û
>W1610670265
LKAZ01000053
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
104057
104128
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK