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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.401993 (20 seq.)
>A171002104
CP002588
Euryarchaeota
Archaeoglobus veneficus SNP6 [CP002588]
1556501
1556573
+
Ala
CGC
-
¡û
>A171003815
CP006577
Euryarchaeota
Archaeoglobus fulgidus DSM 8774 [CP006577]
1010704
1010775
+
Ala
CGC
-
¡û
>A171003829
CP006577
Euryarchaeota
Archaeoglobus fulgidus DSM 8774 [CP006577]
1951022
1950951
-
Ala
TGC
-
¡û
>WENV181408435
OGCH01003179
[OGCH] hot springs metagenome; hot springs
3296
3223
-
Ala
TGC
[ENA]
¢þ
>WENV181408946
OGCH01026296
[OGCH] hot springs metagenome; hot springs
815
886
+
Ala
CGC
[ENA]
¢þ
>At0615
AE000782
Euryarchaeota
Archaeoglobus fulgidus DSM 4304 [AE000782]
964112
964183
+
Ala
CGC
[Ensembl]
¡û
>At0644
AE000782
Euryarchaeota
Archaeoglobus fulgidus DSM 4304 [AE000782]
1788935
1788864
-
Ala
TGC
[Ensembl]
¡û
>WENV170675802
LDZQ01000583
[LDZQ] terrestrial metagenome; oil reservoir sample I2
24730
24801
+
Ala
CGC
[ENA]
¢þ
>WENV170675804
LDZQ01000584
[LDZQ] terrestrial metagenome; oil reservoir sample I2
8294
8221
-
Ala
TGC
[ENA]
¢þ
>WENV170676393
LDZR01002386
[LDZR] terrestrial metagenome; oil reservoir sample K2
10654
10725
+
Ala
CGC
[ENA]
¢þ
>WENV170676404
LDZR01002463
[LDZR] terrestrial metagenome; oil reservoir sample K2
327
254
-
Ala
TGC
[ENA]
¢þ
>WENV170779126
LZCG01001330
[LZCG] oil field metagenome; sample BH-FW-1 from oil reservoir
1273
1202
-
Ala
CGC
[ENA]
¢þ
>WENV170779192
LZQN01000006
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
14839
14910
+
Ala
CGC
[ENA]
¢þ
>WENV170779278
LZQN01000126
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
9933
10004
+
Ala
TGC
[ENA]
¢þ
>W1910200362
FJNF01000134
Euryarchaeota
Archaeoglobus fulgidus [FJNF]
11268
11339
+
Ala
CGC
[ENA]
¡û
>W1910200376
FJNF01000190
Euryarchaeota
Archaeoglobus fulgidus [FJNF]
62729
62658
-
Ala
TGC
[ENA]
¡û
>W1610612329
LGEQ01000010
Euryarchaeota
Archaeoglobus fulgidus [LGEQ]
24730
24801
+
Ala
CGC
[ENA]
¡û
>W1610612331
LGEQ01000011
Euryarchaeota
Archaeoglobus fulgidus [LGEQ]
8294
8221
-
Ala
TGC
[ENA]
¡û
>W1610612611
LGEX01000028
Euryarchaeota
Archaeoglobus fulgidus [LGEX]
10654
10725
+
Ala
CGC
[ENA]
¡û
>W1610612622
LGEX01000105
Euryarchaeota
Archaeoglobus fulgidus [LGEX]
327
254
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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