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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.403670 (16 seq.)
>WENV181228704
OFEH01001369
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
1787
1858
+
Ala
TGC
[ENA]
¢þ
>WENV181407568
OGCG01042836
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
75
4
-
Ala
TGC
[ENA]
¢þ
>WENV181407586
OGCG01044327
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
703
632
-
Ala
TGC
[ENA]
¢þ
>C08005593
CP001130
Aquificota
Hydrogenobaculum sp. Y04AAS1 [CP001130]
1252494
1252423
-
Ala
TGC
[Ensembl]
¡û
>C08005600
CP001130
Aquificota
Hydrogenobaculum sp. Y04AAS1 [CP001130]
789572
789501
-
Ala
TGC
[Ensembl]
¡û
>W09107144
ABFI01000022
Aquificota
Hydrogenobaculum sp. Y04AAS1 [ABFI]
16428
16499
+
Ala
TGC
[ENA]
¡û
>C151003664
CP002726
Aquificota
Hydrogenobaculum sp. 3684 [CP002726]
1243639
1243568
-
Ala
TGC
[Ensembl]
¡û
>C151003669
CP002726
Aquificota
Hydrogenobaculum sp. 3684 [CP002726]
775547
775476
-
Ala
TGC
[Ensembl]
¡û
>C151003708
CP002809
Aquificota
Hydrogenobaculum sp. SHO [CP002809]
1243509
1243438
-
Ala
TGC
[Ensembl]
¡û
>C151003713
CP002809
Aquificota
Hydrogenobaculum sp. SHO [CP002809]
775602
775531
-
Ala
TGC
[Ensembl]
¡û
>W10115216
ADJO01000021
Aquificota
Hydrogenobaculum sp. SN [ADJO]
3246
3175
-
Ala
TGC
[ENA]
¡û
>W11118802
ADJO01000021
Aquificota
Hydrogenobaculum sp. SN [ADJO]
3246
3175
-
Ala
TGC
[ENA]
¡û
>C131013403
CP004347
Aquificota
Hydrogenobaculum sp. HO [CP004347]
1243833
1243762
-
Ala
TGC
[Ensembl]
¡û
>C131013408
CP004347
Aquificota
Hydrogenobaculum sp. HO [CP004347]
775575
775504
-
Ala
TGC
[Ensembl]
¡û
>C131013715
CP004390
Aquificota
Hydrogenobaculum sp. SN [CP004390]
1243796
1243725
-
Ala
TGC
[Ensembl]
¡û
>C131013720
CP004390
Aquificota
Hydrogenobaculum sp. SN [CP004390]
775541
775470
-
Ala
TGC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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