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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.409463 (97 seq.)
>W1710862888
LMER01000014
Actinomycetota
Angustibacter sp. Root456 [LMER]
415173
415101
-
Val
CAC
[ENA]
¡û
>W1710914195
LNTD01000229
Actinomycetota
Cellulomonas sp. B6 [LNTD]
19855
19929
+
Val
CAC
[ENA]
¡û
>W1711134997
LUYL01000013
Actinomycetota
Actinomycetales bacterium Actino_01 [LUYL]
126367
126293
-
Val
CAC
[ENA]
¡û
>W131217106
ATWL01000001
Actinomycetota
Ruania albidiflava DSM 18029 [ATWL]
87956
87884
-
Val
CAC
[ENA]
¡û
>W1711326366
MBFF02000891
Actinomycetota
Modestobacter sp. VKM Ac-2676 [MBFF]
373
299
-
Val
CAC
[ENA]
¡û
>W1711503093
MKTH01000014
Actinomycetota
Cellulomonas sp. 73-92 [MKTH]
150236
150310
+
Val
CAC
[ENA]
¡û
>W1711503144
MKTI01000010
Actinomycetota
Cellulomonas sp. 73-145 [MKTI]
27493
27565
+
Val
CAC
[ENA]
¡û
>W1711505517
MKVO01000011
Actinomycetota
Micrococcales bacterium 73-15 [MKVO]
287985
288059
+
Val
CAC
[ENA]
¡û
>W1712056176
NFZP01000044
Actinomycetota
Cellulomonas iranensis [NFZP]
28448
28374
-
Val
CAC
[ENA]
¡û
>WENV180331386
OBLA01023532
[OBLA] soil metagenome; Alaskan Permafrost
135
209
+
Val
CAC
[ENA]
¢þ
>WENV180690538
OCZS010010111
[OCZS] soil metagenome; soil
457
384
-
Val
CAC
[ENA]
¢þ
>W141153002
AXCW01000031
Actinomycetota
Actinotalea ferrariae CF5-4 [AXCW]
9085
9011
-
Val
CAC
[ENA]
¡û
>W141241272
CAHD01000200
Actinomycetota
Cellulomonas massiliensis JC225 [CAHD]
35369
35443
+
Val
CAC
[ENA]
¡û
>W141259281
CBYP010000006
Actinomycetota
Candidatus Blastococcus massiliensis AP3 [CBYP]
19949
19875
-
Val
CAC
[ENA]
¡û
>WENV183716236
PDWI01296237
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
513
440
-
Val
CAC
[ENA]
¢þ
>WENV183717703
PDWJ01001417
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
30849
30776
-
Val
CAC
[ENA]
¢þ
>WENV183726940
PJTO01000724
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
8002
8076
+
Val
CAC
[ENA]
¢þ
>WENV183728466
PJTQ01000063
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
62835
62909
+
Val
CAC
[ENA]
¢þ
>WENV183729762
PJTR01000058
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
150615
150541
-
Val
CAC
[ENA]
¢þ
>WENV183731670
PJTT01000088
[PJTT] soil metagenome; Soil (2) enriched on wood chips
150615
150541
-
Val
CAC
[ENA]
¢þ
>WENV183731949
PJTU01000016
[PJTU] soil metagenome; Soil enriched on wood chips: beechwood xylan treatment
150615
150541
-
Val
CAC
[ENA]
¢þ
>WENV183732225
PJTW01000007
[PJTW] soil metagenome; Soil enriched on wood chips
150615
150541
-
Val
CAC
[ENA]
¢þ
>WENV183734845
PJUA01000053
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
114035
114107
+
Val
CAC
[ENA]
¢þ
>WENV183736299
PJUC01000480
[PJUC] soil metagenome; Soil enriched on filter paper
13004
12932
-
Val
CAC
[ENA]
¢þ
>WENV183739867
PJUF01000034
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
149624
149550
-
Val
CAC
[ENA]
¢þ
>WENV183743123
PJUJ01000045
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
10285
10359
+
Val
CAC
[ENA]
¢þ
>WENV183744673
PJUL01000059
[PJUL] feces metagenome; Chicken feces enriched on filter paper
150615
150541
-
Val
CAC
[ENA]
¢þ
>WENV183746624
POYE01038460
[POYE] biofilm metagenome; steel pipe from biofilm reactor
73
1
-
Val
CAC
[ENA]
¢þ
>W141428862
JEOE01000001
Actinomycetota
Cellulomonas sp. HZM [JEOE]
22385
22459
+
Val
CAC
[ENA]
¡û
>WENV170671477
LAHU01064008
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
504
430
-
Val
CAC
[ENA]
¢þ
>W09108539
ABTJ01000013
Actinomycetota
Cellulomonas flavigena DSM 20109 [ABTJ]
9902
9828
-
Val
CAC
[ENA]
¡û
>WENV170961699
MLJW01000559
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
11747
11675
-
Val
CAC
[ENA]
¢þ
>C181052433
CP021430
Actinomycetota
Cellulomonas sp. PSBB021 [CP021430]
1179434
1179360
-
Val
CAC
-
¡û
>C181173020
CP029049
Actinomycetota
Miniimonas sp. S16 [CP029049]
259605
259532
-
Val
CAC
-
¡û
>C191104255
CP033325
Actinomycetota
Georgenia faecalis ZLJ0423 [CP033325]
1872930
1872856
-
Val
CAC
-
¡û
>C191125310
CP034438
Actinomycetota
Flaviflexus salsibiostraticola KCTC 33148 [CP034438]
396079
396007
-
Val
CAC
-
¡û
>C191128011
CP034593
Actinomycetota
Flaviflexus ciconiae H23T48 [CP034593]
640773
640701
-
Val
CAC
-
¡û
>C191164695
CP039291
Actinomycetota
Cellulomonas shaoxiangyii Z28 [CP039291]
1976446
1976372
-
Val
CAC
-
¡û
>C191183907
CP040899
Actinomycetota
Georgenia wutianyii Z294 [CP040899]
1904832
1904906
+
Val
CAC
-
¡û
>C191210074
LR134387
Actinomycetota
Cellulomonas fimi NCTC7547 [LR134387]
2259310
2259237
-
Val
CAC
-
¡û
>W141727729
JNFL01000199
Actinomycetota
Georgenia sp. SUBG003 [JNFL]
10276
10202
-
Val
CAC
[ENA]
¡û
>W1910129199
BHYL01000315
Actinomycetota
Cellulomonas algicola TKZ-21 [BHYL]
6520
6594
+
Val
CAC
[ENA]
¡û
>W1910155490
BIMR01000207
Actinomycetota
Cellulomonas biazotea NBRC12680 [BIMR]
6384
6312
-
Val
CAC
[ENA]
¡û
>W1910181038
BJLP01000012
Actinomycetota
Cellulomonas uda NBRC 3747 [BJLP]
39813
39887
+
Val
CAC
[ENA]
¡û
>W1910181087
BJLQ01000012
Actinomycetota
Cellulomonas gelida NBRC 3748 [BJLQ]
86914
86840
-
Val
CAC
[ENA]
¡û
>W1910181144
BJLR01000025
Actinomycetota
Cellulomonas cellasea NBRC 3753 [BJLR]
181105
181031
-
Val
CAC
[ENA]
¡û
>W1910373996
FUHX01000003
Actinomycetota
Actinomycetales bacterium JB111 [FUHX]
5075
5148
+
Val
CAC
[ENA]
¡û
>W1910548499
FZOO01000004
Actinomycetota
Geodermatophilus pulveris DSM 46839 [FZOO]
333809
333882
+
Val
CAC
[ENA]
¡û
>W1910646753
LWUA01000278
Actinomycetota
Blastococcus sp. CCUG 61487 [LWUA]
72176
72249
+
Val
CAC
[ENA]
¡û
>W1911768073
QXFN01000004
Actinomycetota
Cellulomonas telluris CPCC 204705 [QXFN]
564890
564817
-
Val
CAC
[ENA]
¡û
>W1810058067
PDJD01000001
Actinomycetota
Serinibacter salmoneus DSM 21801 [PDJD]
1296491
1296418
-
Val
CAC
[ENA]
¡û
>W1810058305
PDJI01000004
Actinomycetota
Georgenia soli DSM 21838 [PDJI]
114236
114163
-
Val
CAC
[ENA]
¡û
>W1810222149
POQT01000010
Actinomycetota
Blastococcus saxobsidens DSM 44509 [POQT]
32441
32514
+
Val
CAC
[ENA]
¡û
>W1810364459
PVTG01000003
Actinomycetota
Geodermatophilus tzadiensis DSM 45416 [PVTG]
195114
195187
+
Val
CAC
[ENA]
¡û
>W1810533155
QCZF01000009
Actinomycetota
Blastococcus litoris GP-S2-8 [QCZF]
114100
114173
+
Val
CAC
[ENA]
¡û
>W1810609391
QGTX01000001
Actinomycetota
Geodermatophilus normandii DSM 45417 [QGTX]
3885246
3885173
-
Val
CAC
[ENA]
¡û
>W1810676414
QKLZ01000001
Actinomycetota
Georgenia satyanarayanai CGMCC 1.10826 [QKLZ]
610581
610507
-
Val
CAC
[ENA]
¡û
>W1810733470
QOHH01000003
Actinomycetota
Blastococcus sp. TF02-9 [QOHH]
133733
133660
-
Val
CAC
[ENA]
¡û
>W1810733638
QOHK01000009
Actinomycetota
Blastococcus sp. TF02-8 [QOHK]
33610
33683
+
Val
CAC
[ENA]
¡û
>W1510001129
AXCX01000022
Actinomycetota
Actinotalea fermentans ATCC 43279 = JCM 9966 = DSM 3133 [AXCX]
3414
3488
+
Val
CAC
[ENA]
¡û
>C10103433
CP001964
Actinomycetota
Cellulomonas flavigena DSM 20109 [CP001964]
1986952
1987026
+
Val
CAC
[Ensembl]
¡û
>C10107422
CP001867
Actinomycetota
Geodermatophilus obscurus DSM 43160 [CP001867]
3348465
3348391
-
Val
CAC
[Ensembl]
¡û
>C11105045
CP002666
Actinomycetota
Cellulomonas fimi ATCC 484 [CP002666]
2259292
2259218
-
Val
CAC
[Ensembl]
¡û
>C11105123
CP002665
Actinomycetota
Cellulomonas gilvus ATCC 13127 [CP002665]
1709179
1709251
+
Val
CAC
[Ensembl]
¡û
>W1511595486
LBMY01000001
Actinomycetota
Cellulomonas sp. FA1 [LBMY]
871532
871606
+
Val
CAC
[ENA]
¡û
>W1511683475
LFKW01000105
Actinomycetota
Cellulomonas sp. A375-1 [LFKW]
52430
52356
-
Val
CAC
[ENA]
¡û
>W1610029568
AXCY01000003
Actinomycetota
Cellulomonas carbonis T26 [AXCY]
21132
21058
-
Val
CAC
[ENA]
¡û
>W1610029632
AXCZ01000028
Actinomycetota
Cellulomonas bogoriensis 69B4 = DSM 16987 [AXCZ]
12464
12538
+
Val
CAC
[ENA]
¡û
>W1610029812
AXNT01000023
Actinomycetota
Cellulomonas cellasea DSM 20118 [AXNT]
19425
19351
-
Val
CAC
[ENA]
¡û
>W1610051368
BBGU01000380
Actinomycetota
Actinotalea fermentans ATCC 43279 = JCM 9966 = DSM 3133 [BBGU]
633
707
+
Val
CAC
[ENA]
¡û
>W1610051538
BBGY01000425
Actinomycetota
Cellulomonas composti JCM 14898 [BBGY]
831
903
+
Val
CAC
[ENA]
¡û
>W1610051816
BBHH01000418
Actinomycetota
Cellulomonas iranensis NBRC 101100 = JCM 18110 [BBHH]
155
81
-
Val
CAC
[ENA]
¡û
>W1610051826
BBHI01000295
Actinomycetota
Cellulomonas persica JCM 18111 [BBHI]
769
843
+
Val
CAC
[ENA]
¡û
>W1610068089
BCRB01000015
Actinomycetota
Cellulomonas iranensis NBRC 101100 = JCM 18110 [BCRB]
44567
44641
+
Val
CAC
[ENA]
¡û
>W1610207216
FCOT01000013
Actinomycetota
Cellulomonas timonensis SN7 [FCOT]
711262
711336
+
Val
CAC
[ENA]
¡û
>W1610725234
LMER01000014
Actinomycetota
Angustibacter sp. Root456 [LMER]
415173
415101
-
Val
CAC
[ENA]
¡û
>W1610772554
LNTD01000229
Actinomycetota
Cellulomonas sp. B6 [LNTD]
19855
19929
+
Val
CAC
[ENA]
¡û
>W1610946117
LUYL01000013
Actinomycetota
Actinomycetales bacterium Actino_01 [LUYL]
126367
126293
-
Val
CAC
[ENA]
¡û
>W1611063216
MBFF01001057
Actinomycetota
Modestobacter sp. VKM Ac-2676 [MBFF]
910
984
+
Val
CAC
[ENA]
¡û
>W1710026938
AXCY01000003
Actinomycetota
Cellulomonas carbonis T26 [AXCY]
21132
21058
-
Val
CAC
[ENA]
¡û
>W1710027002
AXCZ01000028
Actinomycetota
Cellulomonas bogoriensis 69B4 = DSM 16987 [AXCZ]
12464
12538
+
Val
CAC
[ENA]
¡û
>W1710027140
AXNT01000023
Actinomycetota
Cellulomonas cellasea DSM 20118 [AXNT]
19425
19351
-
Val
CAC
[ENA]
¡û
>W1710047916
BBGY01000425
Actinomycetota
Cellulomonas composti JCM 14898 [BBGY]
831
903
+
Val
CAC
[ENA]
¡û
>W1710048194
BBHH01000418
Actinomycetota
Cellulomonas iranensis NBRC 101100 = JCM 18110 [BBHH]
155
81
-
Val
CAC
[ENA]
¡û
>W1710048204
BBHI01000295
Actinomycetota
Cellulomonas persica JCM 18111 [BBHI]
769
843
+
Val
CAC
[ENA]
¡û
>W1710065462
BCRB01000015
Actinomycetota
Cellulomonas iranensis NBRC 101100 = JCM 18110 [BCRB]
44567
44641
+
Val
CAC
[ENA]
¡û
>W1710207910
FCOT01000013
Actinomycetota
Cellulomonas timonensis SN7 [FCOT]
711262
711336
+
Val
CAC
[ENA]
¡û
>W1710512218
FMZF01000005
Actinomycetota
Geodermatophilus telluris [FMZF]
149586
149512
-
Val
CAC
[ENA]
¡û
>W1710515384
FNBT01000007
Actinomycetota
Blastococcus aurantiacus DSM 44268 [FNBT]
66099
66173
+
Val
CAC
[ENA]
¡û
>W1710524343
FNIQ01000007
Actinomycetota
Geodermatophilus sp. DSM 45219 [FNIQ]
183280
183206
-
Val
CAC
[ENA]
¡û
>W1710526092
FNKA01000002
Actinomycetota
Quadrisphaera sp. DSM 44207 [FNKA]
693330
693256
-
Val
CAC
[ENA]
¡û
>W1710537579
FNTX01000001
Actinomycetota
Ruania alba album [FNTX]
1501467
1501393
-
Val
CAC
[ENA]
¡û
>W1710556181
FOKA01000002
Actinomycetota
Cellulomonas marina [FOKA]
210373
210447
+
Val
CAC
[ENA]
¡û
>W1710566728
FOSE01000002
Actinomycetota
Cellulomonas sp. KH9 [FOSE]
169798
169872
+
Val
CAC
[ENA]
¡û
>W1710572381
FOWQ01000004
Actinomycetota
Geodermatophilus dictyosporus DSM 44208 [FOWQ]
326810
326884
+
Val
CAC
[ENA]
¡û
>W1710584906
FQVX01000006
Actinomycetota
Geodermatophilus nigrescens [FQVX]
118161
118087
-
Val
CAC
[ENA]
¡û
>W1710593474
FRDM01000008
Actinomycetota
Geodermatophilus obscurus [FRDM]
121247
121173
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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