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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.410893 (53 seq.)
>W1711250262
LYMW01000048
Alphaproteobacteria
Rickettsia sp. wq [LYMW]
2280
2354
+
Glu
TTC
[ENA]
¡û
>C171035061
CP015010
Alphaproteobacteria
Rickettsia bellii [CP015010]
232110
232036
-
Glu
TTC
-
¡û
>C171035088
CP015012
Alphaproteobacteria
Rickettsia amblyommatis [CP015012]
554074
554000
-
Glu
TTC
-
¡û
>C018283
CP000087
Alphaproteobacteria
Rickettsia bellii RML369-C [CP000087]
201949
202023
+
Glu
TTC
[Ensembl]
¡û
>C018557
CP000053
Alphaproteobacteria
Rickettsia felis URRWXCal2 URRWXCal2; California 2 [CP000053]
26143
26217
+
Glu
TTC
[Ensembl]
¡û
>w020505
AAUY01000001
Alphaproteobacteria
Rickettsia africae ESF-5 [AAUY]
23024
23098
+
Glu
TTC
[ENA]
¡û
>w005056
AAFE01000001
Alphaproteobacteria
Rickettsia akari str. Hartford [AAFE]
37791
37720
-
Glu
TTC
[ENA]
¡û
>W141147945
AWXL01000001
Alphaproteobacteria
Rickettsia gravesii gravesii BWI-1 [AWXL]
89340
89414
+
Glu
TTC
[ENA]
¡û
>C08008036
CP000849
Alphaproteobacteria
Rickettsia bellii OSU 85-389 [CP000849]
1346191
1346120
-
Glu
TTC
[Ensembl]
¡û
>C08007950
CP000847
Alphaproteobacteria
Rickettsia akari str. Hartford [CP000847]
37791
37720
-
Glu
TTC
[Ensembl]
¡û
>W141255333
CBUA010000014
Alphaproteobacteria
Rickettsia monacensis IrR/Munich [CBUA]
32441
32367
-
Glu
TTC
[ENA]
¡û
>W141266210
CCMG01000012
Alphaproteobacteria
Rickettsia tamurae [CCMG]
27491
27565
+
Glu
TTC
[ENA]
¡û
>WENV170498027
CEVS01392506
[CEVS] marine metagenome genome assembly TARA_151_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
205
279
+
Glu
TTC
[ENA]
¢þ
>WENV170793406
MDSV01115668
[MDSV] marine metagenome; seawater
35304
35378
+
Glu
TTC
[ENA]
¢þ
>W141464113
JFKF01000062
Alphaproteobacteria
Rickettsia tamurae ISO7 [JFKF]
8259
8333
+
Glu
TTC
[ENA]
¡û
>C181002256
AP017572
Alphaproteobacteria
Rickettsia japonica DT-1 [AP017572]
27066
27140
+
Glu
TTC
-
¡û
>C181002289
AP017573
Alphaproteobacteria
Rickettsia japonica HH-1 [AP017573]
26982
27056
+
Glu
TTC
-
¡û
>C181002388
AP017576
Alphaproteobacteria
Rickettsia japonica HH07167 [AP017576]
27066
27140
+
Glu
TTC
-
¡û
>C181002421
AP017577
Alphaproteobacteria
Rickettsia japonica MZ08014 [AP017577]
27066
27140
+
Glu
TTC
-
¡û
>C181002454
AP017578
Alphaproteobacteria
Rickettsia japonica Nakase [AP017578]
27066
27140
+
Glu
TTC
-
¡û
>C181002487
AP017579
Alphaproteobacteria
Rickettsia japonica OHH-1 [AP017579]
26637
26711
+
Glu
TTC
-
¡û
>C181002553
AP017581
Alphaproteobacteria
Rickettsia japonica Tsuneishi [AP017581]
27066
27140
+
Glu
TTC
-
¡û
>C181002586
AP017602
Alphaproteobacteria
Rickettsia japonica YH_M [AP017602]
27066
27140
+
Glu
TTC
-
¡û
>C181019124
CP016305
Alphaproteobacteria
Rickettsia sp. MEAM1 [Bemisia tabaci] [CP016305]
760866
760792
-
Glu
TTC
-
¡û
>C191083851
CP032049
Alphaproteobacteria
Rickettsia japonica LA4/2015 [CP032049]
26637
26711
+
Glu
TTC
-
¡û
>C191108646
CP033611
Alphaproteobacteria
Rickettsiales endosymbiont of Stachyamoeba lipophora RICK01 [CP033611]
361905
361831
-
Glu
TTC
-
¡û
>C191176558
CP040325
Alphaproteobacteria
Rickettsia parkeri Atlantic Rainforest [CP040325]
23315
23389
+
Glu
TTC
-
¡û
>W09127580
ACLC01000096
Alphaproteobacteria
Rickettsia endosymbiont of Ixodes scapularis [ACLC]
6367
6441
+
Glu
TTC
[ENA]
¡û
>C09108959
CP001227
Alphaproteobacteria
Rickettsia peacockii str. Rustic [CP001227]
168208
168282
+
Glu
TTC
[Ensembl]
¡û
>C151094958
CP012420
Alphaproteobacteria
Rickettsia amblyommatis Ac37 [CP012420]
117487
117413
-
Glu
TTC
-
¡û
>C151104122
LN794217
Alphaproteobacteria
Rickettsia monacensis IrR/Munich [LN794217]
269069
268995
-
Glu
TTC
[Ensembl]
¡û
>W1510060649
CCXM01000001
Alphaproteobacteria
Rickettsia hoogstraalii Croatica [CCXM]
764082
764156
+
Glu
TTC
[ENA]
¡û
>W1511365661
JSEL01000001
Alphaproteobacteria
Rickettsia felis LSU-Lb [JSEL]
34437
34511
+
Glu
TTC
[ENA]
¡û
>W1511489437
JWSW01000046
Alphaproteobacteria
Rickettsia asembonensis asemboensis NMRCii [JWSW]
6449
6523
+
Glu
TTC
[ENA]
¡û
>W1511574244
LANQ01000001
Alphaproteobacteria
Rickettsia felis str. Pedreira [LANQ]
804771
804697
-
Glu
TTC
[ENA]
¡û
>W1511574280
LANR01000001
Alphaproteobacteria
Rickettsia amblyommatis amblyommii str. Ac/Pa [LANR]
310822
310748
-
Glu
TTC
[ENA]
¡û
>W1511574843
LAOH01000026
Alphaproteobacteria
Rickettsia amblyommatis amblyommii str. Darkwater [LAOH]
9183
9109
-
Glu
TTC
[ENA]
¡û
>W1511574866
LAOI01000001
Alphaproteobacteria
Rickettsia bellii str. RML An4 [LAOI]
49083
49157
+
Glu
TTC
[ENA]
¡û
>W1511574920
LAOJ01000001
Alphaproteobacteria
Rickettsia bellii str. RML Mogi [LAOJ]
1020320
1020246
-
Glu
TTC
[ENA]
¡û
>W1511574963
LAOK01000001
Alphaproteobacteria
Rickettsia parkeri str. Grand Bay [LAOK]
113012
112938
-
Glu
TTC
[ENA]
¡û
>W1511574977
LAOL01000001
Alphaproteobacteria
Rickettsia parkeri str. AT#24 [LAOL]
653515
653589
+
Glu
TTC
[ENA]
¡û
>C121000172
AP011533
Alphaproteobacteria
Rickettsia japonica YH [AP011533]
26206
26280
+
Glu
TTC
[Ensembl]
¡û
>C121002565
CP002428
Alphaproteobacteria
Rickettsia slovaca 13-B [CP002428]
26452
26526
+
Glu
TTC
[Ensembl]
¡û
>C121011224
CP003334
Alphaproteobacteria
Rickettsia amblyommatis str. GAT-30V [CP003334]
117597
117523
-
Glu
TTC
[Ensembl]
¡û
>C121011228
CP003338
Alphaproteobacteria
Rickettsia australis str. Cutlack [CP003338]
43726
43800
+
Glu
TTC
[Ensembl]
¡û
>C121011293
CP003341
Alphaproteobacteria
Rickettsia parkeri str. Portsmouth [CP003341]
26245
26319
+
Glu
TTC
[Ensembl]
¡û
>C121011757
CP003375
Alphaproteobacteria
Rickettsia slovaca str. D-CWPP [CP003375]
26449
26523
+
Glu
TTC
[Ensembl]
¡û
>W121067868
AJTT01000004
Alphaproteobacteria
Rickettsia honei RB [AJTT]
102961
103035
+
Glu
TTC
[ENA]
¡û
>W121068474
AJUR01000001
Alphaproteobacteria
Rickettsia conorii subsp. caspia A-167 [AJUR]
2517
2591
+
Glu
TTC
[ENA]
¡û
>W121070041
AJWD01000187
Alphaproteobacteria
Rickettsia sp. MEAM1 (Bemisia tabaci) [AJWD]
2462
2536
+
Glu
TTC
[ENA]
¡û
>W121102308
AKVZ01000001
Alphaproteobacteria
Rickettsia australis str. Phillips [AKVZ]
17886
17812
-
Glu
TTC
[ENA]
¡û
>W1610061541
BCMR01000007
Alphaproteobacteria
Rickettsia sp. Tenjiku01 [BCMR]
2105
2179
+
Glu
TTC
[ENA]
¡û
>W1710059206
BCMR01000007
Alphaproteobacteria
Rickettsia sp. Tenjiku01 [BCMR]
2105
2179
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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