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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412296 (42 seq.)
>W131221950
AUAW01000006
Bacillota
Furfurilactobacillus rossiae DSM 15814 [AUAW]
1554
1627
+
Gly
TCC
[ENA]
¡û
>WENV170684299
LFRM01031637
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
349
279
-
Gly
TCC
[ENA]
¢þ
>C183001976
CP025206
Bacillota
Latilactobacillus sakei WiKim0074 [CP025206]
640309
640239
-
Gly
TCC
-
¡û
>C193000652
CP025476
Bacillota
Latilactobacillus curvatus IRG2 [CP025476]
428185
428255
+
Gly
TCC
-
¡û
>C193001554
CP032640
Bacillota
Latilactobacillus sakei ZFM229 [CP032640]
370739
370809
+
Gly
TCC
-
¡û
>W1930036828
PUFP01000055
Bacillota
Lentilactobacillus buchneri ATCC 4005 [PUFP]
3560
3490
-
Gly
TCC
[ENA]
¡û
>W1930037927
QOCS01000038
Bacillota
Bombilactobacillus bombi LV-8.1 [QOCS]
1183
1253
+
Gly
TCC
[ENA]
¡û
>W1830017753
QSLO01000001
Bacillota
Fructilactobacillus fructivorans KCTC 3543 = DSM 20203 [QSLO]
259
329
+
Gly
TCC
[ENA]
¡û
>C163001110
CP014623
Bacillota
Loigolactobacillus backii TMW 1.1988 [CP014623]
627691
627761
+
Gly
TCC
-
¡û
>C163001399
CP016028
Bacillota
Latilactobacillus curvatus FBA2 [CP016028]
482760
482830
+
Gly
TCC
-
¡û
>C163000533
CP012275
Bacillota
Pediococcus damnosus TMW 2.1533 [CP012275]
629089
629019
-
Gly
TCC
-
¡û
>C163000535
CP012283
Bacillota
Pediococcus damnosus TMW 2.1534 [CP012283]
1796960
1797030
+
Gly
TCC
-
¡û
>W121103289
AKZK01000030
Bacillota
Furfurilactobacillus rossiae DSM 15814 [AKZK]
1254
1327
+
Gly
TCC
[ENA]
¡û
>W1610036356
AZFF01000023
Bacillota
Furfurilactobacillus rossiae DSM 15814 [AZFF]
27750
27677
-
Gly
TCC
[ENA]
¡û
>W123000268
AGBU01000098
Bacillota
Latilactobacillus curvatus CRL 705 [AGBU]
491
561
+
Gly
TCC
[ENA]
¡û
>W123000306
AGEY01000204
Bacillota
Lentilactobacillus parafarraginis F0439 [AGEY]
615
685
+
Gly
TCC
[ENA]
¡û
>W123000390
AGRJ01000267
Bacillota
Lentilactobacillus kisonensis F0435 [AGRJ]
286
216
-
Gly
TCC
[ENA]
¡û
>W1630001130
AZCN01000050
Bacillota
Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM [AZCN]
17768
17698
-
Gly
TCC
[ENA]
¡û
>W1630001158
AZDA01000143
Bacillota
Loigolactobacillus bifermentans DSM 20003 [AZDA]
615
685
+
Gly
TCC
[ENA]
¡û
>W1630001174
AZDS01000001
Bacillota
Fructilactobacillus fructivorans KCTC 3543 = DSM 20203 [AZDS]
391137
391067
-
Gly
TCC
[ENA]
¡û
>W1630001196
AZED01000020
Bacillota
Lentilactobacillus otakiensis DSM 19908 = JCM 15040 [AZED]
1222
1292
+
Gly
TCC
[ENA]
¡û
>W1630001283
AZFY01000155
Bacillota
Lentilactobacillus farraginis DSM 18382 = JCM 14108 [AZFY]
1246
1316
+
Gly
TCC
[ENA]
¡û
>W1630001856
BBBQ01000058
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [BBBQ]
491
561
+
Gly
TCC
[ENA]
¡û
>W1630009363
JQAS01000010
Bacillota
Fructilactobacillus fructivorans [JQAS]
416
346
-
Gly
TCC
[ENA]
¡û
>W1630009400
JQBI01000036
Bacillota
Fructilactobacillus fructivorans [JQBI]
416
346
-
Gly
TCC
[ENA]
¡û
>W1630009411
JQBN01000021
Bacillota
Fructilactobacillus fructivorans homohiochii [JQBN]
1167
1237
+
Gly
TCC
[ENA]
¡û
>W1630009431
JQBX01000029
Bacillota
Pediococcus stilesii [JQBX]
8554
8484
-
Gly
TCC
[ENA]
¡û
>W1630009439
JQCB01000005
Bacillota
Furfurilactobacillus siliginis [JQCB]
1218
1291
+
Gly
TCC
[ENA]
¡û
>W1730000638
AZCN01000050
Bacillota
Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM [AZCN]
17768
17698
-
Gly
TCC
[ENA]
¡û
>W1730000660
AZDA01000143
Bacillota
Loigolactobacillus bifermentans DSM 20003 [AZDA]
615
685
+
Gly
TCC
[ENA]
¡û
>W1730000674
AZDS01000001
Bacillota
Fructilactobacillus fructivorans KCTC 3543 = DSM 20203 [AZDS]
391137
391067
-
Gly
TCC
[ENA]
¡û
>W1730000696
AZED01000020
Bacillota
Lentilactobacillus otakiensis DSM 19908 = JCM 15040 [AZED]
1222
1292
+
Gly
TCC
[ENA]
¡û
>W1730000776
AZFY01000155
Bacillota
Lentilactobacillus farraginis DSM 18382 = JCM 14108 [AZFY]
1246
1316
+
Gly
TCC
[ENA]
¡û
>W1730001224
BBBQ01000058
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [BBBQ]
491
561
+
Gly
TCC
[ENA]
¡û
>W1730011265
JQAS01000010
Bacillota
Fructilactobacillus fructivorans [JQAS]
416
346
-
Gly
TCC
[ENA]
¡û
>W1730011301
JQBI01000036
Bacillota
Fructilactobacillus fructivorans [JQBI]
416
346
-
Gly
TCC
[ENA]
¡û
>W1730011312
JQBN01000021
Bacillota
Fructilactobacillus fructivorans homohiochii [JQBN]
1167
1237
+
Gly
TCC
[ENA]
¡û
>W1730011332
JQBX01000029
Bacillota
Pediococcus stilesii [JQBX]
8554
8484
-
Gly
TCC
[ENA]
¡û
>W1730011340
JQCB01000005
Bacillota
Furfurilactobacillus siliginis [JQCB]
1218
1291
+
Gly
TCC
[ENA]
¡û
>W1730034027
MSAU01000001
Bacillota
Lentilactobacillus parabuchneri [MSAU]
113521
113451
-
Gly
TCC
[ENA]
¡û
>W1730034043
MSBC01000002
Bacillota
Lentilactobacillus parabuchneri [MSBC]
33916
33846
-
Gly
TCC
[ENA]
¡û
>W1710033395
AZFF01000023
Bacillota
Furfurilactobacillus rossiae DSM 15814 [AZFF]
27750
27677
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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