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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412312 (76 seq.)
>A171000792
CP001688
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [CP001688]
1647617
1647546
-
Pro
GGG
-
¡û
>A171000810
CP001690
Euryarchaeota
Halogeometricum borinquense DSM 11551 PR 3 [CP001690]
868996
869068
+
Pro
GGG
-
¡û
>A171001169
CP001868
Euryarchaeota
Haloferax mediterranei ATCC 33500 CGMCC 1.2087 [CP001868]
2131858
2131930
+
Pro
GGG
-
¡û
>A171001408
CP001956
Euryarchaeota
Haloferax volcanii DS2 [CP001956]
2358828
2358758
-
Pro
GGG
-
¡û
>A171006218
CP011947
Euryarchaeota
Haloferax gibbonsii ARA6 [CP011947]
2461093
2461023
-
Pro
GGG
-
¡û
>A171007167
FR746099
Euryarchaeota
Haloquadratum walsbyi C23 DSM 16854 [FR746099]
2146260
2146188
-
Pro
GGG
-
¡û
>WENV170009003
APHM01019599
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
442
513
+
Pro
GGG
[ENA]
¢þ
>WENV170009137
APHM01021435
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
89219
89147
-
Pro
GGG
[ENA]
¢þ
>WENV170009182
APHM01021504
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
62111
62181
+
Pro
GGG
[ENA]
¢þ
>At0876
AM180088
Euryarchaeota
Haloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
2068931
2068861
-
Pro
GGG
[Ensembl]
¡û
>WENV170660025
JXWS01094585
[JXWS] soil metagenome; rice field; elevated CO2
360
289
-
Pro
GGG
[ENA]
¢þ
>WENV170681823
LFFM01003119
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
8157
8085
-
Pro
GGG
[ENA]
¢þ
>W1910006661
BBJN01000021
Euryarchaeota
Halolamina rubra CBA1107 [BBJN]
83187
83258
+
Pro
GGG
[ENA]
¡û
>W1910006705
BBJO01000030
Euryarchaeota
Halobellus rufus CBA1103 [BBJO]
94906
94978
+
Pro
GGG
[ENA]
¡û
>W1910006853
BBMO01000001
Euryarchaeota
Halapricum salinum CBA1105 [BBMO]
126302
126373
+
Pro
GGG
[ENA]
¡û
>W1910186241
CCDK010000002
Euryarchaeota
Haloferax prahovense Arc-Hr [CCDK]
123519
123448
-
Pro
GGG
[ENA]
¡û
>W1910193563
CSTE01000006
Euryarchaeota
Haloferax massiliensis Arc-Hr [CSTE]
71712
71783
+
Pro
GGG
[ENA]
¡û
>W1910227017
FNHL01000002
Euryarchaeota
Halogranum gelatinilyticum CGMCC 1.10119 [FNHL]
388796
388726
-
Pro
GGG
[ENA]
¡û
>W1910227090
FNKQ01000001
Euryarchaeota
Halopelagius longus CGMCC 1.12397 [FNKQ]
674137
674066
-
Pro
GGG
[ENA]
¡û
>W1910228434
FNPB01000005
Euryarchaeota
Halobellus clavatus CGMCC 1.10118 [FNPB]
189394
189324
-
Pro
GGG
[ENA]
¡û
>W1910228584
FNVN01000001
Euryarchaeota
Halobellus limi CGMCC 1.10331 [FNVN]
324241
324311
+
Pro
GGG
[ENA]
¡û
>W1910229630
FOAD01000005
Euryarchaeota
Haloferax larsenii CDM_5 [FOAD]
48181
48109
-
Pro
GGG
[ENA]
¡û
>W1910229760
FODV01000004
Euryarchaeota
Halogranum amylolyticum CGMCC 1.10121 [FODV]
93262
93333
+
Pro
GGG
[ENA]
¡û
>W1910230362
FOOQ01000002
Euryarchaeota
Halopelagius inordinatus CGMCC 1.7739 [FOOQ]
401630
401702
+
Pro
GGG
[ENA]
¡û
>W1910230471
FOTC01000001
Euryarchaeota
Halogranum rubrum CGMCC 1.7738 [FOTC]
1236423
1236494
+
Pro
GGG
[ENA]
¡û
>W1910230709
FOYS01000003
Euryarchaeota
Halogeometricum limi CGMCC 1.8711 [FOYS]
567961
567889
-
Pro
GGG
[ENA]
¡û
>W1910230753
FOYT01000002
Euryarchaeota
Halogeometricum rufum CGMCC 1.7736 [FOYT]
507753
507824
+
Pro
GGG
[ENA]
¡û
>W1910573475
JPES01000013
Euryarchaeota
Haloferax sp. ATB1 [JPES]
17870
17799
-
Pro
GGG
[ENA]
¡û
>W1910828010
MWUK01000003
Euryarchaeota
Halolamina sp. CBA1230 [MWUK]
1750229
1750299
+
Pro
GGG
[ENA]
¡û
>W1911629790
PSYS01000004
Euryarchaeota
Haloferax sp. Atlit-47N [PSYS]
384023
384094
+
Pro
GGG
[ENA]
¡û
>W1911629828
PSYT01000002
Euryarchaeota
Haloferax sp. Atlit-24N [PSYT]
383954
384025
+
Pro
GGG
[ENA]
¡û
>W1911629851
PSYU01000001
Euryarchaeota
Haloferax sp. Atlit-19N [PSYU]
387737
387808
+
Pro
GGG
[ENA]
¡û
>W1911629926
PSYV01000002
Euryarchaeota
Haloferax sp. Atlit-16N [PSYV]
386429
386499
+
Pro
GGG
[ENA]
¡û
>W1911629975
PSYW01000002
Euryarchaeota
Haloferax sp. Atlit-12N [PSYW]
400307
400377
+
Pro
GGG
[ENA]
¡û
>W1911630035
PSYX01000003
Euryarchaeota
Haloferax sp. Atlit-10N [PSYX]
386429
386499
+
Pro
GGG
[ENA]
¡û
>W1911630078
PSYY01000002
Euryarchaeota
Haloferax sp. Atlit-4N [PSYY]
396917
396987
+
Pro
GGG
[ENA]
¡û
>W1911655710
QEQI01000002
Euryarchaeota
Haloferax sp. Atlit-48N [QEQI]
432185
432115
-
Pro
GGG
[ENA]
¡û
>W1911655743
QEQJ01000002
Euryarchaeota
Haloferax sp. Atlit-6N [QEQJ]
180876
180947
+
Pro
GGG
[ENA]
¡û
>W1911682238
QKMU01000001
Euryarchaeota
Halogeometricum sp. wsp3 [QKMU]
521904
521832
-
Pro
GGG
[ENA]
¡û
>W1911693753
QLVG01000044
Euryarchaeota
Halorussus litoreus HD8-51 [QLVG]
45120
45191
+
Pro
GGG
[ENA]
¡û
>W1911709507
QPLO01000002
Euryarchaeota
Haloferax sp. Atlit-109R [QPLO]
383954
384025
+
Pro
GGG
[ENA]
¡û
>W1911709556
QPLP01000002
Euryarchaeota
Haloferax sp. Atlit-105R [QPLP]
383954
384025
+
Pro
GGG
[ENA]
¡û
>W1911709635
QPLR01000002
Euryarchaeota
Halobellus sp. Atlit-31R [QPLR]
474085
474157
+
Pro
GGG
[ENA]
¡û
>W1911709880
QPMJ01000002
Euryarchaeota
Halorussus rarus TBN4 [QPMJ]
717983
717912
-
Pro
GGG
[ENA]
¡û
>W1911717796
QQRR01000002
Euryarchaeota
Haloprofundus halophilus NK23 [QQRR]
696110
696040
-
Pro
GGG
[ENA]
¡û
>W1911717833
QQST01000001
Euryarchaeota
Halopelagius longus BC12-B1 [QQST]
2562906
2562835
-
Pro
GGG
[ENA]
¡û
>W1911769983
QXIJ01000004
Euryarchaeota
Halobellus sp. Atlit-38R [QXIJ]
150159
150231
+
Pro
GGG
[ENA]
¡û
>W1610000754
ABTX01000001
Euryarchaeota
Halogeometricum borinquense DSM 11551 [ABTX]
2076184
2076256
+
Pseudo
GGG
[ENA]
¡û
>W1610000800
ABTY01000001
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [ABTY]
2079098
2079169
+
Pseudo
GGG
[ENA]
¡û
>W1610005894
ALJD01000006
Euryarchaeota
Halogranum salarium B-1 [ALJD]
387373
387303
-
Pseudo
GGG
[ENA]
¡û
>W1610011530
ANPG01000558
Euryarchaeota
Haloferax sp. BAB-2207 BAB2207 [ANPG]
3209
3280
+
Pseudo
GGG
[ENA]
¡û
>W1610011750
AOHT01000007
Euryarchaeota
Halogeometricum borinquense DSM 11551 [AOHT]
25776
25848
+
Pseudo
GGG
[ENA]
¡û
>W1610011806
AOHU01000045
Euryarchaeota
Haloferax volcanii DS2 [AOHU]
22536
22466
-
Pseudo
GGG
[ENA]
¡û
>W1610012860
AOIV01000010
Euryarchaeota
Halogeometricum pallidum JCM 14848 [AOIV]
29295
29224
-
Pseudo
GGG
[ENA]
¡û
>W1610013488
AOLD01000044
Euryarchaeota
Haloferax sp. ATCC BAA-646 [AOLD]
111511
111440
-
Pseudo
GGG
[ENA]
¡û
>W1610013513
AOLE01000011
Euryarchaeota
Haloferax sp. ATCC BAA-645 [AOLE]
21301
21230
-
Pseudo
GGG
[ENA]
¡û
>W1610013570
AOLF01000022
Euryarchaeota
Haloferax sp. ATCC BAA-644 [AOLF]
195591
195520
-
Pseudo
GGG
[ENA]
¡û
>W1610013634
AOLG01000047
Euryarchaeota
Haloferax prahovense DSM 18310 [AOLG]
329123
329193
+
Pseudo
GGG
[ENA]
¡û
>W1610013659
AOLH01000008
Euryarchaeota
Haloferax lucentense DSM 14919 [AOLH]
6649
6720
+
Pseudo
GGG
[ENA]
¡û
>W1610013717
AOLI01000019
Euryarchaeota
Haloferax larsenii JCM 13917 [AOLI]
335937
336009
+
Pseudo
GGG
[ENA]
¡û
>W1610013779
AOLJ01000015
Euryarchaeota
Haloferax gibbonsii ATCC 33959 [AOLJ]
35124
35194
+
Pseudo
GGG
[ENA]
¡û
>W1610013844
AOLK01000022
Euryarchaeota
Haloferax elongans ATCC BAA-1513 [AOLK]
148092
148020
-
Pseudo
GGG
[ENA]
¡û
>W1610013896
AOLL01000030
Euryarchaeota
Haloferax alexandrinus JCM 10717 [AOLL]
29959
29889
-
Pseudo
GGG
[ENA]
¡û
>W1610013924
AOLM01000012
Euryarchaeota
Haloferax sulfurifontis ATCC BAA-897 [AOLM]
155792
155721
-
Pseudo
GGG
[ENA]
¡û
>W1610013965
AOLN01000008
Euryarchaeota
Haloferax mucosum ATCC BAA-1512 [AOLN]
35216
35287
+
Pseudo
GGG
[ENA]
¡û
>W1610014046
AOLO01000012
Euryarchaeota
Haloferax mediterranei ATCC 33500 [AOLO]
5019
4947
-
Pseudo
GGG
[ENA]
¡û
>W1610014082
AOLP01000012
Euryarchaeota
Haloferax denitrificans ATCC 35960 [AOLP]
181296
181226
-
Pseudo
GGG
[ENA]
¡û
>W1610018977
AQZY01000010
Euryarchaeota
Halomicrobium katesii DSM 19301 [AQZY]
156168
156239
+
Pseudo
GGG
[ENA]
¡û
>W1610019181
ARPZ01000203
Euryarchaeota
Haloquadratum sp. J07HQX50 [ARPZ]
1395
1466
+
Pseudo
GGG
[ENA]
¡û
>W1610020294
ASGZ01000030
Euryarchaeota
Candidatus Halobonum tyrrellensis tyrrellensis G22 [ASGZ]
15342
15271
-
Pseudo
GGG
[ENA]
¡û
>W1610617579
LGUC01000001
Euryarchaeota
Halolamina pelagica CDK2 [LGUC]
361779
361708
-
Pseudo
GGG
[ENA]
¡û
>W1610675777
LKIR01000099
Euryarchaeota
Haloparvum sedimenti DYS4 [LKIR]
5802
5872
+
Pseudo
GGG
[ENA]
¡û
>W1610784300
LOEP01000027
Euryarchaeota
Haloferax sp. Q22 [LOEP]
95307
95377
+
Pseudo
GGG
[ENA]
¡û
>W1610799804
LOPU01000029
Euryarchaeota
Haloprofundus marisrubri SB9 [LOPU]
769331
769260
-
Pseudo
GGG
[ENA]
¡û
>W1610799842
LOPV01000147
Euryarchaeota
Haloferax profundi SB29 [LOPV]
139
66
-
Pseudo
GGG
[ENA]
¡û
>W1610799881
LOPW01000014
Euryarchaeota
Haloferax marisrubri SB3 [LOPW]
167582
167511
-
Pseudo
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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