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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412577 (64 seq.)
>W131000467
AGEM01000012
Actinomycetota
Corynebacterium sp. HFH0082 [AGEM]
326898
326827
-
Cys
GCA
[ENA]
¡û
>W1711092534
LTEE01000045
Actinomycetota
Corynebacterium sp. HMSC076C10 [LTEE]
629
558
-
Cys
GCA
[ENA]
¡û
>W1711093870
LTFJ01000016
Actinomycetota
Corynebacterium sp. HMSC064E08 [LTFJ]
106954
106883
-
Cys
GCA
[ENA]
¡û
>W1711095125
LTGN01000033
Actinomycetota
Corynebacterium sp. HMSC063F04 [LTGN]
81440
81511
+
Cys
GCA
[ENA]
¡û
>W1711096274
LTHP01000112
Actinomycetota
Corynebacterium sp. HMSC077C02 [LTHP]
31977
32048
+
Cys
GCA
[ENA]
¡û
>W1711096330
LTHQ01000040
Actinomycetota
Corynebacterium sp. HMSC063G05 [LTHQ]
13496
13567
+
Cys
GCA
[ENA]
¡û
>W1711096982
LTIG01000029
Actinomycetota
Corynebacterium sp. HMSC077G01 [LTIG]
100
171
+
Cys
GCA
[ENA]
¡û
>W1711097568
LTIU01000048
Actinomycetota
Corynebacterium sp. HMSC064H12 [LTIU]
619
548
-
Cys
GCA
[ENA]
¡û
>W1711098032
LTJF01000021
Actinomycetota
Corynebacterium sp. HMSC063A05 [LTJF]
255250
255321
+
Cys
GCA
[ENA]
¡û
>W1711098552
LTJR01000008
Actinomycetota
Corynebacterium sp. HMSC074C11 [LTJR]
234615
234686
+
Cys
GCA
[ENA]
¡û
>W1711099058
LTKD01000032
Actinomycetota
Corynebacterium sp. HMSC077G07 [LTKD]
85492
85563
+
Cys
GCA
[ENA]
¡û
>W1711099361
LTKK01000046
Actinomycetota
Corynebacterium sp. HMSC055G02 [LTKK]
619
548
-
Cys
GCA
[ENA]
¡û
>W1711102268
LTNP01000014
Actinomycetota
Corynebacterium sp. HMSC075F02 [LTNP]
85432
85503
+
Cys
GCA
[ENA]
¡û
>W1711102344
LTNQ01000038
Actinomycetota
Corynebacterium sp. HMSC074C05 [LTNQ]
105615
105544
-
Cys
GCA
[ENA]
¡û
>W1711102376
LTNR01000045
Actinomycetota
Corynebacterium sp. HMSC074C03 [LTNR]
90259
90330
+
Cys
GCA
[ENA]
¡û
>W1711102407
LTNS01000007
Actinomycetota
Corynebacterium sp. HMSC073B01 [LTNS]
618
547
-
Cys
GCA
[ENA]
¡û
>W1711102486
LTNT01000028
Actinomycetota
Corynebacterium sp. HMSC072D01 [LTNT]
149
78
-
Cys
GCA
[ENA]
¡û
>W1711102537
LTNU01000057
Actinomycetota
Corynebacterium sp. HMSC072B09 [LTNU]
618
547
-
Cys
GCA
[ENA]
¡û
>W1711102593
LTNV01000056
Actinomycetota
Corynebacterium sp. HMSC061H03 [LTNV]
96
167
+
Cys
GCA
[ENA]
¡û
>W1711103267
LTOO01000011
Actinomycetota
Corynebacterium sp. HMSC073H12 [LTOO]
183222
183293
+
Cys
GCA
[ENA]
¡û
>W1711103445
LTOS01000027
Actinomycetota
Corynebacterium sp. HMSC072B08 [LTOS]
37587
37516
-
Cys
GCA
[ENA]
¡û
>W1711107023
LTSJ01000038
Actinomycetota
Corynebacterium sp. HMSC064E07 [LTSJ]
601
530
-
Cys
GCA
[ENA]
¡û
>W1711110062
LTVE01000042
Actinomycetota
Corynebacterium sp. HMSC070B05 [LTVE]
619
548
-
Cys
GCA
[ENA]
¡û
>W1711112777
LTXS01000011
Actinomycetota
Corynebacterium sp. HMSC065H09 [LTXS]
115252
115181
-
Cys
GCA
[ENA]
¡û
>W1711113420
LTYH01000014
Actinomycetota
Corynebacterium sp. HMSC064E10 [LTYH]
256625
256696
+
Cys
GCA
[ENA]
¡û
>W1711114866
LTZQ01000038
Actinomycetota
Corynebacterium sp. HMSC11H10 [LTZQ]
86749
86678
-
Cys
GCA
[ENA]
¡û
>W1711114934
LTZS01000022
Actinomycetota
Corynebacterium sp. HMSC14H10 [LTZS]
37533
37462
-
Cys
GCA
[ENA]
¡û
>W1711186829
LWON01000026
Actinomycetota
Corynebacterium sp. HMSC14B06 [LWON]
151
80
-
Cys
GCA
[ENA]
¡û
>W1711187886
LWPW01000060
Actinomycetota
Corynebacterium sp. HMSC074C04 [LWPW]
20012
20083
+
Cys
GCA
[ENA]
¡û
>W1711427576
MIFV01000001
Actinomycetota
Corynebacterium amycolatum [MIFV]
85666
85737
+
Cys
GCA
[ENA]
¡û
>W1711507504
MKXS01000012
Actinomycetota
Corynebacterium sp. S1S1 [MKXS]
218
147
-
Cys
GCA
[ENA]
¡û
>W1711723997
MTPT01000002
Actinomycetota
Corynebacterium amycolatum [MTPT]
89928
89999
+
Cys
GCA
[ENA]
¡û
>C171002003
CP009247
Actinomycetota
Corynebacterium frankenforstense DSM 45800 ST18 [CP009247]
1134333
1134262
-
Cys
GCA
-
¡û
>WENV180550878
OCJC01026305
[OCJC] human gut metagenome; Infant 1 DOL 6 skin
213
142
-
Cys
GCA
[ENA]
¢þ
>WENV180554255
OCJN01000034
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
398
327
-
Cys
GCA
[ENA]
¢þ
>WENV180749707
ODHR01001091
[ODHR] human metagenome; G_DNA_Anterior nares
1047
1118
+
Cys
GCA
[ENA]
¢þ
>WENV181326388
OFLL01000239
[OFLL] metagenome; faeces
14585
14514
-
Cys
GCA
[ENA]
¢þ
>WENV183664283
ORJL010361992
[ORJL] groundwater metagenome; groundwater
2032
2105
+
Cys
GCA
[ENA]
¢þ
>WENV183675183
ORJL011482904
[ORJL] groundwater metagenome; groundwater
887
960
+
Cys
GCA
[ENA]
¢þ
>WENV170689714
LFRM01308086
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
184
113
-
Cys
GCA
[ENA]
¢þ
>WENV170961829
MLJW01002082
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
1561
1488
-
Cys
GCA
[ENA]
¢þ
>C181056573
CP022054
Actinomycetota
Corynebacterium jeikeium FDAARGOS_328 [CP022054]
494267
494196
-
Cys
GCA
-
¡û
>C191094583
CP032788
Actinomycetota
Corynebacterium xerosis GS 1 [CP032788]
733458
733529
+
Cys
GCA
-
¡û
>C191111918
CP033784
Actinomycetota
Corynebacterium jeikeium FDAARGOS_574 [CP033784]
1266746
1266675
-
Cys
GCA
-
¡û
>W09114657
ABZU01000014
Actinomycetota
Corynebacterium amycolatum SK46 [ABZU]
119
48
-
Cys
GCA
[ENA]
¡û
>W1911596487
PNHF01000002
Actinomycetota
Corynebacterium xerosis UMB0908 [PNHF]
145958
146029
+
Cys
GCA
[ENA]
¡û
>W1911630654
PTJO01000003
Actinomycetota
Corynebacterium alimapuense CCUG 69366 [PTJO]
254673
254744
+
Cys
GCA
[ENA]
¡û
>W1810187639
PKHT01000001
Actinomycetota
Corynebacterium amycolatum UMB0338 [PKHT]
136800
136871
+
Cys
GCA
[ENA]
¡û
>C151013258
CP006841
Actinomycetota
Corynebacterium lactis RW2-5 [CP006841]
1299013
1298940
-
Cys
GCA
-
¡û
>C151039875
CP008913
Actinomycetota
Corynebacterium sp. ATCC 6931 [CP008913]
2388597
2388526
-
Cys
GCA
[Ensembl]
¡û
>C151040802
CP008944
Actinomycetota
Corynebacterium atypicum R2070 [CP008944]
974425
974496
+
Cys
GCA
[Ensembl]
¡û
>C11101274
CP002786
Actinomycetota
Hoyosella subflava DQS3-9A1 [CP002786]
1858959
1858888
-
Cys
GCA
[Ensembl]
¡û
>W1511351394
JRNE01000088
Actinomycetota
Corynebacterium freneyi DNF00450 [JRNE]
252
181
-
Cys
GCA
[ENA]
¡û
>W1511442754
JUSD01000004
Actinomycetota
Corynebacterium sp. 805_CJEI 805_CJEI [JUSD]
166
95
-
Cys
GCA
[ENA]
¡û
>W1511457784
JVIP01000002
Actinomycetota
Corynebacterium sp. 401_CJEI 401_CJEI [JVIP]
163
92
-
Cys
GCA
[ENA]
¡û
>W1511461085
JVMD01000024
Actinomycetota
Corynebacterium halotolerans 307_CHAL [JVMD]
271921
271992
+
Cys
GCA
[ENA]
¡û
>W1511463623
JVOW01000035
Actinomycetota
Corynebacterium sp. 239_CJEI 239_CJEI [JVOW]
91097
91168
+
Cys
GCA
[ENA]
¡û
>W1511464302
JVPT01000041
Actinomycetota
Corynebacterium sp. 212_CJEI 212_CJEI [JVPT]
110
181
+
Cys
GCA
[ENA]
¡û
>W1511469470
JVVM01000023
Actinomycetota
Corynebacterium vitaeruminis 1285_CVIT [JVVM]
215
144
-
Cys
GCA
[ENA]
¡û
>W1511476415
JWEP01000026
Actinomycetota
Corynebacterium urealyticum 1055_CURE [JWEP]
129
200
+
Cys
GCA
[ENA]
¡û
>W1610068215
BCRD01000005
Actinomycetota
Corynebacterium xerosis NBRC 16721 [BCRD]
20562
20633
+
Cys
GCA
[ENA]
¡û
>W1610081220
BDDI01000002
Actinomycetota
Hoyosella altamirensis [BDDI]
10874
10803
-
Cys
GCA
[ENA]
¡û
>W1710065588
BCRD01000005
Actinomycetota
Corynebacterium xerosis NBRC 16721 [BCRD]
20562
20633
+
Cys
GCA
[ENA]
¡û
>W1710079871
BDDI01000002
Actinomycetota
Hoyosella altamirensis [BDDI]
10874
10803
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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