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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412661 (26 seq.)
>W1711404294
MFYH01000023
Unclassified
Candidatus Peribacteria bacterium RIFOXYA1_FULL_56_14 [MFYH]
30479
30406
-
Gly
CCC
[ENA]
¡û
>W1711404351
MFYI01000016
Unclassified
Candidatus Peribacteria bacterium RIFOXYA2_FULL_55_28 [MFYI]
58374
58447
+
Gly
CCC
[ENA]
¡û
>W1711404380
MFYJ01000007
Unclassified
Candidatus Peribacteria bacterium RIFOXYB1_FULL_54_35 [MFYJ]
73315
73242
-
Gly
CCC
[ENA]
¡û
>W1711404411
MFYK01000006
Unclassified
Candidatus Peribacteria bacterium RIFOXYB1_FULL_57_12 [MFYK]
17958
17885
-
Gly
CCC
[ENA]
¡û
>W1711404465
MFYL01000013
Unclassified
Candidatus Peribacteria bacterium RIFOXYB2_FULL_54_17 [MFYL]
312483
312556
+
Gly
CCC
[ENA]
¡û
>W1711404491
MFYM01000002
Unclassified
Candidatus Peribacteria bacterium RIFOXYC1_FULL_54_13 [MFYM]
85164
85237
+
Gly
CCC
[ENA]
¡û
>W1711404546
MFYN01000036
Unclassified
Candidatus Peribacteria bacterium RIFOXYC1_FULL_58_8 [MFYN]
967
894
-
Gly
CCC
[ENA]
¡û
>W1711404575
MFYO01000006
Unclassified
Candidatus Peribacteria bacterium RIFOXYC2_FULL_55_14 [MFYO]
54457
54530
+
Gly
CCC
[ENA]
¡û
>W1711404672
MFYQ01000025
Unclassified
Candidatus Peribacteria bacterium RIFOXYD1_FULL_54_13 [MFYQ]
53734
53807
+
Gly
CCC
[ENA]
¡û
>W1711582990
MNWP01000012
Unclassified
Candidatus Peregrinibacteria bacterium CG1_02_54_53 [MNWP]
4616
4689
+
Gly
CCC
[ENA]
¡û
>WENV180254021
OBEQ010595752
[OBEQ] groundwater metagenome; groundwater
490
563
+
Gly
CCC
[ENA]
¢þ
>WENV180256267
OBEQ010800296
[OBEQ] groundwater metagenome; groundwater
2244
2317
+
Gly
CCC
[ENA]
¢þ
>WENV180271177
OBEQ012243646
[OBEQ] groundwater metagenome; groundwater
884
957
+
Gly
CCC
[ENA]
¢þ
>WENV181374938
OFQY01032647
[OFQY] wastewater metagenome; Exp Tend VB 10WW
590
663
+
Gly
CCC
[ENA]
¢þ
>WENV183668736
ORJL010769147
[ORJL] groundwater metagenome; groundwater
80225
80298
+
Gly
CCC
[ENA]
¢þ
>WENV183689831
ORMF011500000
[ORMF] groundwater metagenome; groundwater
605
678
+
Gly
CCC
[ENA]
¢þ
>WENV170956941
MJUP01379259
[MJUP] soil metagenome; viral particles from soil sample MGM
89
16
-
Gly
CCC
[ENA]
¢þ
>W1910717169
MFXU01000040
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_02_FULL_51_15 [MFXU]
11087
11160
+
Gly
CCC
[ENA]
¡û
>W1910717388
MFYA01000021
Unclassified
Candidatus Peribacteria bacterium RIFCSPLOWO2_01_FULL_51_18 [MFYA]
10639
10566
-
Gly
CCC
[ENA]
¡û
>W1910717480
MFYD01000001
Unclassified
Candidatus Peribacteria bacterium RIFCSPLOWO2_02_FULL_51_10 [MFYD]
21335
21262
-
Gly
CCC
[ENA]
¡û
>W1511618886
LCRQ01000001
Unclassified
Candidatus Peribacteria bacterium GW2011_GWB1_54_5 GW2011_GWB1_54_5 [LCRQ]
4608
4681
+
Gly
CCC
[ENA]
¡û
>C161050455
CP013062
Unclassified
Candidatus Peribacter riflensis [CP013062]
674769
674696
-
Gly
CCC
-
¡û
>C161050499
CP013063
Unclassified
Candidatus Peribacter riflensis [CP013063]
674924
674851
-
Gly
CCC
-
¡û
>C161050543
CP013064
Unclassified
Candidatus Peribacter riflensis [CP013064]
674855
674782
-
Gly
CCC
-
¡û
>C161050587
CP013065
Unclassified
Candidatus Peribacter riflensis [CP013065]
674648
674575
-
Gly
CCC
-
¡û
>C161050631
CP013066
Unclassified
Candidatus Peribacter riflensis [CP013066]
674923
674850
-
Gly
CCC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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