This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.413302 (87 seq.)
>A171000802
CP001688
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [CP001688]
463483
463412
-
Ala
CGC
-
¡û
>A171001140
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
3142855
3142783
-
Ala
CGC
-
¡û
>A171002462
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
3163646
3163574
-
Ala
CGC
-
¡û
>A171002630
CP002921
Euryarchaeota
Haloarcula hispanica ATCC 33960 CGMCC 1.2049 [CP002921, CP002922]
2730360
2730289
-
Ala
CGC
-
¡û
>A171003963
CP006884
Euryarchaeota
Haloarcula hispanica N601 [CP006884, CP006885]
2741793
2741722
-
Ala
CGC
-
¡û
>A171005820
CP010529
Euryarchaeota
Haloarcula sp. CBA1115 [CP010529]
1325807
1325736
-
Ala
CGC
-
¡û
>A171006696
CP016070
Euryarchaeota
Halodesulfurarchaeum formicicum HTSR1 [CP016070]
1486874
1486945
+
Ala
CGC
-
¡û
>A171006737
CP016804
Euryarchaeota
Halodesulfurarchaeum formicicum HSR6 [CP016804]
1576852
1576923
+
Ala
CGC
-
¡û
>A171006929
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
4143402
4143474
+
Ala
CGC
-
¡û
>A171007160
FR746099
Euryarchaeota
Haloquadratum walsbyi C23 DSM 16854 [FR746099]
2897901
2897829
-
Ala
CGC
-
¡û
>WENV180318279
OBKM01000272
[OBKM] metagenome; water
16480
16551
+
Ala
CGC
[ENA]
¢þ
>WENV180318284
OBKM01000288
[OBKM] metagenome; water
1
72
+
Ala
CGC
[ENA]
¢þ
>WENV180318552
OBKM01001842
[OBKM] metagenome; water
7160
7233
+
Ala
CGC
[ENA]
¢þ
>WENV180318658
OBKM01003828
[OBKM] metagenome; water
1
73
+
Ala
CGC
[ENA]
¢þ
>WENV180318770
OBKM01009191
[OBKM] metagenome; water
1849
1777
-
Ala
CGC
[ENA]
¢þ
>WENV180318856
OBKM01019735
[OBKM] metagenome; water
835
763
-
Ala
CGC
[ENA]
¢þ
>WENV180318901
OBKM01035167
[OBKM] metagenome; water
467
396
-
Ala
CGC
[ENA]
¢þ
>WENV170008725
APHM01002844
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
710
635
-
Ala
CGC
[ENA]
¢þ
>WENV170008819
APHM01008179
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
1847
1776
-
Ala
CGC
[ENA]
¢þ
>WENV170009152
APHM01021453
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
28625
28554
-
Ala
CGC
[ENA]
¢þ
>WENV170009194
APHM01021605
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
183
112
-
Ala
CGC
[ENA]
¢þ
>WENV170009248
APHM01021875
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
575
501
-
Ala
CGC
[ENA]
¢þ
>At0786
AY596297
Euryarchaeota
Haloarcula marismortui ATCC 43049 [AY596297, AY596298]
2146679
2146608
-
Ala
CGC
[Ensembl]
¡û
>At0883
AM180088
Euryarchaeota
Haloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
2744783
2744712
-
Ala
CGC
[Ensembl]
¡û
>WENV170680535
LFCJ01013865
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
5396
5322
-
Ala
CGC
[ENA]
¢þ
>WENV170681262
LFFM01000321
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
6345
6417
+
Ala
CGC
[ENA]
¢þ
>WENV170681561
LFFM01001427
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
7851
7777
-
Ala
CGC
[ENA]
¢þ
>WENV170681621
LFFM01001693
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
799
728
-
Ala
CGC
[ENA]
¢þ
>WENV170702600
LKMJ01002825
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
397
471
+
Ala
CGC
[ENA]
¢þ
>WENV170702933
LKMJ01004912
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
3511
3437
-
Ala
CGC
[ENA]
¢þ
>WENV170703405
LKMJ01011087
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
689
761
+
Ala
CGC
[ENA]
¢þ
>WENV170703770
LKMJ01016542
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
5749
5820
+
Ala
CGC
[ENA]
¢þ
>WENV170703781
LKMJ01016622
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
439
368
-
Ala
CGC
[ENA]
¢þ
>WENV170703926
LKMJ01019023
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
325
397
+
Ala
CGC
[ENA]
¢þ
>WENV170703941
LKMJ01019324
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1200
1274
+
Ala
CGC
[ENA]
¢þ
>WENV170704040
LKMJ01021267
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
2823
2749
-
Ala
CGC
[ENA]
¢þ
>W1910175102
BIXZ01000002
Euryarchaeota
Haloarcula mannanilytica MD-130 MD130-1 [BIXZ]
480326
480397
+
Ala
CGC
[ENA]
¡û
>W1910226879
FNFC01000011
Euryarchaeota
Halovenus aranensis IBRC-M10015 [FNFC]
55656
55727
+
Ala
CGC
[ENA]
¡û
>W1910228359
FNOF01000002
Euryarchaeota
Haloarcula vallismortis DSM 3756 [FNOF]
182350
182279
-
Ala
CGC
[ENA]
¡û
>W1910229757
FODV01000003
Euryarchaeota
Halogranum amylolyticum CGMCC 1.10121 [FODV]
55275
55204
-
Ala
CGC
[ENA]
¡û
>W1910229889
FOIC01000003
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
76475
76403
-
Ala
CGC
[ENA]
¡û
>W1910229947
FOIS01000003
Euryarchaeota
Natrinema salifodinae CGMCC 1.12284 [FOIS]
435379
435307
-
Ala
CGC
[ENA]
¡û
>W1910230235
FOKW01000001
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
647809
647738
-
Ala
CGC
[ENA]
¡û
>W1910230503
FOTC01000003
Euryarchaeota
Halogranum rubrum CGMCC 1.7738 [FOTC]
104652
104580
-
Ala
CGC
[ENA]
¡û
>W1910282472
FRAN01000003
Euryarchaeota
Haladaptatus paucihalophilus DX253 [FRAN]
252805
252733
-
Ala
CGC
[ENA]
¡û
>W1910340449
FTNO01000001
Euryarchaeota
Haladaptatus litoreus CGMCC 1.7737 [FTNO]
271635
271706
+
Ala
CGC
[ENA]
¡û
>W1910568560
JDTH01000002
Euryarchaeota
Haladaptatus cibarius D43 [JDTH]
1654044
1653972
-
Ala
CGC
[ENA]
¡û
>W1910575889
JROF01000024
Euryarchaeota
Natrinema salifodinae KCY07-B2 [JROF]
54206
54278
+
Ala
CGC
[ENA]
¡û
>W1910617615
LIUF01000007
Euryarchaeota
Haloarcula rubripromontorii SL3 [LIUF]
78906
78977
+
Ala
CGC
[ENA]
¡û
>W1910646106
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
414118
414189
+
Ala
CGC
[ENA]
¡û
>W1910696298
MEIH01000335
Euryarchaeota
Haladaptatus sp. W1 [MEIH]
12173
12244
+
Ala
CGC
[ENA]
¡û
>W1911493136
OBEJ01000001
Euryarchaeota
Natronoarchaeum philippinense DSM 27208 [OBEJ]
1114179
1114250
+
Ala
CGC
[ENA]
¡û
>W1911709157
QPHM01000001
Euryarchaeota
Haloplanus salinus JCM 18368 [QPHM]
1825691
1825762
+
Ala
CGC
[ENA]
¡û
>W1911709451
QPLN01000001
Euryarchaeota
Haloarcula sp. Atlit-120R [QPLN]
918924
918853
-
Ala
CGC
[ENA]
¡û
>W1911709588
QPLQ01000001
Euryarchaeota
Haloarcula sp. Atlit-47R [QPLQ]
977507
977436
-
Ala
CGC
[ENA]
¡û
>W1911770023
QXIK01000003
Euryarchaeota
Haloarcula sp. Atlit-7R [QXIK]
87272
87201
-
Ala
CGC
[ENA]
¡û
>W1911824369
QZWE01000038
Euryarchaeota
Halococcus sp. IIIV-5B [QZWE]
12536
12465
-
Ala
CGC
[ENA]
¡û
>W1610000789
ABTY01000001
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [ABTY]
152036
152107
+
Ala
CGC
[ENA]
¡û
>W1610002982
AEMG01000009
Euryarchaeota
Haladaptatus paucihalophilus DX253 [AEMG]
172214
172142
-
Ala
CGC
[ENA]
¡û
>W1610003651
AGCY01000509
Euryarchaeota
halophilic archaeon J07HX64 [AGCY]
575
501
-
Ala
CGC
[ENA]
¡û
>W1610005341
AJRK01000405
Euryarchaeota
Halococcus hamelinensis 100A6 [AJRK]
17272
17343
+
Ala
CGC
[ENA]
¡û
>W1610005887
ALJD01000004
Euryarchaeota
Halogranum salarium B-1 [ALJD]
64996
64922
-
Ala
CGC
[ENA]
¡û
>W1610011943
AOHX01000026
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
287789
287717
-
Ala
CGC
[ENA]
¡û
>W1610012426
AOIL01000030
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
13844
13916
+
Ala
CGC
[ENA]
¡û
>W1610012563
AOIO01000031
Euryarchaeota
Natrialba asiatica DSM 12278 [AOIO]
92454
92382
-
Ala
CGC
[ENA]
¡û
>W1610012590
AOIP01000014
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
238149
238077
-
Ala
CGC
[ENA]
¡û
>W1610012723
AOIS01000030
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
39160
39231
+
Ala
CGC
[ENA]
¡û
>W1610012774
AOIT01000029
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
2190
2261
+
Ala
CGC
[ENA]
¡û
>W1610014124
AOLQ01000007
Euryarchaeota
Haloarcula vallismortis ATCC 29715 [AOLQ]
182255
182184
-
Ala
CGC
[ENA]
¡û
>W1610014175
AOLR01000008
Euryarchaeota
Haloarcula sinaiiensis ATCC 33800 [AOLR]
126935
126864
-
Ala
CGC
[ENA]
¡û
>W1610014256
AOLW01000007
Euryarchaeota
Haloarcula amylolytica JCM 13557 [AOLW]
48336
48407
+
Ala
CGC
[ENA]
¡û
>W1610014329
AOLX01000023
Euryarchaeota
Haloarcula argentinensis DSM 12282 [AOLX]
177125
177196
+
Ala
CGC
[ENA]
¡û
>W1610014364
AOLY01000005
Euryarchaeota
Haloarcula japonica DSM 6131 [AOLY]
247701
247772
+
Ala
CGC
[ENA]
¡û
>W1610014410
AOLZ01000022
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
599
527
-
Ala
CGC
[ENA]
¡û
>W1610014504
AOMB01000015
Euryarchaeota
Halococcus hamelinensis 100A6 [AOMB]
16332
16261
-
Ala
CGC
[ENA]
¡û
>W1610014601
AOMD01000030
Euryarchaeota
Halococcus saccharolyticus DSM 5350 [AOMD]
313561
313489
-
Ala
CGC
[ENA]
¡û
>W1610014644
AOME01000076
Euryarchaeota
Halococcus salifodinae DSM 8989 [AOME]
120166
120094
-
Ala
CGC
[ENA]
¡û
>W1610018845
AQXI01000001
Euryarchaeota
Haladaptatus paucihalophilus DX253 [AQXI]
2409226
2409298
+
Ala
CGC
[ENA]
¡û
>W1610019113
ARPX01000208
Euryarchaeota
Haloquadratum walsbyi J07HQW1 [ARPX]
156162
156091
-
Ala
CGC
[ENA]
¡û
>W1610019182
ARPZ01000241
Euryarchaeota
Haloquadratum sp. J07HQX50 [ARPZ]
579
654
+
Ala
CGC
[ENA]
¡û
>W1610061915
BCNA01000001
Euryarchaeota
Haloarcula sp. CBA1128 [BCNA]
2044167
2044096
-
Ala
CGC
[ENA]
¡û
>W1610061936
BCNB01000006
Euryarchaeota
Haloarcula sp. CBA1127 [BCNB]
882523
882594
+
Ala
CGC
[ENA]
¡û
>W1610082990
CBMA010000029
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
8160
8089
-
Ala
CGC
[ENA]
¡û
>W1610682537
LKNC01000022
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g1 [LKNC]
7851
7777
-
Ala
CGC
[ENA]
¡û
>W1610682574
LKND01000033
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g14 [LKND]
6345
6417
+
Ala
CGC
[ENA]
¡û
>W1610682656
LKNG01000043
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g8 [LKNG]
799
728
-
Ala
CGC
[ENA]
¡û
>W1610881039
LRHL01000043
Euryarchaeota
Haloarcula sp. K1 [LRHL]
343179
343250
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK