This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.416633 (13 seq.)
>W131169213
AREO01000005
Bacillota
Erysipelothrix tonsillarum DSM 14972 [AREO]
35528
35455
-
Thr
GGT
[ENA]
¡û
>C171057458
CP017116
Bacillota
Erysipelothrix rhusiopathiae WH13013 [CP017116]
1704350
1704423
+
Thr
GGT
-
¡û
>WENV170685452
LFRM01092055
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
4282
4355
+
Thr
GGT
[ENA]
¢þ
>WENV170717925
LSQX01054672
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
843
770
-
Thr
GGT
[ENA]
¢þ
>C181185442
CP029804
Bacillota
Erysipelothrix rhusiopathiae ML101 [CP029804]
152423
152350
-
Thr
GGT
-
¡û
>W09127998
ACLK01000016
Bacillota
Erysipelothrix rhusiopathiae ATCC 19414 [ACLK]
132515
132588
+
Thr
GGT
[ENA]
¡û
>C191108245
CP033601
Bacillota
Erysipelothrix rhusiopathiae KC-Sb-R1 [CP033601]
1680537
1680610
+
Thr
GGT
-
¡û
>C191122067
CP034234
Bacillota
Erysipelothrix piscisicarius 15TAL0474 [CP034234]
190062
190135
+
Thr
GGT
-
¡û
>C191211066
LR134439
Bacillota
Erysipelothrix rhusiopathiae NCTC8163 [LR134439]
830508
830435
-
Thr
GGT
-
¡û
>C151007179
CP005079
Bacillota
Erysipelothrix rhusiopathiae SY1027 [CP005079]
1456016
1455943
-
Thr
GGT
[Ensembl]
¡û
>C11108904
AP012027
Bacillota
Erysipelothrix rhusiopathiae str. Fujisawa [AP012027]
152275
152202
-
Thr
GGT
[Ensembl]
¡û
>C161053113
CP013213
Bacillota
Erysipelothrix larvae LV19 [CP013213]
2078939
2079012
+
Thr
GGT
[Ensembl]
¡û
>C161078649
CP014861
Bacillota
Erysipelothrix rhusiopathiae GXBY-1 [CP014861]
1813271
1813344
+
Thr
GGT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK